Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004922

Physical Location & Seq

Genomic Coordinates Reverse (-)

5672559 .. 5674476

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTGGTGGATGATGGCTGAGGGAGGGGGCCATTACTGCTCTAAGAAGACTGATGATATCTGCGGCAATGTTTGCGGCCAGGAATCAGGCAGAATGTTGAGCATGTCAAGAGTTCGCTGCATTCTACGTGGATTTGACTTCAAAGTTCTCCTCATTCTGTTTACACTTATTCCGATGTGTGTCTTTGGCATTTACGTGCATGGACAGAAGATCTCATACTTCTTGCGGCCGCTATGGGAATCGCCACCTAAACCTTTCCATGACATTCCACACTATTATCACGAGAATGTGTCCATGGAGAACCTCTGCAAGCTTCATGGTTGGGGGATCCGTGAGTACCCTAGGCGTGTTTTTGATGCCGTGTTGTTCAGTAATGAGATGGACATCCTTACCATAAGATGGAAAGAGTTGTATCCCTACGTAACGCAGTTTGTTCTCCTTGAATCAAATTCAACATTTACTGGATTTCCAAAGCCTCTGTTCTTCTCCCGTTATCGCGAGCAGTTCAAGTTTGTGGAGCCCCGATTAACTTATGGGACTGTTGGAGGAAGATTCAAGAGAGGGGAAAATCCATTTGTTGAGGAGGCATATCAACGAGTAGCACTGGACCAGCTTCTCAATATAGCTGGTATTACTGAGGACGACTTGTTGATAATGTCTGACGTTGATGAGATCGATCCAAGCAGACACACCATCAATCTTCTGAGGTGGTGTGACGAAGTTCCTCAAATCTTGCATCTTCAGTTGAAGAACTATCTCTATTCCTTTGAGTTTCTGGTGGACAATAACAGTTGGAGAGCTTCAGTACACAGGTACCGGGAAGGGGAGACGAGATATGCACACTATCGCCAGACAGATGACATCTTAGCAGATGCAGGGTGGCATTGTAGCTTTTGTTTCCGCTATATCAGTGAGTTCATCTTTAAGATGAAAGCATACAGCCATTACGATAGAGTCAGGTTTTCAAAGTATCTAAACCCAGAAAGAGTTCAGAAAGTGATCTCCAAGGGGTCTGATTTATTTGATATGCTTCCTGAAGAGTACACCTTCAAGGAAATCATCGGGAAAATGGGACCTATTCCTCATTCCTTCTCTGGTGTCCATCTTCCATCCTTTCTGTTGGAGAATGCAGAGAAGTACAAATTTCTTTTGCCTGGGAATTGCAGAAGAGAGAGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0003830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0008375 GO:0012505 GO:0016020 GO:0016021 GO:0016740 GO:0016757 GO:0016758 GO:0031090 GO:0031224 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791 GO:0140096 GO:0140103

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

394

Amino Acids

46.44

Weight (kDa)

