Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000475.1

Orthogroup ID

OG0004922

Physical Location & Seq

Genomic Coordinates Forward (+)

389 .. 1806

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000475.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgtggtggatgatgggtgaaggaggaggtccttactgctctaagaagactgacgattactgcgctgatgtttgtggccaggaatcaggtagactattaagcatgtcaagagtccgctgcattctccgtggatttgatataagagctctcatccttctcattatgcttattccgacatgcatctttggcatatatgcgcatggacagaagatctcatacttcttgcggccactatgggaatcaccacccaaacctttccatgatatcccacactactatcacgagaatgtgtcaatggagaacctctgcaaacttcacggttggggcatccgcgagtaccctaggcgtgtctatgatgctgtgttgttcagtaatgagatggacatccttacaatacgatggaaagaattgtatccctacataacgaaatttgttctcctggagtcaaattcaacattttctggaattttcaagcctctgcattttgcaaagaatcgggagcagttcgattttgttgaaccccggttggaatatgcgacagttggaagaacagccaagaaaggggacaacccatttgttgaggaggcatatcagcggctacaattggacaaccttctcaaactagctggtatcactgacgacgacttgttgataatgtcggatgttgatgagatcccaagcagacacactatcaatctcctgaggtggtgtgatgatattcctgacgtccttcatcttcggctgaagaactatctttattcctttgagtttcttgtggacaataacagttggagggcctcagtacacaggtatcgagagaatgtgaccaaatatgcacattttcgccagacagatgacgtcctggcagatgcagggtggcattgcagcttttgttttcgcaaaatcagtgagttcatatttaagatgaaggcatacagtcacaatgatcgtatcagatttaataagtatctcaaccctaaaagagttcaggaagtaatctgcaacggagacgatctgtttgatatgcttccagaagagtacacattcaaggaaatcatcggcaaaatgggccctattcctcattcctactcagctgttcatctcccatcctatctgttggagaatgcagagaagtataaattcttgttgcctggcaattgcagaagagatagggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0003830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0008375 GO:0012505 GO:0016020 GO:0016021 GO:0016740 GO:0016757 GO:0016758 GO:0031090 GO:0031224 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791 GO:0140096 GO:0140103

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

392

Amino Acids

46.3

Weight (kDa)

