Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

551314 .. 554292

Gene Structure 2979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G007100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAAATGGCGAATACGAAAGCAACGTCTCAAATTCCATCGAGGGCCATAAGCTCAGGTGGTGGTGGTGGGGTTTGTATGATGAGCAACACATGGAGAGATGAACAACACCCATCTTTCATCAACTTCATTTCCACCTTCCTCACTGCAAACGCTTTCCGTCTTAACTTTGTCCCAATTGCCCCTGACTTCATTTTCAACTGTGGGGGTTCATCTGTGGCATTCATCTTTGTGACAAGCTTGGATCCCACTTCCATCTCACAAATCTTCGGCAGAGTTCAAAAACTGAAGCTGCAATTTGCAAATCTATATGTTGTCATCACCCTCCCAACCAAGGAGAAAAATGATTTGTTTGTTTGTTCTTACTTCAAATTCGGAATGGAGCTTGGTAAACCCACATTCGTTCTGGTTAAGGACTTGGAAATGGGGTTTGAAAAGATGGTAAAGATAGCTCACTCTCGTGGGGTATGCAAGCGAGAGGATGCTACCGCAAAATTGAAGGCTGAGAGGAAGCAAACTGTGCAAGCAGTGAACGTGTTTCAAAGAGTGGTCACATCCATTCCGGGTATCGACAATCATGATGCGAATGCGCTTAACCAAGCGATTGGTTCGATTGAAGCAATTTCCAAGGCATCAAAGGAGCAAATTCTGGAAAACACAGACCTCTCTGCTGACAAGGCAGAAGTTGTTTCAAGGTTTTTCAGGGATCCAAAGTTTTACCTGAGTCCCAAGATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

247

Amino Acids

27.24

Weight (kDa)

