Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

930123 .. 931735

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG007500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAACCGGCGGTTCGGATTCCGGCAAAGGCCACAAATTCAGCTGGGGTTTGTATGATGAGAAACACATGGAGGGATGAACAGCACCCGTCTTTCATAAACTTCATCTCCAATTTCCTCACTGCAAATTCGTTCCGGCTTAAATTTGTCTCAATTCCAGCAGACTTCATTTTCAACTGTGGGGGTTCATCAGTGGCCTTCATCTTTGTCACAAGCTTGGATTCAACTAATGTCTCCCAAATCTTCGGCAGAACTCAAATACTGAAGCAGCAATTTGCGCATTTCTATGTTATCTGTACCCTCCCAACCAAGGAACAAAATGACTTGTTTGTTCGTTCTTACTTCAATTTCGGATTGGAGCTTGGTAAGCCGGCGTTTGTTCTGGTTAAAGACTTAGAGATGGGTTTTGAAAAGATGCTAAGGATTGTTTATGCACGCGGAGTATGCAAGCGAGAGGATGTCACCACAAAATTGAAGGCTCAGAGAGAGCAATATGTGCAAACCGTGGGCGTGTTTCAAAGAGTGATCACATCCATACCAGGAGTTGACAATCATGATGCAAATGCGCTTAACCAAGCAGTAGGATCAATTGAAGCAATTGCCAAGGAATCGAAGGACCATATTCTGGAAAACACAGACCTTTCAGCAGACAAGGCAGAAGTGCTTTCAAGGTTTTTCAGGGATCAAAAGTTTTACCTCAGTCCCAAGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

238

Amino Acids

26.94

Weight (kDa)

9.16

Isoelectric Point (pI)

