AT1G12990

Glycosyl transferase, family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004922
Physical Location & Seq
Forward (+)
4433605 .. 4436102
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12990.1

Sequence Viewer

Length: 1179 bp
ATGTGGTGGATGATGGGAGAAGCTGGTGGGCATTACTGTTCTAAGAAGACTGATGATATCTGCGGCGGTGTTTGTAGTCAGGAACCTGGAAGATTCTTCAGCTTTTCTAGACTTTGTTGTGCTCTTCGTGGTGTTGATATGAAGACTTATATCTTCTTATTAGTGATTGTTCCCACATGTGTACTCGCTGGCTATGTCCACGGTCAGAAGATTTCTTACTTTCTCCGGCCTTTATGGGAATCACCACCTAAACCTTTTCATGACATTCCTCATTACTACCACGAGAACGCTTCTATGGAGACTCTTTGTAAACTCCATGGCTGGGGTGTTCGAGACTACCCTAGACGAGTTTATGATGCGGTTTTGTTCAGTAACGAGCTTGATATCCTCGCTGTTCGTTGGAGAGAATTGTTTCCTTACATCACTCAGTTTGTCCTCCTTGAATCAAACACGACGTTCACTGGCTTGCCTAAGCCTCTTGTCTTTGCTGCTCACCGAGATGAGTTCAAGTTTATTGAGTCACGCTTGACTTATGGTACTGTTGGTGGAAGATTTGTCAAAGGGCAGAATCCGTTTTACGAAGAGGCGTATCAGCGGGTAGCTCTTGATCAGCTTCTGAGAATCGCTGGGATTACTGATGATGACTTGTTGTTAATGTCTGATGTCGATGAGATTCCAAGTAGACACACCATTAACCTTTTGAGATGGTGCGATGAGATCCCGAAGATACTTCATCTGCGCCTCAAGAACTATCTTTACTCGTTTGAATTCCTTGTTGATAACAAAAGCTGGAGAGCTTCCATCCACAGATATGAGACGGGTAAGACACGGTATGCTCATTATCGACAGTCTGATGAAATCTTGGCGGATGCAGGATGGCATTGTAGCTTTTGCTTCCGACGAATCAGTGAGTTTATATTCAAGATGAAAGCTTATAGCCATAATGACAGAGTGAGGTTTGGTCATTTCTTGAATCCTAAGAGAGTTCAAAGAGTTATATGCAAAGGAGCTGATCTTTTCGATATGCTCCCTGAAGAGTATACCTTCAAGGAGATAATAGGAAAAATGGGTCCAATCCCGCATTCTTTCTCAGCTGTTCATCTTCCTTCGTATCTCCTGGAAAACGCGGATAAGTACAGATTTCTCTTGCCGGGAAATTGCATAAGAGAAAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glyco_transf_17

Protein Analysis

392

Amino Acids

45.92

Weight (kDa)

