Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

4358895 .. 4361371

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGACGGCGGGATCAAGCTACAGTGTCTCAACAGATCATCAAGTTTCGTCACCTCTCGTGAATCTAGGAAATGTTGCTGGTGTTTGTATAATGAGCAATGCATGGAAAGTTGAACAAGAACCTTCACTGATCAATTTCATATCTGCGTTTCTTAGCGCAAACTCTTTCCGCCTTAACTTTGTCTCTATCCCCCCTGATCTCATCTTCAATTGTGGAGGTGTTTCTATTGCTTTTGTTTTTGTGACTAAATGGGATTTTTCCAATGTTGCTTCCATCTTCAGCAGAGTAAAGAGGCTGAAAGGGCAATTTGCGCAACTTTATGTTGTTGCTACACTTTCAACTAAAGAGCAGAGTGATTCTTTTATGCGATCTTACTTCCAATATGAGATGGAGTTTGGGAAACCTGCGTTTGTACAAGTCACTGATGCTGAGATGGGATTTGAGAAGATTGTTAAGATTGCTCACTCTCGTGGAGTGTGCAAGCAACAGAAGGTGGCCTCTAAGCTCAAGGTTGAGAGAAAGCGAACTGTGCAGGATACAAACATCTTCATCAGATTTGTCACATCCATACCCAATATTAACAAACATGATGCGAACACGCTGTACCAGGCTATTGGTTCAATTGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAAACACAGATCTCTCTTCTAAAAAGGCTGATACACTCACCAGGTTTTTCCAAGATCCTGAGTTCTACCTCAGTCCCAAATTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

250

Amino Acids

27.89

Weight (kDa)

