Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001637.1

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

11795 .. 12919

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001637.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgaaaccggcggatcggattccggcaaaggccacaaattcaggtaagtttcctttcacattgtaccgatcccgctcgttttcgtttcttagcttttctttcttgttcgttactccaatatttgctctgacgtttccaccggtgttccgtccggacttcattttcaactgtgggggttcatcagtggccttcatctttgtcacaagcttggattcaactaatgtctcccaaatcttcggcagaactcaaatactgaagcagcaatttgcgcatttctatgttatctgtaccctcccaaccaaggagcaaaatgacttgtttgttcgttcttacttcaatttcggattggagcttggtaagccggcatttgttctggttaaagacttggagatgggttttgaaaagatgctaaggatagtttatgcacgcggaggtaaatcttgttctctaaagctcagtcactttaaggatttcccacgaaaattttctgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

164

Amino Acids

18.77

Weight (kDa)

9.82

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	75
AccII	CGCG	1 cut(s)	429
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	3 cut(s)	11, 73, 429
AclWI	GGATC	2 cut(s)	21, 63
AcsI	RAATTY	2 cut(s)	37, 482
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	2 cut(s)	65, 289
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgeI	ACCGGT	1 cut(s)	139
AgsI	TTSAA	4 cut(s)	166, 216, 337, 401
AluBI	AGCT	4 cut(s)	93, 207, 352, 454
AluI	AGCT	4 cut(s)	93, 207, 352, 454
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	2 cut(s)	21, 63
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	2 cut(s)	30, 186
ApeKI	GCWGC	1 cut(s)	259
ApoI	RAATTY	2 cut(s)	37, 482
AsiGI	ACCGGT	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	229
BisI	GCNGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	261
BmsI	GCATC	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	2 cut(s)	139, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	3 cut(s)	7, 139, 361
BseAI	TCCGGA	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	469, 480
BseXI	GCAGC	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	2 cut(s)	32, 188
BshTI	ACCGGT	1 cut(s)	139
BsiSI	CCGG	5 cut(s)	8, 23, 140, 152, 362
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	32, 188
Bsp13I	TCCGGA	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	13, 68
BspACI	CCGC	3 cut(s)	11, 73, 429
BspANI	GGCC	2 cut(s)	32, 188
BspCNI	CTCAG	2 cut(s)	468, 481
BspEI	TCCGGA	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	429
BspPI	GGATC	2 cut(s)	21, 63
BsrBI	CCGCTC	1 cut(s)	75
BsrFI	RCCGGY	3 cut(s)	7, 139, 361
BssAI	RCCGGY	3 cut(s)	7, 139, 361
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	13, 68
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	363, 427
BstDEI	CTNAG	4 cut(s)	89, 410, 455, 489
BstFNI	CGCG	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	16, 71
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	2 cut(s)	13, 68
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 358
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	32, 188
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	363, 427
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	3 cut(s)	7, 139, 361
Csp6I	GTAC	2 cut(s)	64, 288
CspAI	ACCGGT	1 cut(s)	139
CviJI	RGCY	7 cut(s)	32, 93, 188, 207, 352, 361, 454
CviKI_1	RGCY	7 cut(s)	32, 93, 188, 207, 352, 361, 454
CviQI	GTAC	2 cut(s)	64, 288
DdeI	CTNAG	4 cut(s)	89, 410, 455, 489
DpnI	GATC	2 cut(s)	15, 70
DpnII	GATC	2 cut(s)	13, 68
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaiI	YATR	2 cut(s)	279, 423
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	260
FspI	TGCGCA	1 cut(s)	270
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	32, 188
HapII	CCGG	5 cut(s)	8, 23, 140, 152, 362
HhaI	GCGC	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	2 cut(s)	19, 212
HpaII	CCGG	5 cut(s)	8, 23, 140, 152, 362
Hpy188I	TCNGA	4 cut(s)	18, 129, 344, 490
Hpy188III	TCNNGA	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 358
HpyF3I	CTNAG	4 cut(s)	89, 410, 455, 489
HpySE526I	ACGT	1 cut(s)	131
HspAI	GCGC	1 cut(s)	269
Kpn2I	TCCGGA	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	13, 68
LmnI	GCTCC	2 cut(s)	304, 349
LpnPI	CCDG	7 cut(s)	21, 27, 36, 153, 165, 359, 375
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	396
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	3 cut(s)	109, 199, 458
MalI	GATC	2 cut(s)	15, 70
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	2 cut(s)	13, 68
MboII	GAAGA	1 cut(s)	226
MluCI	AATT	4 cut(s)	37, 263, 337, 482
MnlI	CCTC	2 cut(s)	302, 425
MroI	TCCGGA	1 cut(s)	151
MroNI	GCCGGC	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	484
MseI	TTAA	2 cut(s)	378, 465
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	5 cut(s)	8, 23, 140, 152, 362
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	2 cut(s)	268, 358
NaeI	GCCGGC	1 cut(s)	363
NdeII	GATC	2 cut(s)	13, 68
NgoMIV	GCCGGC	1 cut(s)	361
NmuCI	GTSAC	2 cut(s)	199, 458
NsbI	TGCGCA	1 cut(s)	270
PdiI	GCCGGC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	484
PfeI	GAWTC	2 cut(s)	19, 212
PinAI	ACCGGT	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	261
PsrI	GAACNNNNNNTAC	2 cut(s)	427, 459
RsaI	GTAC	2 cut(s)	65, 289
RsaNI	GTAC	2 cut(s)	64, 288
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	378, 465
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	2 cut(s)	13, 68
SetI	ASST	7 cut(s)	46, 95, 134, 209, 354, 436, 456
SfaNI	GCATC	1 cut(s)	396
SgrAI	CRCCGGYG	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	4 cut(s)	37, 263, 337, 482
SsiI	CCGC	3 cut(s)	11, 73, 429
SspI	AATATT	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	134
TasI	AATT	4 cut(s)	37, 263, 337, 482
TfiI	GAWTC	2 cut(s)	19, 212
Tru1I	TTAA	2 cut(s)	378, 465
Tru9I	TTAA	2 cut(s)	378, 465
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	199, 458
TseI	GCWGC	1 cut(s)	259
Tsp45I	GTSAC	2 cut(s)	199, 458
TspDTI	ATGAA	4 cut(s)	17, 148, 168, 181
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	189
XapI	RAATTY	2 cut(s)	37, 482
XmnI	GAANNNNTTC	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.