8.17

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 44 - 390 3.2e-185 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 682, 1040
AccII CGCG 1 cut(s) 1127
AciI CCGC 7 cut(s) 63, 66, 359, 595, 866, 1079, 1127
AclWI GGATC 1 cut(s) 712
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 2 cut(s) 82, 1053
AfaI GTAC 3 cut(s) 183, 538, 1136
AfiI CCNNNNNNNGG 1 cut(s) 322
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 7 cut(s) 443, 508, 767, 922, 973, 989, 1048
AjnI CCWGG 2 cut(s) 85, 1116
AjuI GAANNNNNNNTTGG 2 cut(s) 1066, 1098
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 3 cut(s) 293, 327, 809
AlwI GGATC 1 cut(s) 712
AlwNI CAGNNNCTG 1 cut(s) 616
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 1 cut(s) 767
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 1 cut(s) 741
AspS9I GGNCC 1 cut(s) 1070
AsuC2I CCSGG 1 cut(s) 1152
AsuHPI GGTGA 2 cut(s) 234, 485
AvaII GGWCC 1 cut(s) 1070
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BauI CACGAG 1 cut(s) 281
BbsI GAAGAC 2 cut(s) 53, 149
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 475
BccI CCATC 4 cut(s) 7, 699, 809, 870
BciT130I CCWGG 2 cut(s) 87, 1118
BclI TGATCA 1 cut(s) 607
BcnI CCSGG 1 cut(s) 1152
BcoDI GTCTC 3 cut(s) 293, 327, 809
BfaI CTAG 2 cut(s) 108, 342
BisI GCNGC 2 cut(s) 64, 489
BlsI GCNGC 2 cut(s) 65, 490
Bme1390I CCNGG 3 cut(s) 87, 1118, 1152
Bme18I GGWCC 1 cut(s) 1070
BmgT120I GGNCC 1 cut(s) 1070
BmiI GGNNCC 2 cut(s) 84, 1071
BmrFI CCNGG 3 cut(s) 87, 1118, 1152
BmsI GCATC 2 cut(s) 346, 859
BpiI GAAGAC 2 cut(s) 53, 149
BpmI CTGGAG 1 cut(s) 811
Bpu10I CCTNAGC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 728
BpuMI CCSGG 1 cut(s) 1152
BsaJI CCNNGG 2 cut(s) 199, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 466
BseBI CCWGG 2 cut(s) 87, 1118
BseDI CCNNGG 2 cut(s) 199, 316
BseGI GGATG 4 cut(s) 15, 801, 874, 881
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 3 cut(s) 440, 608, 1104
BseNI ACTGG 1 cut(s) 466
BseXI GCAGC 1 cut(s) 475
BseYI CCCAGC 2 cut(s) 321, 626
Bsh1236I CGCG 1 cut(s) 1127
BshFI GGCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 2 cut(s) 226, 1151
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 3 cut(s) 293, 327, 809
BsmBI CGTCTC 1 cut(s) 809
BsmI GAATGC 1 cut(s) 1081
BsnI GGCC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 3 cut(s) 607, 717, 1012
Bsp19I CCATGG 1 cut(s) 316
BspACI CCGC 7 cut(s) 63, 66, 359, 595, 866, 1079, 1127
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 3 cut(s) 439, 609, 1103
BspFNI CGCG 1 cut(s) 1127
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 84, 1071
BspPI GGATC 1 cut(s) 712
BspQI GCTCTTC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 199, 316
BssMI GATC 3 cut(s) 607, 717, 1012
BssNAI GTATAC 1 cut(s) 1041
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 316
Bst1107I GTATAC 1 cut(s) 1041
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 87, 1118
Bst4CI ACNGT 5 cut(s) 38, 203, 541, 831, 849
