Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

889538 .. 891394

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00851.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAACCGACGGATCGGATTCCGGCAAAGGCCTGTAATTCCGCTGGGGTTTGTCTGATGAGAAACGCATGGAGAGACGAACAGCATCCATCTTTCATAAACTTCATCTCCAATTTCCTCGCTGCAAATTCTTTCCGGCTTAACTTTGCCTCAATTCCAGCAGACTTCATTTTCAACTGTGGAGGTTCATCAGTGGCATTCATCTTTGTCACAAGCTTGGATTCAACTAATGTCTCCGAAATCTTCGCCAGAACTCAATTACTGAAGCAGCAATTTGCACATCTCTATGTTATCTGTACCCTCCCAACCAAGGAGCAAAATGACTTGTTTGTTCGTTCTTACTTCAATTCCGGATTGGAGCTTGGTAAGCCGGCATTTGTTCCGGTTAAAGACTTAGAGATGGGTTTTGAGAAGATGCTAAGGATAGCTTATGCTCGAGGAGTATGCAAGCGAGAGGATGTCACCACAAAATTGAAGGCACAGAGAGAGCAATATGTGCAAACAGCAGGTGTATTTCAAAGAGTGGTCACATCTATACCAGGAATTGATAATCATGATGCAAATGCGCTTAACCAAGCAGTAGGATCAATTGAAGCAATTGCTAAGGAATCGAAGGAGCATATTCTGGAAAACACAGACCTTTCAGCTGACAAGGCAGAAGTGCTTTCAAGGTTTTTCAGGGATCCAAAGTTTTACCTCAGTCCCAAGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

239

Amino Acids

26.7

Weight (kDa)

8.56

Isoelectric Point (pI)

