Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

12109709 .. 12114309

Gene Structure 4601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGATCATCCCACCATGTCATGCCACCACTTGATTGCCCTTCCTAAAAATATGAGAAGACCGAAAATTAAAGCTTATGAATTTGAATACATTTTATTTTGTAATTTAAAAGAAATTTTGTGCATCACTGACTTAAACTCTGCGGTGGTTTCGATTGCATTGCAGGACTTCATTTTCAACTGTGGGGGTTCATCAGTGGCCTTCATCTTTGTCACAAGCTTGGATTCAACTAATGTCTCCCAAATCTTCGGCAGAACTCAAATACTGAAGCAGCAATTTGCACATCTCTATGTTATCTGTACCCTCCCAACCAAAGAGCAAAATGACTTGTTTGTTCGTTCTTACTTCAATTTCGGATTCGAGCTTGGTAAGCCGGCATTTGTTCTGGTTAAAGACTTGGAGATGGGTTTTGAAAAGATGCTAAGGATAGTTTATGCACGCGGAGTATGCAAGCGAGAGGATGTCACCACAAAATTGAAGGCTCAGAGAGAGCAATATGTGCAAACCGTGGGCGTGTTTCAAAGAGTGGTCACATCCATACCAGGACTTGACAATCATGATGCAAATGTTGAACAACAGGATTACAAGAATAAGGACTTGAAAAGTTTTAGGTCTAATATGATTATTTACCATATAAACAAAACATTTGTTGTAGCATTGGTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

222

Amino Acids

25.55

Weight (kDa)

8.97

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	441
AciI	CCGC	2 cut(s)	143, 441
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	80, 114
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	301
AgsI	TTSAA	9 cut(s)	86, 178, 228, 349, 413, 478, 521, 572, 601
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	3 cut(s)	74, 219, 364
AluI	AGCT	3 cut(s)	74, 219, 364
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	2 cut(s)	80, 114
AsuHPI	GGTGA	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	1 cut(s)	397
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	543
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	3 cut(s)	132, 408, 550
BpiI	GAAGAC	1 cut(s)	64
Bpu10I	CCTNAGC	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	507
Bse118I	RCCGGY	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	3 cut(s)	7, 466, 533
BseMI	GCAATG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	2 cut(s)	143, 441
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	556
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	1 cut(s)	4
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	182, 508
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstC8I	GCNNGC	3 cut(s)	375, 439, 452
BstDEI	CTNAG	2 cut(s)	422, 483
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	3 cut(s)	7, 466, 533
BstFNI	CGCG	1 cut(s)	441
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	3 cut(s)	370, 447, 499
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	541
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	283
BstV2I	GAAGAC	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	507
BtsCI	GGATG	3 cut(s)	7, 466, 533
BtsIMutI	CAGTG	2 cut(s)	126, 201
Cac8I	GCNNGC	3 cut(s)	375, 439, 452
CciI	TCATGA	1 cut(s)	556
Cfr10I	RCCGGY	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	3 cut(s)	16, 21, 557
CviJI	RGCY	6 cut(s)	74, 200, 219, 364, 373, 482
CviKI_1	RGCY	6 cut(s)	74, 200, 219, 364, 373, 482
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	2 cut(s)	422, 483
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DraI	TTTAAA	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	541
FaeI	CATG	3 cut(s)	19, 24, 560
FatI	CATG	3 cut(s)	15, 20, 556
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	2 cut(s)	473, 520
Fsp4HI	GCNGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	374
Hin1II	CATG	3 cut(s)	19, 24, 560
HindIII	AAGCTT	2 cut(s)	72, 217
HinfI	GANTC	2 cut(s)	224, 357
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	1 cut(s)	457
Hpy188I	TCNGA	2 cut(s)	356, 486
Hpy188III	TCNNGA	1 cut(s)	557
HpyAV	CCTTC	3 cut(s)	50, 211, 472
HpyCH4III	ACNGT	2 cut(s)	182, 508
HpyCH4V	TGCA	8 cut(s)	123, 158, 163, 281, 437, 450, 502, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	370, 447, 499
HpyF3I	CTNAG	2 cut(s)	422, 483
Hsp92II	CATG	3 cut(s)	19, 24, 560
KroI	GCCGGC	1 cut(s)	373
KroNI	GCCGGC	1 cut(s)	375
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	6 cut(s)	149, 371, 387, 528, 555, 563
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	3 cut(s)	132, 408, 550
MaeIII	GTNAC	3 cut(s)	211, 463, 529
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	2 cut(s)	69, 238
MluCI	AATT	7 cut(s)	66, 80, 103, 114, 275, 349, 473
MnlI	CCTC	2 cut(s)	314, 451
MroNI	GCCGGC	1 cut(s)	373
MseI	TTAA	4 cut(s)	69, 107, 134, 390
MslI	CAYNNNNRTG	1 cut(s)	288
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	3 cut(s)	370, 447, 499
NaeI	GCCGGC	1 cut(s)	375
NdeII	GATC	1 cut(s)	4
NgoMIV	GCCGGC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	19, 24, 560
NmuCI	GTSAC	3 cut(s)	211, 463, 529
PagI	TCATGA	1 cut(s)	556
PdiI	GCCGGC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	224, 357
PkrI	GCNGC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	69, 107, 134, 390
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	543
SetI	ASST	4 cut(s)	76, 221, 366, 614
SfaNI	GCATC	3 cut(s)	132, 408, 550
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	7 cut(s)	66, 80, 103, 114, 275, 349, 473
SsiI	CCGC	2 cut(s)	143, 441
StyD4I	CCNGG	1 cut(s)	541
TaaI	ACNGT	2 cut(s)	182, 508
TaqI	TCGA	2 cut(s)	152, 360
TaqII	GACCGA	1 cut(s)	76
TasI	AATT	7 cut(s)	66, 80, 103, 114, 275, 349, 473
TfiI	GAWTC	2 cut(s)	224, 357
Tru1I	TTAA	4 cut(s)	69, 107, 134, 390
Tru9I	TTAA	4 cut(s)	69, 107, 134, 390
TscAI	CASTG	2 cut(s)	133, 201
TseFI	GTSAC	3 cut(s)	211, 463, 529
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	3 cut(s)	211, 463, 529
TspDTI	ATGAA	4 cut(s)	93, 160, 180, 193
TspRI	CASTG	2 cut(s)	133, 201
XapI	RAATTY	2 cut(s)	80, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.