9.14

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	489
AclWI	GGATC	4 cut(s)	239, 252, 701, 714
AcsI	RAATTY	3 cut(s)	33, 371, 645
AcuI	CTGAAG	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	8 cut(s)	199, 281, 370, 434, 499, 542, 617, 693
AleI	CACNNNNGTG	1 cut(s)	459
AluBI	AGCT	5 cut(s)	54, 240, 292, 385, 452
AluI	AGCT	5 cut(s)	54, 240, 292, 385, 452
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	4 cut(s)	239, 252, 701, 714
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	3 cut(s)	33, 371, 645
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	1 cut(s)	45
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	1 cut(s)	313
BamHI	GGATCC	2 cut(s)	244, 706
BauI	CACGAG	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	4 cut(s)	46, 121, 263, 433
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	33
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	564
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	246, 708
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	3 cut(s)	472, 571, 641
Bpu10I	CCTNAGC	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	564
BsaJI	CCNNGG	2 cut(s)	333, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
BseDI	CCNNGG	2 cut(s)	333, 627
BseGI	GGATG	2 cut(s)	487, 554
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	3 cut(s)	69, 495, 713
BseXI	GCAGC	1 cut(s)	279
BshFI	GGCC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	2 cut(s)	158, 711
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsmFI	GGGAC	2 cut(s)	158, 711
BsmI	GAATGC	2 cut(s)	221, 592
BsnI	GGCC	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	244, 706, 732
BspACI	CCGC	1 cut(s)	489
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	3 cut(s)	68, 496, 714
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	2 cut(s)	246, 708
BspPI	GGATC	4 cut(s)	239, 252, 701, 714
BssECI	CCNNGG	2 cut(s)	333, 627
BssMI	GATC	3 cut(s)	244, 706, 732
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	2 cut(s)	333, 627
Bst2BI	CACGAG	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	203, 520
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstC8I	GCNNGC	2 cut(s)	473, 525
BstDEI	CTNAG	3 cut(s)	55, 504, 722
BstF5I	GGATG	2 cut(s)	487, 554
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	3 cut(s)	247, 709, 735
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	3 cut(s)	244, 706, 732
BstMWI	GCNNNNNNNGC	2 cut(s)	520, 677
BstSCI	CCNGG	1 cut(s)	562
BstV1I	GCAGC	1 cut(s)	279
BstX2I	RGATCY	2 cut(s)	244, 706
BstXI	CCANNNNNNTGG	1 cut(s)	605
BstYI	RGATCY	2 cut(s)	244, 706
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	487, 554
BtsI	GCAGTG	2 cut(s)	144, 534
BtsIMutI	CAGTG	2 cut(s)	144, 534
Cac8I	GCNNGC	2 cut(s)	473, 525
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	1 cut(s)	592
Cfr13I	GGNCC	1 cut(s)	45
CviAII	CATG	2 cut(s)	93, 578
CviJI	RGCY	7 cut(s)	47, 54, 240, 292, 385, 452, 503
CviKI_1	RGCY	7 cut(s)	47, 54, 240, 292, 385, 452, 503
DdeI	CTNAG	3 cut(s)	55, 504, 722
DpnI	GATC	3 cut(s)	246, 708, 734
DpnII	GATC	3 cut(s)	244, 706, 732
Eco130I	CCWWGG	2 cut(s)	333, 627
Eco57I	CTGAAG	1 cut(s)	308
EcoT14I	CCWWGG	2 cut(s)	333, 627
ErhI	CCWWGG	2 cut(s)	333, 627
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	2 cut(s)	96, 581
FaiI	YATR	7 cut(s)	50, 80, 94, 310, 312, 469, 579
FaqI	GGGAC	2 cut(s)	158, 711
FatI	CATG	2 cut(s)	92, 577
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	2 cut(s)	494, 541
Fsp4HI	GCNGC	1 cut(s)	293
GlaI	GCGC	1 cut(s)	591
GluI	GCNGC	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	563
HhaI	GCGC	1 cut(s)	592
Hin1II	CATG	2 cut(s)	96, 581
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	1 cut(s)	724
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	392, 532
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	2 cut(s)	578, 650
Hpy8I	GTNNAC	2 cut(s)	392, 532
HpyAV	CCTTC	2 cut(s)	148, 493
HpyCH4III	ACNGT	2 cut(s)	203, 520
HpyCH4IV	ACGT	2 cut(s)	26, 534
HpyCH4V	TGCA	5 cut(s)	149, 295, 302, 471, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	520, 677
HpyF3I	CTNAG	3 cut(s)	55, 504, 722
HpySE526I	ACGT	2 cut(s)	26, 534
Hsp92II	CATG	2 cut(s)	96, 581
HspAI	GCGC	1 cut(s)	590
Kzo9I	GATC	3 cut(s)	244, 706, 732
LmnI	GCTCC	2 cut(s)	382, 640
LpnPI	CCDG	7 cut(s)	42, 198, 392, 576, 635, 688, 734
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	3 cut(s)	472, 571, 641
MaeII	ACGT	2 cut(s)	26, 534
MaeIII	GTNAC	2 cut(s)	232, 550
MalI	GATC	3 cut(s)	246, 708, 734
MboI	GATC	3 cut(s)	244, 706, 732
MboII	GAAGA	1 cut(s)	259
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	2 cut(s)	244, 706
MluCI	AATT	7 cut(s)	33, 177, 296, 371, 494, 621, 645
MlyI	GAGTC	1 cut(s)	733
MnlI	CCTC	6 cut(s)	36, 152, 335, 472, 501, 674
MseI	TTAA	3 cut(s)	165, 411, 594
MslI	CAYNNNNRTG	2 cut(s)	230, 459
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	564
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	2 cut(s)	221, 592
MwoI	GCNNNNNNNGC	2 cut(s)	520, 677
NciI	CCSGG	1 cut(s)	564
NdeII	GATC	3 cut(s)	244, 706, 732
NlaIII	CATG	2 cut(s)	96, 581
NlaIV	GGNNCC	2 cut(s)	246, 708
NmuCI	GTSAC	2 cut(s)	232, 550
OliI	CACNNNNGTG	1 cut(s)	459
PagI	TCATGA	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	2 cut(s)	221, 592
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	1 cut(s)	732
PpsI	GAGTC	1 cut(s)	732
PspN4I	GGNNCC	2 cut(s)	246, 708
PspPI	GGNCC	1 cut(s)	45
PsuI	RGATCY	2 cut(s)	244, 706
RseI	CAYNNNNRTG	2 cut(s)	230, 459
SaqAI	TTAA	3 cut(s)	165, 411, 594
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	3 cut(s)	244, 706, 732
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	733
ScrFI	CCNGG	1 cut(s)	564
SfaNI	GCATC	3 cut(s)	472, 571, 641
SmiMI	CAYNNNNRTG	2 cut(s)	230, 459
Sse9I	AATT	7 cut(s)	33, 177, 296, 371, 494, 621, 645
SsiI	CCGC	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	2 cut(s)	333, 627
TaaI	ACNGT	2 cut(s)	203, 520
TaiI	ACGT	2 cut(s)	29, 537
TaqI	TCGA	3 cut(s)	41, 570, 611
TasI	AATT	7 cut(s)	33, 177, 296, 371, 494, 621, 645
Tru1I	TTAA	3 cut(s)	165, 411, 594
Tru9I	TTAA	3 cut(s)	165, 411, 594
TscAI	CASTG	2 cut(s)	151, 534
TseFI	GTSAC	2 cut(s)	232, 550
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	2 cut(s)	232, 550
TspDTI	ATGAA	6 cut(s)	109, 117, 118, 181, 201, 214
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	151, 534
XapI	RAATTY	3 cut(s)	33, 371, 645
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.