32.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_5	PF14520	201 - 246	4e-06	Helix-hairpin-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	497
AccIII	TCCGGA	1 cut(s)	350
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	4 cut(s)	21, 592, 677, 690
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	7 cut(s)	175, 225, 346, 475, 518, 593, 669
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	4 cut(s)	216, 361, 428, 647
AluI	AGCT	4 cut(s)	216, 361, 428, 647
Alw26I	GTCTC	2 cut(s)	69, 238
AlwI	GGATC	4 cut(s)	21, 592, 677, 690
Ama87I	CYCGRG	1 cut(s)	435
Aor13HI	TCCGGA	1 cut(s)	350
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	122, 268
ApoI	RAATTY	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	568
AsuHPI	GGTGA	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	682
BbvI	GCAGC	2 cut(s)	109, 280
BccI	CCATC	2 cut(s)	97, 394
BcgI	CGANNNNNNTGC	2 cut(s)	426, 460
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	2 cut(s)	69, 238
BfuAI	ACCTGC	1 cut(s)	497
BisI	GCNGC	2 cut(s)	123, 269
BlsI	GCNGC	2 cut(s)	124, 270
Bme1390I	CCNGG	1 cut(s)	540
BmeT110I	CYCGRG	1 cut(s)	435
BmiI	GGNNCC	1 cut(s)	684
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	94, 405, 547
Bpu10I	CCTNAGC	2 cut(s)	419, 603
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	2 cut(s)	350, 382
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	370
BseAI	TCCGGA	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	85, 463
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	712
BseRI	GAGGAG	1 cut(s)	453
BseXI	GCAGC	2 cut(s)	109, 280
BseYI	CCCAGC	1 cut(s)	44
BshFI	GGCC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	5 cut(s)	23, 136, 351, 371, 383
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	2 cut(s)	69, 238
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	687
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	435
Bsp13I	TCCGGA	1 cut(s)	350
Bsp143I	GATC	4 cut(s)	13, 584, 682, 708
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	711
BspEI	TCCGGA	1 cut(s)	350
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	684
BspMI	ACCTGC	1 cut(s)	497
BspPI	GGATC	4 cut(s)	21, 592, 677, 690
BsrFI	RCCGGY	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	13, 584, 682, 708
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstC8I	GCNNGC	2 cut(s)	372, 449
BstDEI	CTNAG	4 cut(s)	394, 419, 603, 698
BstF5I	GGATG	2 cut(s)	85, 463
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	4 cut(s)	16, 587, 685, 711
BstMAI	GTCTC	2 cut(s)	69, 238
BstMBI	GATC	4 cut(s)	13, 584, 682, 708
BstMWI	GCNNNNNNNGC	3 cut(s)	367, 496, 653
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstV1I	GCAGC	2 cut(s)	109, 280
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	85, 463
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	497
Cac8I	GCNNGC	2 cut(s)	372, 449
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	2 cut(s)	69, 554
CviJI	RGCY	7 cut(s)	32, 139, 216, 361, 370, 428, 647
CviKI_1	RGCY	7 cut(s)	32, 139, 216, 361, 370, 428, 647
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	4 cut(s)	394, 419, 603, 698
DpnI	GATC	4 cut(s)	15, 586, 684, 710
DpnII	GATC	4 cut(s)	13, 584, 682, 708
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	2 cut(s)	72, 557
FaiI	YATR	9 cut(s)	70, 98, 288, 432, 445, 495, 536, 555, 621
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	2 cut(s)	68, 553
Fnu4HI	GCNGC	2 cut(s)	123, 269
FokI	GGATG	2 cut(s)	72, 470
Fsp4HI	GCNGC	2 cut(s)	123, 269
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	2 cut(s)	123, 269
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	5 cut(s)	23, 136, 351, 371, 383
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	2 cut(s)	72, 557
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	3 cut(s)	19, 221, 608
HpaII	CCGG	5 cut(s)	23, 136, 351, 371, 383
HphI	GGTGA	1 cut(s)	454
Hpy188I	TCNGA	3 cut(s)	18, 57, 238
Hpy188III	TCNNGA	3 cut(s)	351, 554, 626
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	469, 607
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	5 cut(s)	125, 278, 447, 499, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	367, 496, 653
HpyF3I	CTNAG	4 cut(s)	394, 419, 603, 698
Hsp92II	CATG	2 cut(s)	72, 557
HspAI	GCGC	1 cut(s)	566
Kpn2I	TCCGGA	1 cut(s)	350
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Kzo9I	GATC	4 cut(s)	13, 584, 682, 708
LmnI	GCTCC	3 cut(s)	313, 358, 616
Lsp1109I	GCAGC	2 cut(s)	109, 280
LweI	GCATC	3 cut(s)	94, 405, 547
MaeIII	GTNAC	3 cut(s)	208, 460, 526
MalI	GATC	4 cut(s)	15, 586, 684, 710
MboI	GATC	4 cut(s)	13, 584, 682, 708
MboII	GAAGA	2 cut(s)	235, 424
MfeI	CAATTG	3 cut(s)	588, 597, 712
MflI	RGATCY	1 cut(s)	682
MnlI	CCTC	7 cut(s)	128, 160, 176, 311, 431, 448, 707
MroI	TCCGGA	1 cut(s)	350
MroNI	GCCGGC	1 cut(s)	370
MseI	TTAA	3 cut(s)	141, 387, 570
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	2 cut(s)	44, 647
MspI	CCGG	5 cut(s)	23, 136, 351, 371, 383
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	3 cut(s)	588, 597, 712
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	3 cut(s)	367, 496, 653
NaeI	GCCGGC	1 cut(s)	372
NdeII	GATC	4 cut(s)	13, 584, 682, 708
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	72, 557
NlaIV	GGNNCC	1 cut(s)	684
NmuCI	GTSAC	3 cut(s)	208, 460, 526
PaeR7I	CTCGAG	1 cut(s)	435
PagI	TCATGA	1 cut(s)	553
PaqCI	CACCTGC	1 cut(s)	497
PceI	AGGCCT	1 cut(s)	32
PctI	GAATGC	1 cut(s)	197
PdiI	GCCGGC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	19, 221, 608
PkrI	GCNGC	2 cut(s)	124, 270
Psp6I	CCWGG	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	684
PspXI	VCTCGAGB	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	682
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	141, 387, 570
SatI	GCNGC	2 cut(s)	123, 269
Sau3AI	GATC	4 cut(s)	13, 584, 682, 708
ScrFI	CCNGG	1 cut(s)	540
SetI	ASST	9 cut(s)	187, 218, 363, 430, 511, 642, 649, 674, 699
SfaNI	GCATC	3 cut(s)	94, 405, 547
Sfr274I	CTCGAG	1 cut(s)	435
SlaI	CTCGAG	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	2 cut(s)	436, 611
TfiI	GAWTC	3 cut(s)	19, 221, 608
Tru1I	TTAA	3 cut(s)	141, 387, 570
Tru9I	TTAA	3 cut(s)	141, 387, 570
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	3 cut(s)	208, 460, 526
TseI	GCWGC	2 cut(s)	122, 268
Tsp45I	GTSAC	3 cut(s)	208, 460, 526
TspDTI	ATGAA	6 cut(s)	17, 85, 94, 157, 177, 190
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	1 cut(s)	127
XhoI	CTCGAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.