7.21

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12990 AT1G67880
fragaria_vesca	FvH4_4g25670 FvH4_4g25670 FvH4_7g20170
malus_domestica	MD13G1100100.v1.1 MD16G1101100.v1.1
prunus_persica	Prupe.1G245800_v2.0.a1
pyrus_communis	pycom13g08780 pycom16g08550
rosa_chinensis	RchiOBHm_Chr1g0364131 RchiOBHm_Chr4g0433111
rosa_laevigata	RLG00000006785 RLG00000027513
rosa_multiflora	Rmu_sc0000071.1_g000017 Rmu_ssc0000475.1_g000002
rosa_roxburghii	Rroxscaffold_4G00292610 Rroxscaffold_5G00374580
rosa_rugosa	Rorug01G0313800 Rorug04G0265400
rosa_samantha	Rh1AG321300 Rh1BG284500 Rh1CG300900 Rh1DG315900 Rh4AG319500 Rh4BG327700 Rh4CG343100 Rh4DG322900
rosa_wichuraiana	Rw1G028490 Rw4G027760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	813
AccB1I	GGYRCC	1 cut(s)	813
AccB7I	CCANNNNNTGG	1 cut(s)	399
AccII	CGCG	1 cut(s)	498
AciI	CCGC	5 cut(s)	63, 75, 226, 230, 901
AclWI	GGATC	3 cut(s)	322, 335, 671
AcoI	YGGCCR	2 cut(s)	76, 227
AcsI	RAATTY	2 cut(s)	448, 1142
AcuI	CTGAAG	3 cut(s)	725, 786, 1056
AfaI	GTAC	5 cut(s)	338, 807, 815, 1043, 1139
AfiI	CCNNNNNNNGG	2 cut(s)	399, 823
AgsI	TTSAA	8 cut(s)	142, 443, 453, 508, 556, 748, 966, 1051
AjnI	CCWGG	2 cut(s)	78, 1153
AluBI	AGCT	5 cut(s)	313, 613, 626, 800, 891
AluI	AGCT	5 cut(s)	313, 613, 626, 800, 891
Alw26I	GTCTC	1 cut(s)	821
AlwI	GGATC	3 cut(s)	322, 335, 671
AoxI	GGCC	3 cut(s)	28, 76, 227
ApeKI	GCWGC	1 cut(s)	117
ApoI	RAATTY	2 cut(s)	448, 1142
Asp700I	GAANNNNTTC	1 cut(s)	987
Asp718I	GGTACC	1 cut(s)	813
AspA2I	CCTAGG	1 cut(s)	341
AspS9I	GGNCC	3 cut(s)	28, 607, 1073
AsuC2I	CCSGG	1 cut(s)	818
AvaII	GGWCC	2 cut(s)	607, 1073
AvrII	CCTAGG	1 cut(s)	341
BaeI	ACNNNNGTAYC	2 cut(s)	797, 830
BamHI	GGATCC	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	813
BanII	GRGCYC	1 cut(s)	522
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	6 cut(s)	7, 373, 393, 701, 1110, 1117
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	2 cut(s)	80, 1155
BciVI	GTATCC	1 cut(s)	423
BcnI	CCSGG	1 cut(s)	818
BcoDI	GTCTC	1 cut(s)	821
BfaI	CTAG	1 cut(s)	342
BfuI	GTATCC	1 cut(s)	423
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	5 cut(s)	64, 76, 118, 227, 230
BlnI	CCTAGG	1 cut(s)	341
BlsI	GCNGC	5 cut(s)	65, 77, 119, 228, 231
Bme1390I	CCNGG	3 cut(s)	80, 818, 1155
Bme18I	GGWCC	2 cut(s)	607, 1073
BmgT120I	GGNCC	3 cut(s)	28, 607, 1073
BmiI	GGNNCC	5 cut(s)	29, 329, 519, 815, 1074
BmrFI	CCNGG	3 cut(s)	80, 818, 1155
BmsI	GCATC	3 cut(s)	346, 745, 862
BpiI	GAAGAC	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	818
Bsa29I	ATCGAT	1 cut(s)	675
BsaAI	YACGTR	3 cut(s)	128, 196, 421
BsaBI	GATNNNNATC	1 cut(s)	383
BsaJI	CCNNGG	4 cut(s)	294, 341, 1005, 1154
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 823
Bse1I	ACTGG	2 cut(s)	466, 609
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	383
BseBI	CCWGG	2 cut(s)	80, 1155
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	4 cut(s)	294, 341, 1005, 1154
BseGI	GGATG	3 cut(s)	15, 384, 1109
BseJI	GATNNNNATC	1 cut(s)	383
BseLI	CCNNNNNNNGG	2 cut(s)	399, 823
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	3 cut(s)	9, 627, 695
BseNI	ACTGG	2 cut(s)	466, 609
BseRI	GAGGAG	2 cut(s)	140, 596
BseX3I	CGGCCG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	498
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	3 cut(s)	30, 78, 229
BshNI	GGYRCC	1 cut(s)	813
BshVI	ATCGAT	1 cut(s)	675
BsiEI	CGRYCG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	817
BslFI	GGGAC	2 cut(s)	550, 1086
BslI	CCNNNNNNNGG	2 cut(s)	399, 823
BsmAI	GTCTC	1 cut(s)	821
BsmBI	CGTCTC	1 cut(s)	821
BsmFI	GGGAC	2 cut(s)	550, 1086
