Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

1254213 .. 1255608

Gene Structure 1396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1003900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCGAACGTGAAAGAAACAGCTCAATTTCCACAAAAATCTATGAATTCAGGTGGTGGTGGTGGGGTTTGTATGATGAGCAATACATGGAGGGACGAACAACATCCGTCCTTCATCAACTTCGTCTCCGCTTTCCTCGCCGCAAACTCCTTCCGCCTCAACTTTGTCCCAATTACCCCCGACTTCATTTTCAACTGTGGGGGTTCATCTGTGGCATTCATTTTCATGACTAGCTTGGATTCCGGTACCATCTCGCAATTCTTCGGCAGAGTTCAGAAGCTGAAGCTGCAATTTGCAAATCTATACGTTGTCATCACGCTCCCAACCAAGGAGCAAAACGATTTGTTTGTTCGTTCTTACTTCAAATTCGGGATGGAACTTGGCAAGCCAACGTTCGTTCAGGTTAAGGACTTGGAAATGGGGTTCGAGAAGATAACGAAAATAGCTCATTCTCGTGGGGTGTGCAAGCGAGAGGATGCCACAACAAAATTGAAGGCTGAGAGGAAGCAAACAGTGCAAACACCAGGCATACTGAGAAAAGTGATCACAGCCATTCCGGGCATCGACAATCATGATGCAAACGCGGTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

198

Amino Acids

21.9

Weight (kDa)

9.45

Isoelectric Point (pI)