9.17

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_5	PF14520	186 - 240	3.1e-08	Helix-hairpin-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	315
Acc36I	ACCTGC	1 cut(s)	415
AciI	CCGC	2 cut(s)	11, 172
AclWI	GGATC	2 cut(s)	22, 713
AcsI	RAATTY	1 cut(s)	743
AcuI	CTGAAG	1 cut(s)	265
AfaI	GTAC	2 cut(s)	417, 608
AgsI	TTSAA	6 cut(s)	116, 211, 342, 624, 629, 748
AjnI	CCWGG	2 cut(s)	609, 704
AleI	CACNNNNGTG	1 cut(s)	471
AluBI	AGCT	2 cut(s)	21, 508
AluI	AGCT	2 cut(s)	21, 508
Alw26I	GTCTC	2 cut(s)	34, 190
AlwI	GGATC	2 cut(s)	22, 713
AoxI	GGCC	1 cut(s)	498
ApoI	RAATTY	1 cut(s)	743
AspLEI	GCGC	2 cut(s)	161, 316
AsuHPI	GGTGA	2 cut(s)	45, 694
BauI	CACGAG	2 cut(s)	59, 471
BbsI	GAAGAC	1 cut(s)	660
BccI	CCATC	3 cut(s)	284, 385, 430
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	611, 706
BciVI	GTATCC	1 cut(s)	532
BclI	TGATCA	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	34, 190
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	22
BfuAI	ACCTGC	1 cut(s)	415
BfuI	GTATCC	1 cut(s)	532
BglII	AGATCT	1 cut(s)	673
Bme1390I	CCNGG	2 cut(s)	611, 706
BmrFI	CCNGG	2 cut(s)	611, 706
BmsI	GCATC	3 cut(s)	418, 583, 653
BpiI	GAAGAC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	494
Bse3DI	GCAATG	1 cut(s)	106
BseBI	CCWGG	2 cut(s)	611, 706
BseGI	GGATG	2 cut(s)	566, 644
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	3 cut(s)	423, 714, 748
BsgI	GTGCAG	1 cut(s)	554
BshFI	GGCC	1 cut(s)	500
BslFI	GGGAC	1 cut(s)	723
BsmAI	GTCTC	2 cut(s)	34, 190
BsmFI	GGGAC	1 cut(s)	723
BsnI	GGCC	1 cut(s)	500
Bsp1407I	TGTACA	1 cut(s)	415
Bsp143I	GATC	7 cut(s)	14, 37, 132, 199, 371, 673, 718
BspACI	CCGC	2 cut(s)	11, 172
BspANI	GGCC	1 cut(s)	500
BspCNI	CTCAG	3 cut(s)	424, 715, 747
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	2 cut(s)	22, 713
BsrDI	GCAATG	1 cut(s)	106
BsrGI	TGTACA	1 cut(s)	415
BssMI	GATC	7 cut(s)	14, 37, 132, 199, 371, 673, 718
BssSI	CACGAG	2 cut(s)	59, 471
Bst2BI	CACGAG	2 cut(s)	59, 471
Bst2UI	CCWGG	2 cut(s)	611, 706
Bst4CI	ACNGT	2 cut(s)	26, 532
Bst6I	CTCTTC	1 cut(s)	685
BstAUI	TGTACA	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	5 cut(s)	155, 432, 504, 723, 734
BstF5I	GGATG	2 cut(s)	566, 644
BstHHI	GCGC	2 cut(s)	161, 316
BstKTI	GATC	7 cut(s)	17, 40, 135, 202, 374, 676, 721
BstMAI	GTCTC	2 cut(s)	34, 190
BstMBI	GATC	7 cut(s)	14, 37, 132, 199, 371, 673, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	304, 313, 532
BstNI	CCWGG	2 cut(s)	611, 706
BstSCI	CCNGG	2 cut(s)	609, 704
BstSFI	CTRYAG	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	2 cut(s)	673, 718
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	2 cut(s)	673, 718
BsuI	GTATCC	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	500
BtsCI	GGATG	2 cut(s)	566, 644
BtsIMutI	CAGTG	3 cut(s)	31, 128, 423
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	485
CfoI	GCGC	2 cut(s)	161, 316
CsiI	ACCWGGT	1 cut(s)	704
Csp6I	GTAC	2 cut(s)	416, 607
CviAII	CATG	2 cut(s)	105, 590
CviJI	RGCY	6 cut(s)	21, 298, 500, 508, 614, 692
CviKI_1	RGCY	6 cut(s)	21, 298, 500, 508, 614, 692
CviQI	GTAC	2 cut(s)	416, 607
DdeI	CTNAG	5 cut(s)	155, 432, 504, 723, 734
DpnI	GATC	7 cut(s)	16, 39, 134, 201, 373, 675, 720
DpnII	GATC	7 cut(s)	14, 37, 132, 199, 371, 673, 718
Eam1104I	CTCTTC	1 cut(s)	685
EarI	CTCTTC	1 cut(s)	685
EciI	GGCGGA	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	609, 704
EcoT22I	ATGCAT	1 cut(s)	106
FaeI	CATG	2 cut(s)	108, 593
FaiI	YATR	8 cut(s)	92, 106, 143, 324, 368, 387, 572, 591
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	2 cut(s)	104, 589
FauI	CCCGC	1 cut(s)	4
FbaI	TGATCA	1 cut(s)	132
FokI	GGATG	2 cut(s)	553, 631
FspBI	CTAG	1 cut(s)	68
FspI	TGCGCA	1 cut(s)	315
GlaI	GCGC	2 cut(s)	160, 315
HaeIII	GGCC	1 cut(s)	500
HhaI	GCGC	2 cut(s)	161, 316
Hin1II	CATG	2 cut(s)	108, 593
Hin6I	GCGC	2 cut(s)	159, 314
HinP1I	GCGC	2 cut(s)	159, 314
HinfI	GANTC	2 cut(s)	64, 359
HphI	GGTGA	2 cut(s)	45, 694
Hpy188I	TCNGA	1 cut(s)	557
Hpy188III	TCNNGA	2 cut(s)	61, 722
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	135, 487
HpyCH4III	ACNGT	2 cut(s)	26, 532
HpyCH4V	TGCA	3 cut(s)	104, 483, 535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	304, 313, 532
HpyF3I	CTNAG	5 cut(s)	155, 432, 504, 723, 734
Hsp92II	CATG	2 cut(s)	108, 593
HspAI	GCGC	2 cut(s)	159, 314
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	7 cut(s)	14, 37, 132, 199, 371, 673, 718
LpnPI	CCDG	9 cut(s)	66, 210, 420, 521, 596, 623, 691, 718, 735
LweI	GCATC	3 cut(s)	418, 583, 653
MabI	ACCWGGT	1 cut(s)	704
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	4 cut(s)	51, 244, 421, 562
MalI	GATC	7 cut(s)	16, 39, 134, 201, 373, 675, 720
MboI	GATC	7 cut(s)	14, 37, 132, 199, 371, 673, 718
MboII	GAAGA	6 cut(s)	199, 271, 460, 541, 665, 672
MfeI	CAATTG	2 cut(s)	211, 624
MflI	RGATCY	2 cut(s)	673, 718
MluCI	AATT	5 cut(s)	136, 211, 308, 624, 743
MnlI	CCTC	5 cut(s)	66, 212, 288, 511, 743
Mph1103I	ATGCAT	1 cut(s)	106
MseI	TTAA	3 cut(s)	177, 456, 582
MslI	CAYNNNNRTG	1 cut(s)	471
MspR9I	CCNGG	2 cut(s)	611, 706
MunI	CAATTG	2 cut(s)	211, 624
MvaI	CCWGG	2 cut(s)	611, 706
MwoI	GCNNNNNNNGC	3 cut(s)	304, 313, 532
NdeII	GATC	7 cut(s)	14, 37, 132, 199, 371, 673, 718
NlaIII	CATG	2 cut(s)	108, 593
NmuCI	GTSAC	4 cut(s)	51, 244, 421, 562
NsbI	TGCGCA	1 cut(s)	315
NsiI	ATGCAT	1 cut(s)	106
OliI	CACNNNNGTG	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	64, 359
Psp6I	CCWGG	2 cut(s)	609, 704
PspGI	CCWGG	2 cut(s)	609, 704
PsrI	GAACNNNNNNTAC	2 cut(s)	590, 622
PsuI	RGATCY	2 cut(s)	673, 718
RsaI	GTAC	2 cut(s)	417, 608
RsaNI	GTAC	2 cut(s)	416, 607
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	3 cut(s)	177, 456, 582
Sau3AI	GATC	7 cut(s)	14, 37, 132, 199, 371, 673, 718
ScrFI	CCNGG	2 cut(s)	611, 706
SexAI	ACCWGGT	1 cut(s)	704
SfaNI	GCATC	3 cut(s)	418, 583, 653
SfcI	CTRYAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	5 cut(s)	136, 211, 308, 624, 743
SsiI	CCGC	2 cut(s)	11, 172
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	609, 704
TaaI	ACNGT	2 cut(s)	26, 532
TasI	AATT	5 cut(s)	136, 211, 308, 624, 743
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	2 cut(s)	64, 359
Tru1I	TTAA	3 cut(s)	177, 456, 582
Tru9I	TTAA	3 cut(s)	177, 456, 582
TscAI	CASTG	3 cut(s)	31, 135, 430
TseFI	GTSAC	4 cut(s)	51, 244, 421, 562
Tsp45I	GTSAC	4 cut(s)	51, 244, 421, 562
TspDTI	ATGAA	2 cut(s)	130, 541
TspRI	CASTG	3 cut(s)	31, 135, 430
XapI	RAATTY	1 cut(s)	743
XspI	CTAG	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.