BsmI	GAATGC	2 cut(s)	120, 1132
BsnI	GGCC	3 cut(s)	30, 78, 229
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	5 cut(s)	210, 327, 672, 676, 999
Bsp19I	CCATGG	1 cut(s)	294
Bsp68I	TCGCGA	1 cut(s)	498
BspACI	CCGC	5 cut(s)	63, 75, 226, 230, 901
BspANI	GGCC	3 cut(s)	30, 78, 229
BspCNI	CTCAG	3 cut(s)	10, 628, 696
BspDI	ATCGAT	1 cut(s)	675
BspFNI	CGCG	1 cut(s)	498
BspLI	GGNNCC	5 cut(s)	29, 329, 519, 815, 1074
BspPI	GGATC	3 cut(s)	322, 335, 671
BspT107I	GGYRCC	1 cut(s)	813
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	466, 609
BssECI	CCNNGG	4 cut(s)	294, 341, 1005, 1154
BssMI	GATC	5 cut(s)	210, 327, 672, 676, 999
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	3 cut(s)	294, 341, 1005
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	2 cut(s)	80, 1155
Bst4CI	ACNGT	2 cut(s)	541, 791
Bst6I	CTCTTC	2 cut(s)	1032, 1162
BstAPI	GCANNNNNTGC	1 cut(s)	72
BstBAI	YACGTR	3 cut(s)	128, 196, 421
BstC8I	GCNNGC	2 cut(s)	311, 500
BstDEI	CTNAG	5 cut(s)	18, 42, 636, 704, 865
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	3 cut(s)	15, 384, 1109
BstFNI	CGCG	1 cut(s)	498
BstKTI	GATC	5 cut(s)	213, 330, 675, 679, 1002
BstMAI	GTCTC	1 cut(s)	821
BstMBI	GATC	5 cut(s)	210, 327, 672, 676, 999
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 72
BstNI	CCWGG	2 cut(s)	80, 1155
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	3 cut(s)	78, 816, 1153
BstSNI	TACGTA	1 cut(s)	421
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	2 cut(s)	210, 327
BstYI	RGATCY	2 cut(s)	210, 327
BstZI	CGGCCG	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	675
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	3 cut(s)	30, 78, 229
BsuTUI	ATCGAT	1 cut(s)	675
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	3 cut(s)	15, 384, 1109
BtsIMutI	CAGTG	2 cut(s)	602, 916
BtuMI	TCGCGA	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	311, 500
CciNI	GCGGCCGC	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	28, 607, 1073
ClaI	ATCGAT	1 cut(s)	675
Csp6I	GTAC	5 cut(s)	337, 806, 814, 1042, 1138
CviAII	CATG	5 cut(s)	103, 200, 260, 295, 317
CviQI	GTAC	5 cut(s)	337, 806, 814, 1042, 1138
DdeI	CTNAG	5 cut(s)	18, 42, 636, 704, 865
DpnI	GATC	5 cut(s)	212, 329, 674, 678, 1001
DpnII	GATC	5 cut(s)	210, 327, 672, 676, 999
EaeI	YGGCCR	2 cut(s)	76, 227
EagI	CGGCCG	1 cut(s)	227
Eam1104I	CTCTTC	2 cut(s)	1032, 1162
EarI	CTCTTC	2 cut(s)	1032, 1162
EclXI	CGGCCG	1 cut(s)	227
Eco105I	TACGTA	1 cut(s)	421
Eco130I	CCWWGG	3 cut(s)	294, 341, 1005
Eco24I	GRGCYC	1 cut(s)	522
Eco32I	GATATC	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	607, 1073
Eco52I	CGGCCG	1 cut(s)	227
Eco57I	CTGAAG	3 cut(s)	725, 786, 1056
EcoO109I	RGGNCCY	1 cut(s)	1073
EcoRII	CCWGG	2 cut(s)	78, 1153
EcoRV	GATATC	1 cut(s)	58
EcoT14I	CCWWGG	3 cut(s)	294, 341, 1005
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	3 cut(s)	294, 341, 1005
Esp3I	CGTCTC	1 cut(s)	821
FaeI	CATG	5 cut(s)	106, 203, 263, 298, 320
FaqI	GGGAC	2 cut(s)	550, 1086
FatI	CATG	5 cut(s)	102, 199, 259, 294, 316
Fnu4HI	GCNGC	5 cut(s)	64, 76, 118, 227, 230
FokI	GGATG	3 cut(s)	22, 371, 1096
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	5 cut(s)	64, 76, 118, 227, 230
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	5 cut(s)	64, 76, 118, 227, 230
HaeIII	GGCC	3 cut(s)	30, 78, 229
HapII	CCGG	1 cut(s)	817
Hin1II	CATG	5 cut(s)	106, 203, 263, 298, 320
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	5 cut(s)	83, 239, 443, 552, 954
HpaII	CCGG	1 cut(s)	817
Hpy166II	GTNNAC	4 cut(s)	162, 781, 808, 1044
Hpy188I	TCNGA	5 cut(s)	174, 661, 705, 993, 1015
