Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

1724694 .. 1726340

Gene Structure 1647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G001190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAAACCGGCGGATCGGATTCCGGAAAAGGCCACAAATTCAGCTGGGGTTTGTATGATGAGAAACACATGGAGGGATGAACAGCACCCGTCTTTCATAAACTTCATCTCCAATTTCCTCACTGCAAATTCGTTCCGGCTTAAATTTGTCTCAATTCCAGCAGACTTCATTTTCAACTGTGGGGGTTCATCAGTGGCATTTATCTTTGTAACAAGCTTGGATTCAACTAATAACTCACTGAAGCAGCAATTTGCGCATTTCTATGTTATCTGTACCCTCCCAACCAAGGAACAAAATGACTTGTTTGTTCGTTCTTACTTCAATTTCGGATTGGAGCTTGGTAAGCCGGCATTTGTTCTGGTTAAAGACTTAGAGATGGGTTTTGAAAAGATGCTAAGGATAGTTTATGCACGTGGAGTATGCAAGCGAGAGGATGTCACCACAAAATTGAAGGCTCAGAGAGCAATATGTGCAAACCGTGGGCGTGTTTCAAAGAGTGGTCACATCCATACCAGACTTGACAATCATGATGCAAATGCGCTTAACCAAGCAGTTGGATCAATTGAAGCAATTGCCAAGGAATCGAAGGAGCATATTCTGGAAAACACAGACCTTTCAGCTAACAAGGCAGAAGTAATTTCAAGGTTTTTCAGGGATCAAAAGTTTTACCTCAGTCCGAAGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

229

Amino Acids

25.95

Weight (kDa)