28.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_5	PF14520	176 - 221	6.1e-06	Helix-hairpin-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	279
AccB7I	CCANNNNNTGG	1 cut(s)	625
AccII	CGCG	1 cut(s)	438
AciI	CCGC	2 cut(s)	11, 438
AclWI	GGATC	2 cut(s)	592, 690
AcsI	RAATTY	3 cut(s)	37, 127, 143
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	310, 625
AgsI	TTSAA	8 cut(s)	175, 225, 346, 410, 475, 518, 593, 669
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	3 cut(s)	44, 216, 361
AluI	AGCT	3 cut(s)	44, 216, 361
Alw26I	GTCTC	2 cut(s)	154, 238
AlwI	GGATC	2 cut(s)	592, 690
AoxI	GGCC	2 cut(s)	30, 195
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	3 cut(s)	37, 127, 143
AspLEI	GCGC	2 cut(s)	280, 568
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	616
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	540
BclI	TGATCA	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	154, 238
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	1 cut(s)	616
BmgT120I	GGNCC	1 cut(s)	616
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	2 cut(s)	405, 547
Bpu10I	CCTNAGC	1 cut(s)	419
BsaJI	CCNNGG	3 cut(s)	309, 504, 603
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 625
Bse118I	RCCGGY	2 cut(s)	7, 370
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	3 cut(s)	309, 504, 603
BseGI	GGATG	3 cut(s)	82, 463, 530
BseLI	CCNNNNNNNGG	2 cut(s)	310, 625
BseMII	CTCAG	2 cut(s)	494, 712
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	438
BshFI	GGCC	2 cut(s)	32, 197
BsiSI	CCGG	4 cut(s)	8, 23, 136, 371
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	2 cut(s)	310, 625
BsmAI	GTCTC	2 cut(s)	154, 238
BsmFI	GGGAC	1 cut(s)	687
BsnI	GGCC	2 cut(s)	32, 197
Bsp143I	GATC	4 cut(s)	525, 584, 682, 708
BspACI	CCGC	2 cut(s)	11, 438
BspANI	GGCC	2 cut(s)	32, 197
BspCNI	CTCAG	2 cut(s)	493, 711
BspFNI	CGCG	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	553
BspPI	GGATC	2 cut(s)	592, 690
BsrFI	RCCGGY	2 cut(s)	7, 370
BssAI	RCCGGY	2 cut(s)	7, 370
BssECI	CCNNGG	3 cut(s)	309, 504, 603
BssMI	GATC	4 cut(s)	525, 584, 682, 708
BssT1I	CCWWGG	2 cut(s)	309, 603
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	179, 505
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstC8I	GCNNGC	3 cut(s)	372, 436, 449
BstDEI	CTNAG	4 cut(s)	394, 419, 480, 698
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	3 cut(s)	82, 463, 530
BstFNI	CGCG	1 cut(s)	438
BstHHI	GCGC	2 cut(s)	280, 568
BstKTI	GATC	4 cut(s)	528, 587, 685, 711
BstMAI	GTCTC	2 cut(s)	154, 238
BstMBI	GATC	4 cut(s)	525, 584, 682, 708
BstMWI	GCNNNNNNNGC	5 cut(s)	277, 367, 444, 496, 653
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	32, 197
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	3 cut(s)	82, 463, 530
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	120, 198
Cac8I	GCNNGC	3 cut(s)	372, 436, 449
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	2 cut(s)	280, 568
Cfr10I	RCCGGY	2 cut(s)	7, 370
Cfr13I	GGNCC	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	2 cut(s)	69, 554
CviJI	RGCY	8 cut(s)	32, 44, 139, 197, 216, 361, 370, 479
CviKI_1	RGCY	8 cut(s)	32, 44, 139, 197, 216, 361, 370, 479
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	4 cut(s)	394, 419, 480, 698
DpnI	GATC	4 cut(s)	527, 586, 684, 710
DpnII	GATC	4 cut(s)	525, 584, 682, 708
Eco130I	CCWWGG	2 cut(s)	309, 603
Eco47I	GGWCC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	309, 603
ErhI	CCWWGG	2 cut(s)	309, 603
FaeI	CATG	2 cut(s)	72, 557
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	2 cut(s)	68, 553
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	3 cut(s)	89, 470, 517
Fsp4HI	GCNGC	1 cut(s)	269
FspI	TGCGCA	1 cut(s)	279
GlaI	GCGC	2 cut(s)	279, 567
GluI	GCNGC	1 cut(s)	269
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	32, 197
HapII	CCGG	4 cut(s)	8, 23, 136, 371
HhaI	GCGC	2 cut(s)	280, 568
Hin1II	CATG	2 cut(s)	72, 557
Hin6I	GCGC	2 cut(s)	278, 566
HinP1I	GCGC	2 cut(s)	278, 566
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	3 cut(s)	19, 221, 608
HpaII	CCGG	4 cut(s)	8, 23, 136, 371
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	3 cut(s)	18, 353, 483
Hpy188III	TCNNGA	2 cut(s)	554, 626
Hpy8I	GTNNAC	1 cut(s)	547
HpyAV	CCTTC	3 cut(s)	208, 469, 607
HpyCH4III	ACNGT	2 cut(s)	179, 505
HpyCH4V	TGCA	5 cut(s)	125, 434, 447, 499, 560
HpyF10VI	GCNNNNNNNGC	5 cut(s)	277, 367, 444, 496, 653
HpyF3I	CTNAG	4 cut(s)	394, 419, 480, 698
Hsp92II	CATG	2 cut(s)	72, 557
HspAI	GCGC	2 cut(s)	278, 566
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	525, 584, 682, 708
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	405, 547
MaeIII	GTNAC	2 cut(s)	208, 460
MalI	GATC	4 cut(s)	527, 586, 684, 710
MboI	GATC	4 cut(s)	525, 584, 682, 708
MboII	GAAGA	1 cut(s)	235
MfeI	CAATTG	3 cut(s)	588, 597, 712
MnlI	CCTC	5 cut(s)	66, 128, 311, 448, 707
MroNI	GCCGGC	1 cut(s)	370
MseI	TTAA	3 cut(s)	141, 387, 570
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	4 cut(s)	8, 23, 136, 371
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	3 cut(s)	588, 597, 712
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	5 cut(s)	277, 367, 444, 496, 653
NaeI	GCCGGC	1 cut(s)	372
NdeII	GATC	4 cut(s)	525, 584, 682, 708
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	72, 557
NmuCI	GTSAC	2 cut(s)	208, 460
NsbI	TGCGCA	1 cut(s)	279
PagI	TCATGA	1 cut(s)	553
PdiI	GCCGGC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	19, 221, 608
PflMI	CCANNNNNTGG	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	538
PspPI	GGNCC	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	141, 387, 570
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	4 cut(s)	525, 584, 682, 708
Sau96I	GGNCC	1 cut(s)	616
ScrFI	CCNGG	1 cut(s)	540
SetI	ASST	6 cut(s)	46, 218, 363, 642, 674, 699
SfaNI	GCATC	2 cut(s)	405, 547
SinI	GGWCC	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	285
SsiI	CCGC	2 cut(s)	11, 438
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	2 cut(s)	309, 603
TaaI	ACNGT	2 cut(s)	179, 505
TaqI	TCGA	1 cut(s)	611
TfiI	GAWTC	3 cut(s)	19, 221, 608
Tru1I	TTAA	3 cut(s)	141, 387, 570
Tru9I	TTAA	3 cut(s)	141, 387, 570
TscAI	CASTG	2 cut(s)	127, 198
TseFI	GTSAC	2 cut(s)	208, 460
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	2 cut(s)	208, 460
TspDTI	ATGAA	7 cut(s)	17, 85, 93, 94, 157, 177, 190
TspRI	CASTG	2 cut(s)	127, 198
Van91I	CCANNNNNTGG	1 cut(s)	625
VpaK11BI	GGWCC	1 cut(s)	616
XapI	RAATTY	3 cut(s)	37, 127, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.