Hpy188III	TCNNGA	6 cut(s)	108, 281, 497, 556, 1034, 1063
Hpy8I	GTNNAC	4 cut(s)	162, 781, 808, 1044
HpyAV	CCTTC	3 cut(s)	815, 1057, 1099
HpyCH4III	ACNGT	2 cut(s)	541, 791
HpyCH4IV	ACGT	4 cut(s)	127, 195, 420, 663
HpyCH4V	TGCA	8 cut(s)	120, 199, 309, 736, 839, 875, 1130, 1164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 72
HpyF3I	CTNAG	5 cut(s)	18, 42, 636, 704, 865
HpySE526I	ACGT	4 cut(s)	127, 195, 420, 663
Hsp92II	CATG	5 cut(s)	106, 203, 263, 298, 320
KpnI	GGTACC	1 cut(s)	817
Kzo9I	GATC	5 cut(s)	210, 327, 672, 676, 999
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	3 cut(s)	346, 745, 862
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	4 cut(s)	127, 195, 420, 663
MaeIII	GTNAC	2 cut(s)	421, 713
MalI	GATC	5 cut(s)	212, 329, 674, 678, 1001
MboI	GATC	5 cut(s)	210, 327, 672, 676, 999
MflI	RGATCY	2 cut(s)	210, 327
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	3 cut(s)	448, 1142, 1159
MlyI	GAGTC	1 cut(s)	963
MmeI	TCCRAC	3 cut(s)	523, 773, 1101
MroXI	GAANNNNTTC	1 cut(s)	987
MseI	TTAA	2 cut(s)	527, 924
MslI	CAYNNNNRTG	2 cut(s)	194, 285
MspI	CCGG	1 cut(s)	817
MspR9I	CCNGG	3 cut(s)	80, 818, 1155
Mva1269I	GAATGC	2 cut(s)	120, 1132
MvaI	CCWGG	2 cut(s)	80, 1155
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	2 cut(s)	36, 72
NciI	CCSGG	1 cut(s)	818
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	5 cut(s)	210, 327, 672, 676, 999
NlaIII	CATG	5 cut(s)	106, 203, 263, 298, 320
NlaIV	GGNNCC	5 cut(s)	29, 329, 519, 815, 1074
NmuCI	GTSAC	1 cut(s)	713
NotI	GCGGCCGC	1 cut(s)	227
NruI	TCGCGA	1 cut(s)	498
NspI	RCATGY	1 cut(s)	106
PctI	GAATGC	2 cut(s)	120, 1132
PdmI	GAANNNNTTC	1 cut(s)	987
PfeI	GAWTC	4 cut(s)	83, 239, 443, 552
PflMI	CCANNNNNTGG	1 cut(s)	399
PkrI	GCNGC	5 cut(s)	65, 77, 119, 228, 231
PleI	GAGTC	1 cut(s)	962
PpsI	GAGTC	1 cut(s)	962
Ppu21I	YACGTR	3 cut(s)	128, 196, 421
PpuMI	RGGWCCY	1 cut(s)	1073
Psp5II	RGGWCCY	1 cut(s)	1073
Psp6I	CCWGG	2 cut(s)	78, 1153
PspGI	CCWGG	2 cut(s)	78, 1153
PspN4I	GGNNCC	5 cut(s)	29, 329, 519, 815, 1074
PspPI	GGNCC	3 cut(s)	28, 607, 1073
PspPPI	RGGWCCY	1 cut(s)	1073
PsuI	RGATCY	2 cut(s)	210, 327
RruI	TCGCGA	1 cut(s)	498
RsaI	GTAC	5 cut(s)	338, 807, 815, 1043, 1139
RsaNI	GTAC	5 cut(s)	337, 806, 814, 1042, 1138
RseI	CAYNNNNRTG	2 cut(s)	194, 285
SaqAI	TTAA	2 cut(s)	527, 924
SatI	GCNGC	5 cut(s)	64, 76, 118, 227, 230
Sau3AI	GATC	5 cut(s)	210, 327, 672, 676, 999
Sau96I	GGNCC	3 cut(s)	28, 607, 1073
SchI	GAGTC	1 cut(s)	963
ScrFI	CCNGG	3 cut(s)	80, 818, 1155
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	3 cut(s)	346, 745, 862
SinI	GGWCC	2 cut(s)	607, 1073
SmiMI	CAYNNNNRTG	2 cut(s)	194, 285
SnaBI	TACGTA	1 cut(s)	421
Sse9I	AATT	3 cut(s)	448, 1142, 1159
SsiI	CCGC	5 cut(s)	63, 75, 226, 230, 901
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	3 cut(s)	78, 816, 1153
StyI	CCWWGG	3 cut(s)	294, 341, 1005
TaaI	ACNGT	2 cut(s)	541, 791
TaiI	ACGT	4 cut(s)	130, 198, 423, 666
TaqI	TCGA	1 cut(s)	675
TasI	AATT	3 cut(s)	448, 1142, 1159
TatI	WGTACW	3 cut(s)	805, 1041, 1137
TauI	GCSGC	4 cut(s)	66, 78, 229, 232
TfiI	GAWTC	4 cut(s)	83, 239, 443, 552
Tru1I	TTAA	2 cut(s)	527, 924
Tru9I	TTAA	2 cut(s)	527, 924
TscAI	CASTG	2 cut(s)	609, 916
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	3 cut(s)	305, 907, 944
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	2 cut(s)	609, 916
Van91I	CCANNNNNTGG	1 cut(s)	399
VpaK11BI	GGWCC	2 cut(s)	607, 1073
XapI	RAATTY	2 cut(s)	448, 1142
XceI	RCATGY	1 cut(s)	106
XmaJI	CCTAGG	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	987
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.