Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

1158672 .. 1159337

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG010500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGAAACCGGCGGATCGGATTCCGGCAAAGGCCACAAATTCAGAAATTTTGTGCATCACTGACTTAAACTCTGCGGTGGTTTCGATTGCATTGCAGGACTTCATTTTCAACTGTGGGGGTTCGTCAGTGGCCTTCATCTTTGTCACAAGCTTGGATTCAACTAATGTCTCCCAAATCTTCGGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

62

Amino Acids

6.6

Weight (kDa)

4.78

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AciI	CCGC	2 cut(s)	11, 74
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	37, 45
AgsI	TTSAA	2 cut(s)	109, 159
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	2 cut(s)	30, 129
ApoI	RAATTY	2 cut(s)	37, 45
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BcoDI	GTCTC	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	174
BmsI	GCATC	1 cut(s)	63
Bse118I	RCCGGY	1 cut(s)	7
Bse3DI	GCAATG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	32, 131
BsiSI	CCGG	2 cut(s)	8, 23
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	32, 131
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	2 cut(s)	11, 74
BspANI	GGCC	2 cut(s)	32, 131
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	7
BssMI	GATC	1 cut(s)	13
Bst4CI	ACNGT	1 cut(s)	113
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	32, 131
BtsIMutI	CAGTG	2 cut(s)	57, 132
BveI	ACCTGC	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	7
CviJI	RGCY	3 cut(s)	32, 131, 150
CviKI_1	RGCY	3 cut(s)	32, 131, 150
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
EciI	GGCGGA	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	32, 131
HapII	CCGG	2 cut(s)	8, 23
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	2 cut(s)	19, 155
HpaII	CCGG	2 cut(s)	8, 23
Hpy188I	TCNGA	2 cut(s)	18, 43
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	3 cut(s)	54, 89, 94
Kzo9I	GATC	1 cut(s)	13
LpnPI	CCDG	4 cut(s)	21, 36, 80, 169
LweI	GCATC	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	169
MluCI	AATT	2 cut(s)	37, 45
MseI	TTAA	1 cut(s)	65
MspI	CCGG	2 cut(s)	8, 23
NdeII	GATC	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	19, 155
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	13
SetI	ASST	2 cut(s)	152, 188
SfaNI	GCATC	1 cut(s)	63
SgeI	CNNG	5 cut(s)	20, 35, 107, 159, 163
Sse9I	AATT	2 cut(s)	37, 45
SsiI	CCGC	2 cut(s)	11, 74
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	83
TasI	AATT	2 cut(s)	37, 45
TfiI	GAWTC	2 cut(s)	19, 155
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	2 cut(s)	64, 132
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	17, 91, 124
TspRI	CASTG	2 cut(s)	64, 132
XapI	RAATTY	2 cut(s)	37, 45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.