Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

394429 .. 395640

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGATGAGCAATACATGGAGGGACGAACAACATCCGTCCTTCATCAACTTCGTCTCCGCTTTCCTCACCGCAAACTCTTTCCGCCTCAACTTTGTCCCAATTACCCCCGACTTCATTTTCAACTGTGGGGGTTCATCTGTGGCATTCATTTTCATGACTAGCTTGGATTCCAGTACCGTCTCGCAATTCTTCGGCAGATTCGGGATGGAACTCGGCAAGCCAACGTTCGTTCTGGTTAAGGACTTGGAAATGGGGTTTGAGAAGATAACGAAAATAGCTCATTCTCGTGGGGTGTGCAAGCGAGAGGATGCCACAACAAAATTGAAGGCTGAGGTTAGTAGGAAGCAAACAGTGCAAACACCAGGCATATTTCAAAAAGTGATCACAGCCATTCCGGGCATCGACAATCATGATGCAAATGCGCTTAACCAGGCTATCGGATCGATTGATGGAATTGCCAAGGCATCAAAGGAGCACATTATGGAAAACACAGACCTCTCAGCTGACAAGGCACAAGTGCTTTCAAGGTTTTTCAGAGATCCAAAGTTTTACCTCAGTCCTAAGATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

191

Amino Acids

21.17

Weight (kDa)

8.91

Isoelectric Point (pI)

