Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006304

Physical Location & Seq

Genomic Coordinates Forward (+)

22378313 .. 22379289

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTTCTTCGACACCTCCAACGGCGTCTATGCCGTCGCCTGGTCCGAATCTCCGTCAAGCTCTAAAACCTTGCCCTCCCGCTGACCTCCAAACTCACCGTATCGCCTCCCACGTCATCCTCCTCTACGGCCAGGCCCGCATGCCCGACCACGCCGTCCTCACCTTCGAGCTTTGCCATGAACTCGGTATCCCCCAGGACGTGAAGCTCCTCAATGCCCTGTTATTATCTTGCGTTTTCGCCGAGGATTACAAAGAGGTGACTCGGATTTACCGCGACTTTCTGAAGATTTATGAGATCGAGCCAAATCTGGACACTTACAATTGCGCACTCAAATCCCTTTTGGAATCCGGTTCCACCAGCTCTGCCTACTCTGTTTTGGCAGAGATGGAGAAGAGGAGGATCAAGCCGGATGGGAACACATTCGGGAACTTGCTTTCGGGGTTTTACAGCGAGGAGAGGATTCGGAGTCTTTGTAAGTTGAAGAAGTCGATGGAGGCCGAGGCATTGTTGGATGGGATGTTGGGGAGGGGTATCAAGCCGAATGCGGTCACGTTTTGCCATTTGATTCTTGGGTTTTGCAAGGAGGGGAATTTGGAGCAAGGGAAGAAGATGTTTGAGAAGATGGTGGAGAGGGGCATTGAGAAGATTTGGGTGCCGAATTTTGCTACGATGAGGTTGCATGTGGATGGACTTGTGAGCATTGGGAAGGTGGCTGAGGCTCGCCAGCTTATCGGCCAGATGAAGGAGAAGTTCACTGTGAATCAACATAGGTGGAGTGAAGTTGAAGAACGCTTGCCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

268

Amino Acids

30.17

Weight (kDa)

