Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015396.1

Orthogroup ID

OG0005285

Physical Location & Seq

Genomic Coordinates Reverse (-)

17969 .. 18523

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015396.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggtgtcgattgcattgcaggacttcattttcaactgtgggggttcatcagtggcatttatctttgtaacaagcttggattcaactaatgtctctgaaatcttcgccagaactcaaatactgaagcagcaatttgcgcatttctatgttatctgtaccctcccaaccaaggaacaaaatgacttgtttgttcgttcttacttcaatttcggattggagcttggtaagccggcatttgttctggttaaagacttggagatgggttttgaaaagatgctgaggatagtttatgcacgcggaggtaaatcttgttctctaaagctcagtcactttaaggatttcccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0000712 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010520 GO:0010564 GO:0010604 GO:0010638 GO:0010845 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0034293 GO:0034641 GO:0035825 GO:0040020 GO:0043170 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045787 GO:0045836 GO:0045911 GO:0045935 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048518 GO:0048522 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051304 GO:0051307 GO:0051321 GO:0051445 GO:0051446 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0060255 GO:0060631 GO:0060903 GO:0061982 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090068 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HHH_2 HHH_5

Protein Analysis

115

Amino Acids

13.05

Weight (kDa)

8.49

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12790
fragaria_vesca	FvH4_2g00851 FvH4_2g00851
malus_domestica	MD05G1003900.v1.1 MD05G1004600.v1.1
prunus_persica	Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1 Prupe.8G007100_v2.0.a1
pyrus_communis	pycom05g00340
rosa_chinensis	RchiOBHm_Chr6g0251241 RchiOBHm_Chr6g0275321
rosa_laevigata	RLG00000015471
rosa_multiflora	Rmu_sc0001637.1_g000004 Rmu_sc0015396.1_g000004
rosa_roxburghii	Rroxscaffold_7G00216890
rosa_rugosa	Rorug05G0501100
rosa_samantha	Rh6AG010500 Rh6BG001500 Rh6BG001600 Rh6CG007500 Rh6DG007900
rosa_wichuraiana	Rw2G011930 Rw5G012820 Rw6G001020 Rw6G001130 Rw6G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	138
AccII	CGCG	1 cut(s)	297
AciI	CCGC	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	4 cut(s)	34, 84, 205, 269
AluBI	AGCT	3 cut(s)	75, 220, 322
AluI	AGCT	3 cut(s)	75, 220, 322
Alw26I	GTCTC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	139
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	253
BcgI	CGANNNNNNTGC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	97
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
BmsI	GCATC	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	2 cut(s)	269, 337
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	97
BspACI	CCGC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	270, 336
BspFNI	CGCG	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	231, 295
BstDEI	CTNAG	2 cut(s)	278, 323
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 226
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	231, 295
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	1 cut(s)	345
CviJI	RGCY	4 cut(s)	75, 220, 229, 322
CviKI_1	RGCY	4 cut(s)	75, 220, 229, 322
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	278, 323
Eco130I	CCWWGG	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	348
FaiI	YATR	3 cut(s)	147, 291, 346
FatI	CATG	1 cut(s)	344
Fnu4HI	GCNGC	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	128
FspI	TGCGCA	1 cut(s)	138
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	128
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	1 cut(s)	348
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	97, 212
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	14, 19, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 226
HpyF3I	CTNAG	2 cut(s)	278, 323
Hsp92II	CATG	1 cut(s)	348
HspAI	GCGC	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	229
KroNI	GCCGGC	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	4 cut(s)	5, 121, 227, 243
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	67, 326
MboII	GAAGA	1 cut(s)	94
MluCI	AATT	2 cut(s)	131, 205
MnlI	CCTC	3 cut(s)	170, 273, 293
MroNI	GCCGGC	1 cut(s)	229
MseI	TTAA	2 cut(s)	246, 333
MslI	CAYNNNNRTG	1 cut(s)	144
MspI	CCGG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	136, 226
NaeI	GCCGGC	1 cut(s)	231
NgoMIV	GCCGGC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	326
NsbI	TGCGCA	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	295, 327
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	246, 333
SatI	GCNGC	1 cut(s)	128
SetI	ASST	4 cut(s)	77, 222, 304, 324
SfaNI	GCATC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	2 cut(s)	131, 205
SsiI	CCGC	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	8
TasI	AATT	2 cut(s)	131, 205
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	246, 333
Tru9I	TTAA	2 cut(s)	246, 333
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	16, 36
TspRI	CASTG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.