25.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	1 cut(s)	584
AciI	CCGC	4 cut(s)	129, 141, 154, 584
AclI	AACGTT	1 cut(s)	392
AcsI	RAATTY	2 cut(s)	46, 365
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	2 cut(s)	247, 588
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	3 cut(s)	193, 364, 493
AjnI	CCWGG	1 cut(s)	523
AloI	GAACNNNNNNTCC	2 cut(s)	407, 439
AluBI	AGCT	5 cut(s)	23, 234, 280, 286, 446
AluI	AGCT	5 cut(s)	23, 234, 280, 286, 446
Alw26I	GTCTC	1 cut(s)	130
AlwNI	CAGNNNCTG	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	2 cut(s)	46, 365
Asp718I	GGTACC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	558
BanI	GGYRCC	1 cut(s)	245
BauI	CACGAG	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	2 cut(s)	257, 367
BciT130I	CCWGG	1 cut(s)	525
BclI	TGATCA	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	558
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	141, 287
BlsI	GCNGC	2 cut(s)	142, 288
Bme1390I	CCNGG	2 cut(s)	525, 558
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	525, 558
BmsI	GCATC	3 cut(s)	466, 565, 570
BpuMI	CCSGG	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	3 cut(s)	103, 378, 481
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	489, 524
BseXI	GCAGC	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	584
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	243, 557
BslFI	GGGAC	2 cut(s)	107, 152
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	2 cut(s)	107, 152
BsmI	GAATGC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	543
BspACI	CCGC	4 cut(s)	129, 141, 154, 584
BspCNI	CTCAG	2 cut(s)	490, 525
BspFNI	CGCG	1 cut(s)	584
BspHI	TCATGA	2 cut(s)	225, 571
BspLI	GGNNCC	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	1 cut(s)	543
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	197, 514
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	386, 467
BstDEI	CTNAG	2 cut(s)	498, 533
BstF5I	GGATG	3 cut(s)	103, 378, 481
BstFNI	CGCG	1 cut(s)	584
BstKTI	GATC	1 cut(s)	546
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	543
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 286, 514
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	2 cut(s)	523, 556
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	1 cut(s)	273
BtsCI	GGATG	3 cut(s)	103, 378, 481
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	2 cut(s)	386, 467
CaiI	CAGNNNCTG	1 cut(s)	280
CciI	TCATGA	2 cut(s)	225, 571
Csp6I	GTAC	2 cut(s)	246, 587
CviAII	CATG	3 cut(s)	87, 226, 572
CviJI	RGCY	8 cut(s)	23, 234, 280, 286, 388, 446, 497, 551
CviKI_1	RGCY	8 cut(s)	23, 234, 280, 286, 388, 446, 497, 551
CviQI	GTAC	2 cut(s)	246, 587
DdeI	CTNAG	2 cut(s)	498, 533
DpnI	GATC	1 cut(s)	545
DpnII	GATC	1 cut(s)	543
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	3 cut(s)	90, 229, 575
FaiI	YATR	7 cut(s)	44, 74, 88, 227, 304, 530, 573
FaqI	GGGAC	2 cut(s)	107, 152
FatI	CATG	3 cut(s)	86, 225, 571
FbaI	TGATCA	1 cut(s)	543
Fnu4HI	GCNGC	2 cut(s)	141, 287
FokI	GGATG	3 cut(s)	90, 385, 488
Fsp4HI	GCNGC	2 cut(s)	141, 287
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	2 cut(s)	141, 287
HapII	CCGG	2 cut(s)	243, 557
Hin1II	CATG	3 cut(s)	90, 229, 575
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	2 cut(s)	243, 557
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	4 cut(s)	226, 370, 427, 572
HpyAV	CCTTC	3 cut(s)	121, 160, 487
HpyCH4III	ACNGT	2 cut(s)	197, 514
HpyCH4IV	ACGT	3 cut(s)	9, 306, 392
HpyCH4V	TGCA	5 cut(s)	289, 296, 465, 517, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 286, 514
HpyF3I	CTNAG	2 cut(s)	498, 533
HpySE526I	ACGT	3 cut(s)	9, 306, 392
Hsp92II	CATG	3 cut(s)	90, 229, 575
KpnI	GGTACC	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	1 cut(s)	543
LmnI	GCTCC	2 cut(s)	324, 331
LpnPI	CCDG	6 cut(s)	36, 256, 386, 510, 537, 570
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	3 cut(s)	466, 565, 570
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	3 cut(s)	9, 306, 392
MalI	GATC	1 cut(s)	545
MboI	GATC	1 cut(s)	543
MboII	GAAGA	2 cut(s)	253, 442
MluCI	AATT	7 cut(s)	26, 46, 171, 257, 290, 365, 488
MnlI	CCTC	5 cut(s)	84, 146, 167, 466, 495
MseI	TTAA	2 cut(s)	405, 592
MslI	CAYNNNNRTG	2 cut(s)	224, 453
MspI	CCGG	2 cut(s)	243, 557
MspR9I	CCNGG	2 cut(s)	525, 558
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	3 cut(s)	137, 286, 514
NciI	CCSGG	1 cut(s)	558
NdeII	GATC	1 cut(s)	543
NlaIII	CATG	3 cut(s)	90, 229, 575
NlaIV	GGNNCC	1 cut(s)	247
PagI	TCATGA	2 cut(s)	225, 571
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	142, 288
Psp1406I	AACGTT	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	280
RsaI	GTAC	2 cut(s)	247, 588
RsaNI	GTAC	2 cut(s)	246, 587
RseI	CAYNNNNRTG	2 cut(s)	224, 453
SaqAI	TTAA	2 cut(s)	405, 592
SatI	GCNGC	2 cut(s)	141, 287
Sau3AI	GATC	1 cut(s)	543
ScrFI	CCNGG	2 cut(s)	525, 558
SfaNI	GCATC	3 cut(s)	466, 565, 570
SmiMI	CAYNNNNRTG	2 cut(s)	224, 453
Sse9I	AATT	7 cut(s)	26, 46, 171, 257, 290, 365, 488
SsiI	CCGC	4 cut(s)	129, 141, 154, 584
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	523, 556
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	197, 514
TaiI	ACGT	3 cut(s)	12, 309, 395
TaqI	TCGA	2 cut(s)	426, 564
TasI	AATT	7 cut(s)	26, 46, 171, 257, 290, 365, 488
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	2 cut(s)	405, 592
Tru9I	TTAA	2 cut(s)	405, 592
TscAI	CASTG	1 cut(s)	519
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	6 cut(s)	59, 103, 175, 195, 208, 214
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	519
XapI	RAATTY	2 cut(s)	46, 365
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.