Bst6I CTCTTC 3 cut(s) 129, 576, 1029
BstC8I GCNNGC 2 cut(s) 190, 467
BstDEI CTNAG 6 cut(s) 42, 426, 471, 617, 978, 1090
BstDSI CCRYGG 2 cut(s) 199, 316
BstF5I GGATG 4 cut(s) 15, 801, 874, 881
BstFNI CGCG 1 cut(s) 1127
BstHHI GCGC 1 cut(s) 741
BstKTI GATC 3 cut(s) 610, 720, 1015
BstMAI GTCTC 3 cut(s) 293, 327, 809
BstMBI GATC 3 cut(s) 607, 717, 1012
BstNI CCWGG 2 cut(s) 87, 1118
BstNSI RCATGY 1 cut(s) 180
BstSCI CCNGG 3 cut(s) 85, 1116, 1150
BstUI CGCG 1 cut(s) 1127
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 2 cut(s) 53, 149
BstX2I RGATCY 1 cut(s) 717
BstYI RGATCY 1 cut(s) 717
BstZ17I GTATAC 1 cut(s) 1041
BsuRI GGCC 1 cut(s) 229
BtgI CCRYGG 2 cut(s) 199, 316
BtgZI GCGATG 1 cut(s) 726
BtsCI GGATG 4 cut(s) 15, 801, 874, 881
BtsIMutI CAGTG 2 cut(s) 459, 913
Cac8I GCNNGC 2 cut(s) 190, 467
CaiI CAGNNNCTG 1 cut(s) 616
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 741
Cfr13I GGNCC 1 cut(s) 1070
Csp6I GTAC 3 cut(s) 182, 537, 1135
CviAII CATG 3 cut(s) 177, 260, 317
CviQI GTAC 3 cut(s) 182, 537, 1135
DdeI CTNAG 6 cut(s) 42, 426, 471, 617, 978, 1090
DpnI GATC 3 cut(s) 609, 719, 1014
DpnII GATC 3 cut(s) 607, 717, 1012
Eam1104I CTCTTC 3 cut(s) 129, 576, 1029
EarI CTCTTC 3 cut(s) 129, 576, 1029
EciI GGCGGA 1 cut(s) 881
Eco130I CCWWGG 1 cut(s) 316
Eco32I GATATC 2 cut(s) 58, 385
Eco47I GGWCC 1 cut(s) 1070
Eco57I CTGAAG 2 cut(s) 82, 1053
EcoRI GAATTC 1 cut(s) 767
EcoRII CCWGG 2 cut(s) 85, 1116
EcoRV GATATC 2 cut(s) 58, 385
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 809
FaeI CATG 3 cut(s) 180, 263, 320
FatI CATG 3 cut(s) 176, 259, 316
FauI CCCGC 2 cut(s) 588, 1086
FbaI TGATCA 1 cut(s) 607
FblI GTMKAC 2 cut(s) 682, 1040
Fnu4HI GCNGC 2 cut(s) 64, 489
FokI GGATG 4 cut(s) 22, 788, 881, 888
Fsp4HI GCNGC 2 cut(s) 64, 489
FspBI CTAG 2 cut(s) 108, 342
GlaI GCGC 1 cut(s) 740
GluI GCNGC 2 cut(s) 64, 489
GsaI CCCAGC 2 cut(s) 325, 630
GsuI CTGGAG 1 cut(s) 811
HaeIII GGCC 1 cut(s) 229
HapII CCGG 2 cut(s) 226, 1151
HhaI GCGC 1 cut(s) 741
Hin1II CATG 3 cut(s) 180, 263, 320
Hin6I GCGC 1 cut(s) 739
HinP1I GCGC 1 cut(s) 739
HindIII AAGCTT 1 cut(s) 930
HpaII CCGG 2 cut(s) 226, 1151
HphI GGTGA 2 cut(s) 234, 485
Hpy166II GTNNAC 6 cut(s) 182, 199, 311, 459, 683, 1041
Hpy188I TCNGA 5 cut(s) 207, 618, 661, 853, 899
Hpy188III TCNNGA 9 cut(s) 80, 108, 260, 332, 605, 721, 745, 922, 970
Hpy8I GTNNAC 6 cut(s) 182, 199, 311, 459, 683, 1041
Hpy99I CGWCG 2 cut(s) 457, 903
HpyAV CCTTC 2 cut(s) 1054, 1116
HpyCH4III ACNGT 5 cut(s) 38, 203, 541, 831, 849
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 3 cut(s) 872, 1002, 1161
HpyF3I CTNAG 6 cut(s) 42, 426, 471, 617, 978, 1090
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 3 cut(s) 180, 263, 320
HspAI GCGC 1 cut(s) 739
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 3 cut(s) 607, 717, 1012
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 2 cut(s) 1007, 1032
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 2 cut(s) 346, 859
MaeI CTAG 2 cut(s) 108, 342