8.11

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	102 - 149	8.8e-09	PPR repeat family
PPR_2	PF13041	155 - 195	1.4e-07	PPR repeat family
PPR_1	PF12854	177 - 210	5.6e-10	PPR repeat
PPR	PF01535	184 - 214	1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11630 AT1G61870
fragaria_vesca	FvH4_3g02370 FvH4_3g02370
malus_domestica	MD05G1343300.v1.1 MD10G1318400.v1.1
prunus_persica	Prupe.1G264600_v2.0.a1 Prupe.4G023500_v2.0.a1
pyrus_communis	pycom05g31280 pycom10g26970
rosa_chinensis	RchiOBHm_Chr4g0403291 RchiOBHm_Chr5g0003601
rosa_laevigata	RLG00000031155
rosa_multiflora	Rmu_sc0001904.1_g000005 Rmu_sc0003948.1_g000005 Rmu_sc0004279.1_g000002 Rmu_sc0015897.1_g000005 Rmu_sc0028363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072370
rosa_rugosa	Rorug04G0404900 Rorug05G0111800
rosa_samantha	Rh4BG209100 Rh5AG031800 Rh5BG030600 Rh5CG034500 Rh5DG031300
rosa_wichuraiana	Rw5G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
Acc16I	TGCGCA	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	655
AccII	CGCG	1 cut(s)	276
AciI	CCGC	4 cut(s)	81, 139, 274, 548
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	2 cut(s)	130, 736
AcsI	RAATTY	2 cut(s)	592, 661
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	41, 745
AgsI	TTSAA	2 cut(s)	484, 788
AjiI	CACGTC	2 cut(s)	115, 202
AjnI	CCWGG	3 cut(s)	40, 132, 195
AloI	GAACNNNNNNTCC	2 cut(s)	174, 206
AluBI	AGCT	5 cut(s)	62, 172, 208, 363, 730
AluI	AGCT	5 cut(s)	62, 172, 208, 363, 730
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	4 cut(s)	130, 135, 498, 736
ApoI	RAATTY	2 cut(s)	592, 661
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	44, 136
AsuHPI	GGTGA	3 cut(s)	89, 154, 271
AvaII	GGWCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	655
BbvCI	CCTCAGC	1 cut(s)	717
BccI	CCATC	6 cut(s)	382, 407, 487, 509, 619, 683
BceAI	ACGGC	4 cut(s)	19, 39, 140, 145
BcgI	CGANNNNNNTGC	2 cut(s)	661, 695
BciT130I	CCWGG	3 cut(s)	42, 134, 197
BciVI	GTATCC	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	200
Bme1390I	CCNGG	3 cut(s)	42, 134, 197
Bme18I	GGWCC	1 cut(s)	44
BmgBI	CACGTC	2 cut(s)	115, 202
BmgT120I	GGNCC	2 cut(s)	44, 136
BmiI	GGNNCC	2 cut(s)	355, 657
BmrFI	CCNGG	3 cut(s)	42, 134, 197
Bpu10I	CCTNAGC	1 cut(s)	717
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	195, 243, 501
BsaWI	WCCGGW	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 745
BseBI	CCWGG	3 cut(s)	42, 134, 197
BseDI	CCNNGG	3 cut(s)	195, 243, 501
BseGI	GGATG	5 cut(s)	117, 418, 520, 525, 694
BseLI	CCNNNNNNNGG	2 cut(s)	41, 745
BseMII	CTCAG	1 cut(s)	708
BseRI	GAGGAG	4 cut(s)	113, 200, 412, 470
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	4 cut(s)	132, 137, 500, 738
BshNI	GGYRCC	1 cut(s)	655
BsiSI	CCGG	2 cut(s)	351, 410
BslI	CCNNNNNNNGG	2 cut(s)	41, 745
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	4 cut(s)	132, 137, 500, 738
Bsp143I	GATC	2 cut(s)	297, 402
BspACI	CCGC	4 cut(s)	81, 139, 274, 548
BspANI	GGCC	4 cut(s)	132, 137, 500, 738
BspCNI	CTCAG	1 cut(s)	709
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	355, 657
BspPI	GGATC	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	195, 243, 501
BssMI	GATC	2 cut(s)	297, 402
BssNI	GRCGYC	1 cut(s)	26
Bst2UI	CCWGG	3 cut(s)	42, 134, 197
Bst4CI	ACNGT	3 cut(s)	101, 760, 804
Bst6I	CTCTTC	1 cut(s)	389
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	5 cut(s)	139, 143, 724, 728, 797
BstDEI	CTNAG	1 cut(s)	717
BstF5I	GGATG	5 cut(s)	117, 418, 520, 525, 694
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	300, 405
BstMBI	GATC	2 cut(s)	297, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	3 cut(s)	42, 134, 197
BstNSI	RCATGY	2 cut(s)	145, 686
BstSCI	CCNGG	3 cut(s)	40, 132, 195
