Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

1451787 .. 1454851

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G001020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCTCTTGCATTCTATCTCACAAAGCCACACTGGGGTTTGTATGATGAGAAACACATGGAGGGATGAACAGCACCCGTCTTTCATAAACTTCATCTCCAATTTCCTCACTGCAAATTCGTTCCGGCTTAAATTTGTCTCAATTCCAGCAGACTTCATTTTCAACTGTGGGGGTTCATCAGTGGCATTTATCTTTGTAACAAGCTTGGATTCAACTAATGTCTCTGAAATCTTCGCCAGAACTCAAATACTGAAGCAGCAATTTGCGCATTTCTATGTTATCTGTACCCTCCCAACCAAGGAACAAAATGACTTGTTTGTTCGTTCTTACTTCAATTTCGGATTGGAGCTTGGTAAGCCGGCATTTGTTCTGGTTAAAGACTTAGAGATGGGTTTTGAAAAGATGCTAAGGATAGTTTATGCACGTGGAGTATGCAAGCGAGAGGATGTCACCACAAAATTGAAGGCTCAGAGAGAGCAATATGTGCAAACCGTGGGCATGTTTCAAAGAGTGGTCACATCCATACCAGGACTTGACAATCATGATGCAAATGCGCTTAACCAAGCAGTTGGATCAATTGAAGCAATTGCCAAGGAATCGAAGGAGCATATTCTGGAAAACACAGACCTTTCAGCTAACAAGGCAGAAGTAATTTCAAGGTTTTTCAGGGATCAAAAGTTTTACCTCAGTCCGAAGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

234

Amino Acids

26.7

Weight (kDa)

