Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

37076861 .. 37077547

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24701

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCTCCCAAATCTTCGGCAGGTAACCAAATTGTTCTCAATTTTGGCGCCTCGATGAGATTCTGCTTTTTCTTTTTTAACAAGTTTGATGTGAATCATTGTAATTATTGCAGAACTCAAATACTGAAGCAGCAATTTGCACATCTTTATGTTATCTGTACCCTCCCAACCAAAGAGCAAAATGACTTGTTTGTTCGTTCTTACTTCAATTTCGGATTGGAGCTTGGTAAGCCGGCATTTGTTCTGGTTAAAGACTTGGAGATGGGTTTTGAAAAGATGCTAAGGATAGTTTATGCACGCGGAGTATGCAAGCGAGAGGATGTCACCACAAAATTGAAGGCTCAGGTTGGTGTAGTGTCAATACAAACATTAACAATCATATATGTTATACTTGGTTTTGATGATATAGTATGCACATTTCTTTCGCTAAACATCTTGGGGTTTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

150

Amino Acids

17.16

Weight (kDa)

8.94

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	47
AccII	CGCG	1 cut(s)	300
AciI	CCGC	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	208, 272, 337
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	267
Bpu10I	CCTNAGC	2 cut(s)	281, 342
BsaBI	GATNNNNATC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	48
Bse118I	RCCGGY	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	93
BseGI	GGATG	1 cut(s)	325
BseJI	GATNNNNATC	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssNI	GRCGYC	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	234, 298, 311
BstDEI	CTNAG	2 cut(s)	281, 342
BstEII	GGTNACC	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstMAI	GTCTC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 306
BstPI	GGTNACC	1 cut(s)	23
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	325
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	3 cut(s)	234, 298, 311
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	159
CviJI	RGCY	3 cut(s)	223, 232, 341
CviKI_1	RGCY	3 cut(s)	223, 232, 341
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	2 cut(s)	281, 342
DinI	GGCGCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	23
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
FaiI	YATR	9 cut(s)	150, 294, 307, 380, 382, 384, 389, 407, 412
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	131
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	51
HapII	CCGG	1 cut(s)	233
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	2 cut(s)	60, 94
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	331
HpyCH4V	TGCA	5 cut(s)	111, 140, 296, 309, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 306
HpyF3I	CTNAG	2 cut(s)	281, 342
Hsp92I	GRCGYC	1 cut(s)	48
HspAI	GCGC	1 cut(s)	48
KasI	GGCGCC	1 cut(s)	47
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	4 cut(s)	6, 230, 246, 329
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	23, 322
MboII	GAAGA	1 cut(s)	6
MluCI	AATT	6 cut(s)	30, 40, 103, 134, 208, 332
Mly113I	GGCGCC	1 cut(s)	48
MnlI	CCTC	3 cut(s)	61, 173, 310
MroNI	GCCGGC	1 cut(s)	232
MseI	TTAA	3 cut(s)	78, 249, 371
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	229, 306
NaeI	GCCGGC	1 cut(s)	234
NarI	GGCGCC	1 cut(s)	48
NgoMIV	GCCGGC	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	322
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	60, 94
PkrI	GCNGC	1 cut(s)	132
PluTI	GGCGCC	1 cut(s)	51
PspEI	GGTNACC	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	78, 249, 371
SatI	GCNGC	1 cut(s)	131
SetI	ASST	3 cut(s)	25, 225, 348
SfaNI	GCATC	1 cut(s)	267
SfoI	GGCGCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	6 cut(s)	30, 40, 103, 134, 208, 332
SsiI	CCGC	1 cut(s)	300
SspDI	GGCGCC	1 cut(s)	47
TaqI	TCGA	1 cut(s)	53
TasI	AATT	6 cut(s)	30, 40, 103, 134, 208, 332
TfiI	GAWTC	2 cut(s)	60, 94
Tru1I	TTAA	3 cut(s)	78, 249, 371
Tru9I	TTAA	3 cut(s)	78, 249, 371
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.