Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Forward (+)

15206707 .. 15211553

Gene Structure 4847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G012820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGACGTTCTGGTCCATATTCTCGCCCCAAAGAGGAAGGAAACTGCCAAGATAGGCATGCACGGAATTGTAGAGCCCAGCTCTGATTCTCCTTCTTTCTCCGCAAATCCCCGAGACGCCGACAACTCGACAAGCGACAGATGCGAATCATGCTATTGTTCCGGTCTTGTAGCCTGGTTACCAGCCGCGATTTTTCAGGTTATCAAGGACTTCATTTTCAACTGTGGGGGTTCATCAGTGGCCTTCATCTTTGTCACAAGCTTGGATTCAACTAATGTCTCCCAAATCTTCGGCAGAGCTCAAATACTGAAGCAACAATTTGCACATCTCTATGTTATCTGTACCCTCCCAACCAAAGAGCAAAATGACTTGTTCGTTCTTACTTCAAGTGATTTCGGATTGGAGCTTGGTAAGCCGGCATTTGTTCTGGTTAAAGACTTGGAGATGGGTTTTGAAAAGATGCTAAGGATAGTTTATGCACGCGGAGTGGTCACATCCATACCAGGACTTGACAATCATGATGCAAATTTGGATTCATTTAAGACAACACTTGTTGGGAACACAAAGTTGTCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

192

Amino Acids

20.97

Weight (kDa)

5.77

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AccII	CGCG	2 cut(s)	188, 483
AciI	CCGC	3 cut(s)	102, 186, 483
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	4 cut(s)	220, 270, 387, 455
AjnI	CCWGG	2 cut(s)	173, 502
AluBI	AGCT	4 cut(s)	81, 261, 299, 406
AluI	AGCT	4 cut(s)	81, 261, 299, 406
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	2 cut(s)	108, 283
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	1 cut(s)	240
ApoI	RAATTY	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	13
BanII	GRGCYC	2 cut(s)	78, 301
Bbv12I	GWGCWC	1 cut(s)	301
BccI	CCATC	1 cut(s)	439
BciT130I	CCWGG	2 cut(s)	175, 504
BcoDI	GTCTC	2 cut(s)	108, 283
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	2 cut(s)	175, 504
Bme18I	GGWCC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	13
BmrFI	CCNGG	2 cut(s)	175, 504
BmsI	GCATC	3 cut(s)	131, 450, 511
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
Bpu10I	CCTNAGC	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	415
Bse8I	GATNNNNATC	1 cut(s)	145
BseBI	CCWGG	2 cut(s)	175, 504
BseGI	GGATG	1 cut(s)	494
BseJI	GATNNNNATC	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseYI	CCCAGC	1 cut(s)	77
Bsh1236I	CGCG	2 cut(s)	188, 483
BshFI	GGCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	162, 416
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmAI	GTCTC	2 cut(s)	108, 283
BsmBI	CGTCTC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	78, 301
BspACI	CCGC	3 cut(s)	102, 186, 483
BspANI	GGCC	1 cut(s)	242
BspFNI	CGCG	2 cut(s)	188, 483
BspHI	TCATGA	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	415
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	175, 504
Bst4CI	ACNGT	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	59, 417, 481
BstDEI	CTNAG	1 cut(s)	464
BstEII	GGTNACC	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	494
BstFNI	CGCG	2 cut(s)	188, 483
BstMAI	GTCTC	2 cut(s)	108, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 150, 412
BstNI	CCWGG	2 cut(s)	175, 504
BstNSI	RCATGY	1 cut(s)	61
BstPI	GGTNACC	1 cut(s)	177
BstSCI	CCNGG	2 cut(s)	173, 502
BstUI	CGCG	2 cut(s)	188, 483
BsuRI	GGCC	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	59, 417, 481
CciI	TCATGA	1 cut(s)	517
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	13
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	3 cut(s)	58, 150, 518
CviJI	RGCY	9 cut(s)	76, 81, 173, 185, 242, 261, 299, 406, 415
CviKI_1	RGCY	9 cut(s)	76, 81, 173, 185, 242, 261, 299, 406, 415
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	1 cut(s)	464
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	299
Eco24I	GRGCYC	2 cut(s)	78, 301
Eco47I	GGWCC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	111
Eco91I	GGTNACC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	177
EcoRII	CCWGG	2 cut(s)	173, 502
EcoT38I	GRGCYC	2 cut(s)	78, 301
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	3 cut(s)	61, 153, 521
FaiI	YATR	7 cut(s)	18, 59, 151, 333, 477, 500, 519
FatI	CATG	3 cut(s)	57, 149, 517
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	1 cut(s)	481
FriOI	GRGCYC	2 cut(s)	78, 301
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	2 cut(s)	162, 416
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	61, 153, 521
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	4 cut(s)	86, 146, 266, 533
HpaII	CCGG	2 cut(s)	162, 416
Hpy188I	TCNGA	2 cut(s)	85, 398
Hpy188III	TCNNGA	1 cut(s)	518
HpyAV	CCTTC	3 cut(s)	31, 102, 253
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	4 cut(s)	61, 323, 479, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 150, 412
HpyF3I	CTNAG	1 cut(s)	464
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	61, 153, 521
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
LmnI	GCTCC	1 cut(s)	403
LweI	GCATC	3 cut(s)	131, 450, 511
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	3 cut(s)	177, 253, 490
MboII	GAAGA	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	78, 301
MluCI	AATT	3 cut(s)	66, 317, 526
MnlI	CCTC	2 cut(s)	27, 356
MroNI	GCCGGC	1 cut(s)	415
MseI	TTAA	2 cut(s)	432, 540
MslI	CAYNNNNRTG	1 cut(s)	330
MspI	CCGG	2 cut(s)	162, 416
MspR9I	CCNGG	2 cut(s)	175, 504
MvaI	CCWGG	2 cut(s)	175, 504
MvnI	CGCG	2 cut(s)	188, 483
MwoI	GCNNNNNNNGC	3 cut(s)	141, 150, 412
NaeI	GCCGGC	1 cut(s)	417
NgoMIV	GCCGGC	1 cut(s)	415
NlaIII	CATG	3 cut(s)	61, 153, 521
NmuCI	GTSAC	2 cut(s)	253, 490
NspI	RCATGY	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	61
PagI	TCATGA	1 cut(s)	517
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	86, 146, 266, 533
PkrI	GCNGC	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	173, 502
PspEI	GGTNACC	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	173, 502
PspPI	GGNCC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	330
SacI	GAGCTC	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	432, 540
SatI	GCNGC	1 cut(s)	186
Sau96I	GGNCC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	175, 504
SduI	GDGCHC	2 cut(s)	78, 301
SetI	ASST	6 cut(s)	9, 83, 201, 263, 301, 408
SfaNI	GCATC	3 cut(s)	131, 450, 511
SinI	GGWCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	330
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	3 cut(s)	66, 317, 526
SsiI	CCGC	3 cut(s)	102, 186, 483
SstI	GAGCTC	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	173, 502
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	128
TasI	AATT	3 cut(s)	66, 317, 526
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	4 cut(s)	86, 146, 266, 533
Tru1I	TTAA	2 cut(s)	432, 540
Tru9I	TTAA	2 cut(s)	432, 540
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	2 cut(s)	253, 490
Tsp45I	GTSAC	2 cut(s)	253, 490
TspDTI	ATGAA	4 cut(s)	202, 222, 235, 525
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.