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 2 cut(s) 371, 519
MalI GATC 3 cut(s) 609, 719, 1014
MboI GATC 3 cut(s) 607, 717, 1012
MflI RGATCY 1 cut(s) 717
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 3 cut(s) 407, 767, 1156
MlyI GAGTC 2 cut(s) 295, 527
MmeI TCCRAC 2 cut(s) 380, 922
MnlI CCTC 7 cut(s) 279, 398, 446, 486, 577, 752, 948
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 2 cut(s) 653, 693
MslI CAYNNNNRTG 2 cut(s) 498, 810
MspA1I CMGCKG 2 cut(s) 595, 1094
MspI CCGG 2 cut(s) 226, 1151
MspR9I CCNGG 3 cut(s) 87, 1118, 1152
Mva1269I GAATGC 1 cut(s) 1081
MvaI CCWGG 2 cut(s) 87, 1118
MvnI CGCG 1 cut(s) 1127
NciI CCSGG 1 cut(s) 1152
NcoI CCATGG 1 cut(s) 316
NdeII GATC 3 cut(s) 607, 717, 1012
NlaIII CATG 3 cut(s) 180, 263, 320
NlaIV GGNNCC 2 cut(s) 84, 1071
NmuCI GTSAC 1 cut(s) 519
NspI RCATGY 1 cut(s) 180
PagI TCATGA 1 cut(s) 259
PciI ACATGT 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 129
PctI GAATGC 1 cut(s) 1081
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 8 cut(s) 93, 239, 443, 568, 621, 673, 903, 973
PfoI TCCNGGA 1 cut(s) 1116
PkrI GCNGC 2 cut(s) 65, 490
PleI GAGTC 2 cut(s) 295, 526
PpsI GAGTC 2 cut(s) 295, 526
PscI ACATGT 1 cut(s) 176
Psp6I CCWGG 2 cut(s) 85, 1116
PspFI CCCAGC 2 cut(s) 321, 626
PspGI CCWGG 2 cut(s) 85, 1116
PspN4I GGNNCC 2 cut(s) 84, 1071
PspPI GGNCC 1 cut(s) 1070
PsrI GAACNNNNNNTAC 2 cut(s) 740, 772
PstNI CAGNNNCTG 1 cut(s) 616
PsuI RGATCY 1 cut(s) 717
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 3 cut(s) 183, 538, 1136
RsaNI GTAC 3 cut(s) 182, 537, 1135
RseI CAYNNNNRTG 2 cut(s) 498, 810
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 653, 693
SatI GCNGC 2 cut(s) 64, 489
Sau3AI GATC 3 cut(s) 607, 717, 1012
Sau96I GGNCC 1 cut(s) 1070
SchI GAGTC 2 cut(s) 295, 527
ScrFI CCNGG 3 cut(s) 87, 1118, 1152
SduI GDGCHC 1 cut(s) 124
SfaNI GCATC 2 cut(s) 346, 859
SinI GGWCC 1 cut(s) 1070
SmiMI CAYNNNNRTG 2 cut(s) 498, 810
SmlI CTYRAG 1 cut(s) 743
SmoI CTYRAG 1 cut(s) 743
Sse9I AATT 3 cut(s) 407, 767, 1156
SsiI CCGC 7 cut(s) 63, 66, 359, 595, 866, 1079, 1127
SspMI CTAG 2 cut(s) 108, 342
StyD4I CCNGG 3 cut(s) 85, 1116, 1150
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 5 cut(s) 38, 203, 541, 831, 849
TaiI ACGT 1 cut(s) 458
TaqI TCGA 4 cut(s) 331, 666, 844, 1020
TasI AATT 3 cut(s) 407, 767, 1156
TatI WGTACW 2 cut(s) 181, 1134
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 8 cut(s) 93, 239, 443, 568, 621, 673, 903, 973
Tru1I TTAA 2 cut(s) 653, 693
Tru9I TTAA 2 cut(s) 653, 693
TscAI CASTG 2 cut(s) 466, 913
TseFI GTSAC 1 cut(s) 519
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 519
TspDTI ATGAA 6 cut(s) 155, 248, 722, 870, 941, 1088
TspGWI ACGGA 1 cut(s) 561
TspRI CASTG 2 cut(s) 466, 913
VpaK11BI GGWCC 1 cut(s) 1070
XapI RAATTY 1 cut(s) 767
XbaI TCTAGA 1 cut(s) 107
XceI RCATGY 1 cut(s) 180
XmiI GTMKAC 2 cut(s) 682, 1040
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 2 cut(s) 108, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.