8.65

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	267
AclWI	GGATC	2 cut(s)	580, 678
AcsI	RAATTY	2 cut(s)	115, 131
AcuI	CTGAAG	1 cut(s)	272
AcvI	CACGTG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	34, 298
AgsI	TTSAA	8 cut(s)	163, 213, 334, 398, 463, 506, 581, 657
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	3 cut(s)	204, 349, 635
AluI	AGCT	3 cut(s)	204, 349, 635
Alw26I	GTCTC	2 cut(s)	142, 226
AlwI	GGATC	2 cut(s)	580, 678
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	115, 131
AspLEI	GCGC	2 cut(s)	268, 556
AsuHPI	GGTGA	1 cut(s)	442
BbrPI	CACGTG	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	528
BcoDI	GTCTC	2 cut(s)	142, 226
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
Bme1390I	CCNGG	1 cut(s)	528
BmrFI	CCNGG	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	393, 535
BmuI	ACTGGG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	297, 492, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 298
Bse118I	RCCGGY	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	297, 492, 591
BseGI	GGATG	3 cut(s)	70, 451, 518
BseLI	CCNNNNNNNGG	2 cut(s)	34, 298
BseMII	CTCAG	2 cut(s)	482, 700
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	124, 359
BslI	CCNNNNNNNGG	2 cut(s)	34, 298
BsmAI	GTCTC	2 cut(s)	142, 226
BsmI	GAATGC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	572, 670, 696
BspCNI	CTCAG	2 cut(s)	481, 699
BspHI	TCATGA	1 cut(s)	541
BspPI	GGATC	2 cut(s)	580, 678
BsrFI	RCCGGY	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	3 cut(s)	297, 492, 591
BssMI	GATC	3 cut(s)	572, 670, 696
BssT1I	CCWWGG	2 cut(s)	297, 591
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	167, 493
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	360, 437
BstDEI	CTNAG	4 cut(s)	382, 407, 468, 686
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	3 cut(s)	70, 451, 518
BstHHI	GCGC	2 cut(s)	268, 556
BstKTI	GATC	3 cut(s)	575, 673, 699
BstMAI	GTCTC	2 cut(s)	142, 226
BstMBI	GATC	3 cut(s)	572, 670, 696
BstMWI	GCNNNNNNNGC	4 cut(s)	265, 355, 484, 641
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	569
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	3 cut(s)	70, 451, 518
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	30, 108, 186
Cac8I	GCNNGC	2 cut(s)	360, 437
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	2 cut(s)	268, 556
Cfr10I	RCCGGY	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	3 cut(s)	57, 499, 542
CviJI	RGCY	7 cut(s)	27, 127, 204, 349, 358, 467, 635
CviKI_1	RGCY	7 cut(s)	27, 127, 204, 349, 358, 467, 635
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	4 cut(s)	382, 407, 468, 686
DpnI	GATC	3 cut(s)	574, 672, 698
DpnII	GATC	3 cut(s)	572, 670, 696
Eco130I	CCWWGG	2 cut(s)	297, 591
Eco57I	CTGAAG	1 cut(s)	272
Eco72I	CACGTG	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	297, 591
ErhI	CCWWGG	2 cut(s)	297, 591
FaeI	CATG	3 cut(s)	60, 502, 545
FatI	CATG	3 cut(s)	56, 498, 541
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	3 cut(s)	77, 458, 505
Fsp4HI	GCNGC	1 cut(s)	257
FspI	TGCGCA	1 cut(s)	267
GlaI	GCGC	2 cut(s)	267, 555
GluI	GCNGC	1 cut(s)	257
HapII	CCGG	2 cut(s)	124, 359
HhaI	GCGC	2 cut(s)	268, 556
Hin1II	CATG	3 cut(s)	60, 502, 545
Hin6I	GCGC	2 cut(s)	266, 554
HinP1I	GCGC	2 cut(s)	266, 554
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	2 cut(s)	209, 596
HpaII	CCGG	2 cut(s)	124, 359
HphI	GGTGA	1 cut(s)	442
Hpy188I	TCNGA	4 cut(s)	226, 341, 471, 693
Hpy188III	TCNNGA	2 cut(s)	542, 614
HpyAV	CCTTC	2 cut(s)	457, 595
HpyCH4III	ACNGT	2 cut(s)	167, 493
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	6 cut(s)	10, 113, 422, 435, 487, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	265, 355, 484, 641
HpyF3I	CTNAG	4 cut(s)	382, 407, 468, 686
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	3 cut(s)	60, 502, 545
HspAI	GCGC	2 cut(s)	266, 554
KroI	GCCGGC	1 cut(s)	358
KroNI	GCCGGC	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	572, 670, 696
LmnI	GCTCC	2 cut(s)	346, 604
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	2 cut(s)	393, 535
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	3 cut(s)	196, 448, 514
MalI	GATC	3 cut(s)	574, 672, 698
MboI	GATC	3 cut(s)	572, 670, 696
MboII	GAAGA	1 cut(s)	223
MfeI	CAATTG	3 cut(s)	576, 585, 700
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	5 cut(s)	54, 116, 299, 436, 695
MroNI	GCCGGC	1 cut(s)	358
MseI	TTAA	3 cut(s)	129, 375, 558
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	2 cut(s)	124, 359
MspR9I	CCNGG	1 cut(s)	528
MunI	CAATTG	3 cut(s)	576, 585, 700
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	4 cut(s)	265, 355, 484, 641
NaeI	GCCGGC	1 cut(s)	360
NdeII	GATC	3 cut(s)	572, 670, 696
NgoMIV	GCCGGC	1 cut(s)	358
NlaIII	CATG	3 cut(s)	60, 502, 545
NmuCI	GTSAC	2 cut(s)	448, 514
NsbI	TGCGCA	1 cut(s)	267
NspI	RCATGY	1 cut(s)	502
PagI	TCATGA	1 cut(s)	541
PctI	GAATGC	1 cut(s)	10
PdiI	GCCGGC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	209, 596
PkrI	GCNGC	1 cut(s)	258
PmaCI	CACGTG	1 cut(s)	425
PmlI	CACGTG	1 cut(s)	425
Ppu21I	YACGTR	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	526
PspCI	CACGTG	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	526
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	129, 375, 558
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	3 cut(s)	572, 670, 696
ScrFI	CCNGG	1 cut(s)	528
SetI	ASST	7 cut(s)	206, 351, 427, 630, 637, 662, 687
SfaNI	GCATC	2 cut(s)	393, 535
SmiMI	CAYNNNNRTG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	2 cut(s)	297, 591
TaaI	ACNGT	2 cut(s)	167, 493
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	1 cut(s)	599
TfiI	GAWTC	2 cut(s)	209, 596
Tru1I	TTAA	3 cut(s)	129, 375, 558
Tru9I	TTAA	3 cut(s)	129, 375, 558
TscAI	CASTG	3 cut(s)	37, 115, 186
TseFI	GTSAC	2 cut(s)	448, 514
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	2 cut(s)	448, 514
TspDTI	ATGAA	5 cut(s)	73, 81, 82, 145, 165
TspRI	CASTG	3 cut(s)	37, 115, 186
XapI	RAATTY	2 cut(s)	115, 131
XceI	RCATGY	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.