20.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	57, 69, 82
AclI	AACGTT	1 cut(s)	224
AclWI	GGATC	2 cut(s)	448, 533
AfaI	GTAC	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	121, 325, 374, 525
AjnI	CCWGG	2 cut(s)	361, 429
AluBI	AGCT	3 cut(s)	162, 278, 503
AluI	AGCT	3 cut(s)	162, 278, 503
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	2 cut(s)	58, 184
AlwI	GGATC	2 cut(s)	448, 533
AspLEI	GCGC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	58
BauI	CACGAG	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	477
BbvCI	CCTCAGC	1 cut(s)	330
BccI	CCATC	2 cut(s)	199, 443
BciT130I	CCWGG	2 cut(s)	363, 431
BclI	TGATCA	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	58, 184
BfaI	CTAG	1 cut(s)	159
Bme1390I	CCNGG	3 cut(s)	363, 396, 431
BmrFI	CCNGG	3 cut(s)	363, 396, 431
BmsI	GCATC	4 cut(s)	298, 403, 408, 473
Bpu10I	CCTNAGC	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	396
Bsa29I	ATCGAT	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	459
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse1I	ACTGG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	363, 431
BseCI	ATCGAT	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	3 cut(s)	31, 210, 313
BseMII	CTCAG	3 cut(s)	321, 513, 568
BseNI	ACTGG	1 cut(s)	171
BshVI	ATCGAT	1 cut(s)	443
BsiHKAI	GWGCWC	1 cut(s)	477
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	2 cut(s)	35, 80
BsmAI	GTCTC	2 cut(s)	58, 184
BsmBI	CGTCTC	2 cut(s)	58, 184
BsmFI	GGGAC	2 cut(s)	35, 80
BsmI	GAATGC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	381, 440, 538, 564
BspACI	CCGC	3 cut(s)	57, 69, 82
BspCNI	CTCAG	3 cut(s)	322, 512, 567
BspDI	ATCGAT	1 cut(s)	443
BspHI	TCATGA	2 cut(s)	153, 409
BspPI	GGATC	2 cut(s)	448, 533
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	4 cut(s)	381, 440, 538, 564
BssSI	CACGAG	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	363, 431
Bst4CI	ACNGT	3 cut(s)	125, 178, 352
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstC8I	GCNNGC	2 cut(s)	218, 299
BstDEI	CTNAG	4 cut(s)	330, 499, 554, 561
BstF5I	GGATG	3 cut(s)	31, 210, 313
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	4 cut(s)	384, 443, 541, 567
BstMAI	GTCTC	2 cut(s)	58, 184
BstMBI	GATC	4 cut(s)	381, 440, 538, 564
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 509
BstNI	CCWGG	2 cut(s)	363, 431
BstSCI	CCNGG	3 cut(s)	361, 394, 429
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
Bsu15I	ATCGAT	1 cut(s)	443
BsuTUI	ATCGAT	1 cut(s)	443
BtsCI	GGATG	3 cut(s)	31, 210, 313
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	2 cut(s)	218, 299
CciI	TCATGA	2 cut(s)	153, 409
CfoI	GCGC	1 cut(s)	424
ClaI	ATCGAT	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	3 cut(s)	15, 154, 410
CviJI	RGCY	7 cut(s)	162, 220, 278, 329, 389, 434, 503
CviKI_1	RGCY	7 cut(s)	162, 220, 278, 329, 389, 434, 503
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	4 cut(s)	330, 499, 554, 561
DpnI	GATC	4 cut(s)	383, 442, 540, 566
DpnII	GATC	4 cut(s)	381, 440, 538, 564
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	361, 429
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	2 cut(s)	58, 184
FaeI	CATG	3 cut(s)	18, 157, 413
FaiI	YATR	5 cut(s)	16, 155, 368, 411, 482
FaqI	GGGAC	2 cut(s)	35, 80
FatI	CATG	3 cut(s)	14, 153, 409
FbaI	TGATCA	1 cut(s)	381
FokI	GGATG	3 cut(s)	18, 217, 320
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	423
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	3 cut(s)	18, 157, 413
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HinfI	GANTC	2 cut(s)	167, 198
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	440, 536
Hpy188III	TCNNGA	3 cut(s)	154, 202, 410
HpyAV	CCTTC	2 cut(s)	49, 319
HpyCH4III	ACNGT	3 cut(s)	125, 178, 352
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	297, 355, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 509
HpyF3I	CTNAG	4 cut(s)	330, 499, 554, 561
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	3 cut(s)	18, 157, 413
HspAI	GCGC	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	4 cut(s)	381, 440, 538, 564
LmnI	GCTCC	1 cut(s)	472
LpnPI	CCDG	7 cut(s)	184, 218, 348, 375, 408, 416, 443
LweI	GCATC	4 cut(s)	298, 403, 408, 473
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	224
MalI	GATC	4 cut(s)	383, 442, 540, 566
MboI	GATC	4 cut(s)	381, 440, 538, 564
MboII	GAAGA	2 cut(s)	181, 274
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	4 cut(s)	99, 185, 320, 453
MnlI	CCTC	7 cut(s)	12, 74, 95, 298, 325, 506, 563
MseI	TTAA	2 cut(s)	237, 426
MslI	CAYNNNNRTG	2 cut(s)	152, 285
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	3 cut(s)	363, 396, 431
Mva1269I	GAATGC	1 cut(s)	143
MvaI	CCWGG	2 cut(s)	363, 431
MwoI	GCNNNNNNNGC	2 cut(s)	352, 509
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	4 cut(s)	381, 440, 538, 564
NlaIII	CATG	3 cut(s)	18, 157, 413
NmeAIII	GCCGAG	1 cut(s)	192
PagI	TCATGA	2 cut(s)	153, 409
PctI	GAATGC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	167, 198
Psp1406I	AACGTT	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	361, 429
PspGI	CCWGG	2 cut(s)	361, 429
PsuI	RGATCY	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	2 cut(s)	152, 285
SaqAI	TTAA	2 cut(s)	237, 426
Sau3AI	GATC	4 cut(s)	381, 440, 538, 564
ScrFI	CCNGG	3 cut(s)	363, 396, 431
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	8 cut(s)	164, 227, 280, 336, 498, 505, 530, 555
SfaNI	GCATC	4 cut(s)	298, 403, 408, 473
SmiMI	CAYNNNNRTG	2 cut(s)	152, 285
Sse9I	AATT	4 cut(s)	99, 185, 320, 453
SsiI	CCGC	3 cut(s)	57, 69, 82
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	3 cut(s)	361, 394, 429
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	125, 178, 352
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	402, 443
TasI	AATT	4 cut(s)	99, 185, 320, 453
TfiI	GAWTC	2 cut(s)	167, 198
Tru1I	TTAA	2 cut(s)	237, 426
Tru9I	TTAA	2 cut(s)	237, 426
TscAI	CASTG	1 cut(s)	357
TspDTI	ATGAA	5 cut(s)	31, 103, 123, 136, 142
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	357
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.