BstUI	CGCG	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	4 cut(s)	132, 137, 500, 738
BtrI	CACGTC	2 cut(s)	115, 202
BtsCI	GGATG	5 cut(s)	117, 418, 520, 525, 694
BtsIMutI	CAGTG	1 cut(s)	756
Cac8I	GCNNGC	5 cut(s)	139, 143, 724, 728, 797
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	2 cut(s)	44, 136
CseI	GACGC	1 cut(s)	15
CspCI	CAANNNNNGTGG	2 cut(s)	755, 790
CviAII	CATG	3 cut(s)	142, 179, 683
DdeI	CTNAG	1 cut(s)	717
DpnI	GATC	2 cut(s)	299, 404
DpnII	GATC	2 cut(s)	297, 402
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	2 cut(s)	130, 736
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	305
EcoRII	CCWGG	3 cut(s)	40, 132, 195
FaeI	CATG	3 cut(s)	145, 182, 686
FaiI	YATR	6 cut(s)	32, 143, 180, 294, 684, 771
FatI	CATG	3 cut(s)	141, 178, 682
FauI	CCCGC	2 cut(s)	88, 146
FokI	GGATG	5 cut(s)	104, 425, 527, 532, 701
FspI	TGCGCA	1 cut(s)	328
GlaI	GCGC	1 cut(s)	328
HaeIII	GGCC	4 cut(s)	132, 137, 500, 738
HapII	CCGG	2 cut(s)	351, 410
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	145, 182, 686
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	7 cut(s)	49, 262, 347, 463, 469, 568, 763
HpaII	CCGG	2 cut(s)	351, 410
HphI	GGTGA	3 cut(s)	89, 154, 271
Hpy166II	GTNNAC	1 cut(s)	756
Hpy188I	TCNGA	4 cut(s)	48, 267, 285, 468
Hpy188III	TCNNGA	2 cut(s)	311, 427
Hpy8I	GTNNAC	1 cut(s)	756
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	175, 703, 739
HpyCH4III	ACNGT	3 cut(s)	101, 760, 804
HpyCH4IV	ACGT	3 cut(s)	114, 201, 554
HpyCH4V	TGCA	2 cut(s)	582, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	717
HpySE526I	ACGT	3 cut(s)	114, 201, 554
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	3 cut(s)	145, 182, 686
HspAI	GCGC	1 cut(s)	327
Kzo9I	GATC	2 cut(s)	297, 402
LmnI	GCTCC	2 cut(s)	213, 598
MaeII	ACGT	3 cut(s)	114, 201, 554
MaeIII	GTNAC	2 cut(s)	259, 550
MalI	GATC	2 cut(s)	299, 404
MboI	GATC	2 cut(s)	297, 402
MboII	GAAGA	8 cut(s)	298, 406, 496, 619, 622, 634, 658, 800
MfeI	CAATTG	1 cut(s)	322
MluCI	AATT	3 cut(s)	322, 592, 661
MlyI	GAGTC	2 cut(s)	256, 478
MmeI	TCCRAC	2 cut(s)	44, 492
MroXI	GAANNNNTTC	1 cut(s)	422
MslI	CAYNNNNRTG	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	2 cut(s)	351, 410
MspR9I	CCNGG	3 cut(s)	42, 134, 197
MunI	CAATTG	1 cut(s)	322
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	3 cut(s)	42, 134, 197
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	2 cut(s)	297, 402
NlaIII	CATG	3 cut(s)	145, 182, 686
NlaIV	GGNNCC	2 cut(s)	355, 657
NmeAIII	GCCGAG	2 cut(s)	268, 526
NmuCI	GTSAC	2 cut(s)	259, 550
NsbI	TGCGCA	1 cut(s)	328
NspI	RCATGY	2 cut(s)	145, 686
PaeI	GCATGC	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 111
PctI	GAATGC	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	5 cut(s)	49, 347, 463, 568, 763
PleI	GAGTC	2 cut(s)	256, 477
PpsI	GAGTC	2 cut(s)	256, 477
Psp6I	CCWGG	3 cut(s)	40, 132, 195
PspGI	CCWGG	3 cut(s)	40, 132, 195
PspN4I	GGNNCC	2 cut(s)	355, 657
PspPI	GGNCC	2 cut(s)	44, 136
RseI	CAYNNNNRTG	1 cut(s)	687
Sau3AI	GATC	2 cut(s)	297, 402
Sau96I	GGNCC	2 cut(s)	44, 136
SchI	GAGTC	2 cut(s)	256, 478
ScrFI	CCNGG	3 cut(s)	42, 134, 197
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	687
SphI	GCATGC	1 cut(s)	145
Sse9I	AATT	3 cut(s)	322, 592, 661
SsiI	CCGC	4 cut(s)	81, 139, 274, 548
StyD4I	CCNGG	3 cut(s)	40, 132, 195
TaaI	ACNGT	3 cut(s)	101, 760, 804
TaiI	ACGT	3 cut(s)	117, 204, 557
TaqI	TCGA	4 cut(s)	11, 168, 300, 491
TasI	AATT	3 cut(s)	322, 592, 661
TfiI	GAWTC	5 cut(s)	49, 347, 463, 568, 763
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	2 cut(s)	259, 550
Tsp45I	GTSAC	2 cut(s)	259, 550
TspDTI	ATGAA	2 cut(s)	195, 758
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	592, 661
XceI	RCATGY	2 cut(s)	145, 686
XcmI	CCANNNNNNNNNTGG	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.