9.32

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	3 cut(s)	21, 565, 663
AcsI	RAATTY	3 cut(s)	37, 127, 143
AcuI	CTGAAG	1 cut(s)	260
AcvI	CACGTG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	8 cut(s)	175, 225, 322, 386, 451, 492, 566, 642
AluBI	AGCT	4 cut(s)	44, 216, 337, 620
AluI	AGCT	4 cut(s)	44, 216, 337, 620
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	3 cut(s)	21, 565, 663
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	3 cut(s)	37, 127, 143
AspLEI	GCGC	2 cut(s)	256, 541
AsuHPI	GGTGA	1 cut(s)	430
BbrPI	CACGTG	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
BmsI	GCATC	2 cut(s)	381, 520
Bpu10I	CCTNAGC	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	413
BsaJI	CCNNGG	3 cut(s)	285, 478, 576
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	2 cut(s)	7, 346
BseAI	TCCGGA	1 cut(s)	22
BseDI	CCNNGG	3 cut(s)	285, 478, 576
BseGI	GGATG	3 cut(s)	82, 439, 504
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	470, 685
BseXI	GCAGC	1 cut(s)	256
BseYI	CCCAGC	1 cut(s)	44
BshFI	GGCC	1 cut(s)	32
BsiSI	CCGG	4 cut(s)	8, 23, 136, 347
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	32
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	13, 557, 655, 681
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	2 cut(s)	469, 684
BspEI	TCCGGA	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	526
BspPI	GGATC	3 cut(s)	21, 565, 663
BsrFI	RCCGGY	2 cut(s)	7, 346
BssAI	RCCGGY	2 cut(s)	7, 346
BssECI	CCNNGG	3 cut(s)	285, 478, 576
BssMI	GATC	4 cut(s)	13, 557, 655, 681
BssT1I	CCWWGG	2 cut(s)	285, 576
Bst4CI	ACNGT	2 cut(s)	179, 479
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	348, 425
BstDEI	CTNAG	4 cut(s)	370, 395, 456, 671
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	3 cut(s)	82, 439, 504
BstHHI	GCGC	2 cut(s)	256, 541
BstKTI	GATC	4 cut(s)	16, 560, 658, 684
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	4 cut(s)	13, 557, 655, 681
BstMWI	GCNNNNNNNGC	5 cut(s)	253, 343, 461, 470, 626
BstV1I	GCAGC	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	3 cut(s)	82, 439, 504
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	3 cut(s)	120, 198, 236
Cac8I	GCNNGC	2 cut(s)	348, 425
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	2 cut(s)	256, 541
Cfr10I	RCCGGY	2 cut(s)	7, 346
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	2 cut(s)	69, 527
CviJI	RGCY	8 cut(s)	32, 44, 139, 216, 337, 346, 455, 620
CviKI_1	RGCY	8 cut(s)	32, 44, 139, 216, 337, 346, 455, 620
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	4 cut(s)	370, 395, 456, 671
DpnI	GATC	4 cut(s)	15, 559, 657, 683
DpnII	GATC	4 cut(s)	13, 557, 655, 681
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	285, 576
Eco57I	CTGAAG	1 cut(s)	260
Eco72I	CACGTG	1 cut(s)	413
EcoT14I	CCWWGG	2 cut(s)	285, 576
ErhI	CCWWGG	2 cut(s)	285, 576
FaeI	CATG	2 cut(s)	72, 530
FatI	CATG	2 cut(s)	68, 526
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	3 cut(s)	89, 446, 491
Fsp4HI	GCNGC	1 cut(s)	245
FspI	TGCGCA	1 cut(s)	255
GlaI	GCGC	2 cut(s)	255, 540
GluI	GCNGC	1 cut(s)	245
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	4 cut(s)	8, 23, 136, 347
HhaI	GCGC	2 cut(s)	256, 541
Hin1II	CATG	2 cut(s)	72, 530
Hin6I	GCGC	2 cut(s)	254, 539
HinP1I	GCGC	2 cut(s)	254, 539
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	3 cut(s)	19, 221, 581
HpaII	CCGG	4 cut(s)	8, 23, 136, 347
HphI	GGTGA	1 cut(s)	430
Hpy188I	TCNGA	4 cut(s)	18, 329, 459, 678
Hpy188III	TCNNGA	3 cut(s)	23, 527, 599
HpyAV	CCTTC	2 cut(s)	445, 580
HpyCH4III	ACNGT	2 cut(s)	179, 479
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	5 cut(s)	125, 410, 423, 473, 533
HpyF10VI	GCNNNNNNNGC	5 cut(s)	253, 343, 461, 470, 626
HpyF3I	CTNAG	4 cut(s)	370, 395, 456, 671
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	2 cut(s)	72, 530
HspAI	GCGC	2 cut(s)	254, 539
Kpn2I	TCCGGA	1 cut(s)	22
KroI	GCCGGC	1 cut(s)	346
KroNI	GCCGGC	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	13, 557, 655, 681
LmnI	GCTCC	2 cut(s)	334, 589
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	2 cut(s)	381, 520
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	3 cut(s)	208, 436, 500
MalI	GATC	4 cut(s)	15, 559, 657, 683
MboI	GATC	4 cut(s)	13, 557, 655, 681
MfeI	CAATTG	3 cut(s)	561, 570, 685
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	5 cut(s)	66, 128, 287, 424, 680
MroI	TCCGGA	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	346
MseI	TTAA	3 cut(s)	141, 363, 543
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	4 cut(s)	8, 23, 136, 347
MunI	CAATTG	3 cut(s)	561, 570, 685
MwoI	GCNNNNNNNGC	5 cut(s)	253, 343, 461, 470, 626
NaeI	GCCGGC	1 cut(s)	348
NdeII	GATC	4 cut(s)	13, 557, 655, 681
NgoMIV	GCCGGC	1 cut(s)	346
NlaIII	CATG	2 cut(s)	72, 530
NmuCI	GTSAC	2 cut(s)	436, 500
NsbI	TGCGCA	1 cut(s)	255
PagI	TCATGA	1 cut(s)	526
PdiI	GCCGGC	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	19, 221, 581
PkrI	GCNGC	1 cut(s)	246
PmaCI	CACGTG	1 cut(s)	413
PmlI	CACGTG	1 cut(s)	413
Ppu21I	YACGTR	1 cut(s)	413
PspCI	CACGTG	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	141, 363, 543
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	4 cut(s)	13, 557, 655, 681
SetI	ASST	8 cut(s)	46, 218, 339, 415, 615, 622, 647, 672
SfaNI	GCATC	2 cut(s)	381, 520
SmiMI	CAYNNNNRTG	1 cut(s)	261
SsiI	CCGC	1 cut(s)	11
StyI	CCWWGG	2 cut(s)	285, 576
TaaI	ACNGT	2 cut(s)	179, 479
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	1 cut(s)	584
TfiI	GAWTC	3 cut(s)	19, 221, 581
Tru1I	TTAA	3 cut(s)	141, 363, 543
Tru9I	TTAA	3 cut(s)	141, 363, 543
TscAI	CASTG	3 cut(s)	127, 198, 243
TseFI	GTSAC	2 cut(s)	436, 500
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	2 cut(s)	436, 500
TspDTI	ATGAA	6 cut(s)	17, 85, 93, 94, 157, 177
TspRI	CASTG	3 cut(s)	127, 198, 243
XapI	RAATTY	3 cut(s)	37, 127, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.