6.92

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12990 AT1G67880
fragaria_vesca	FvH4_4g25670 FvH4_4g25670 FvH4_7g20170
malus_domestica	MD13G1100100.v1.1 MD16G1101100.v1.1
prunus_persica	Prupe.1G245800_v2.0.a1
pyrus_communis	pycom13g08780 pycom16g08550
rosa_chinensis	RchiOBHm_Chr1g0364131 RchiOBHm_Chr4g0433111
rosa_laevigata	RLG00000006785 RLG00000027513
rosa_multiflora	Rmu_sc0000071.1_g000017 Rmu_ssc0000475.1_g000002
rosa_roxburghii	Rroxscaffold_4G00292610 Rroxscaffold_5G00374580
rosa_rugosa	Rorug01G0313800 Rorug04G0265400
rosa_samantha	Rh1AG321300 Rh1BG284500 Rh1CG300900 Rh1DG315900 Rh4AG319500 Rh4BG327700 Rh4CG343100 Rh4DG322900
rosa_wichuraiana	Rw1G028490 Rw4G027760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	729, 861
Acc16I	TGCGCA	1 cut(s)	198
AccI	GTMKAC	1 cut(s)	91
AccII	CGCG	1 cut(s)	333
AciI	CCGC	4 cut(s)	115, 226, 331, 595
AclWI	GGATC	1 cut(s)	667
AcoI	YGGCCR	2 cut(s)	76, 227
AcsI	RAATTY	4 cut(s)	428, 448, 465, 1139
AcuI	CTGAAG	1 cut(s)	764
AcyI	GRCGYC	2 cut(s)	726, 858
AfaI	GTAC	3 cut(s)	338, 804, 1040
AfiI	CCNNNNNNNGG	1 cut(s)	561
AgsI	TTSAA	4 cut(s)	453, 472, 518, 1048
AjnI	CCWGG	4 cut(s)	78, 438, 861, 1150
AluBI	AGCT	4 cut(s)	146, 626, 888, 1094
AluI	AGCT	4 cut(s)	146, 626, 888, 1094
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	1002
AlwI	GGATC	1 cut(s)	667
AoxI	GGCC	4 cut(s)	76, 227, 795, 1069
ApaI	GGGCCC	1 cut(s)	1073
ApeKI	GCWGC	2 cut(s)	117, 885
ApoI	RAATTY	4 cut(s)	428, 448, 465, 1139
ArsI	GACNNNNNNTTYG	4 cut(s)	557, 589, 1001, 1033
AspA2I	CCTAGG	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	65, 199
AspS9I	GGNCC	4 cut(s)	29, 795, 1069, 1070
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	2 cut(s)	29, 234
AvaII	GGWCC	1 cut(s)	29
AvrII	CCTAGG	1 cut(s)	341
AxyI	CCTNAGG	1 cut(s)	701
BaeGI	GKGCMC	1 cut(s)	1073
BaeI	ACNNNNGTAYC	2 cut(s)	794, 827
BalI	TGGCCA	1 cut(s)	78
BanII	GRGCYC	2 cut(s)	148, 1073
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	104, 897
BccI	CCATC	4 cut(s)	7, 373, 393, 1114
BciT130I	CCWGG	4 cut(s)	80, 440, 863, 1152
BciVI	GTATCC	1 cut(s)	423
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	1002
BfaI	CTAG	2 cut(s)	342, 623
BfuI	GTATCC	1 cut(s)	423
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	4 cut(s)	118, 227, 596, 886
BlnI	CCTAGG	1 cut(s)	341
BlsI	GCNGC	4 cut(s)	119, 228, 597, 887
Bme1390I	CCNGG	5 cut(s)	80, 440, 523, 863, 1152
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	4 cut(s)	29, 795, 1069, 1070
BmiI	GGNNCC	1 cut(s)	1071
BmrFI	CCNGG	5 cut(s)	80, 440, 523, 863, 1152
BmsI	GCATC	4 cut(s)	189, 336, 346, 859
BpiI	GAAGAC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	383
BsaHI	GRCGYC	2 cut(s)	726, 858
BsaJI	CCNNGG	3 cut(s)	127, 341, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse21I	CCTNAGG	1 cut(s)	701
Bse3DI	GCAATG	1 cut(s)	880
Bse8I	GATNNNNATC	1 cut(s)	383
BseBI	CCWGG	4 cut(s)	80, 440, 863, 1152
BseDI	CCNNGG	3 cut(s)	127, 341, 521
BseGI	GGATG	6 cut(s)	15, 150, 327, 384, 667, 1106
BseJI	GATNNNNATC	1 cut(s)	383
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMI	GCAATG	1 cut(s)	880
BseMII	CTCAG	3 cut(s)	692, 813, 1104
BseRI	GAGGAG	2 cut(s)	39, 596
BseSI	GKGCMC	1 cut(s)	1073
BseXI	GCAGC	2 cut(s)	104, 897
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	4 cut(s)	78, 229, 797, 1071
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	523
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	1 cut(s)	1002
BsmBI	CGTCTC	1 cut(s)	1002
BsmFI	GGGAC	1 cut(s)	578
BsmI	GAATGC	2 cut(s)	120, 1129
BsnI	GGCC	4 cut(s)	78, 229, 797, 1071
Bsp120I	GGGCCC	1 cut(s)	1069
Bsp1286I	GDGCHC	2 cut(s)	148, 1073
Bsp143I	GATC	4 cut(s)	210, 672, 946, 1012
BspACI	CCGC	4 cut(s)	115, 226, 331, 595
BspANI	GGCC	4 cut(s)	78, 229, 797, 1071
BspCNI	CTCAG	3 cut(s)	693, 812, 1103
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	1071
BspPI	GGATC	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	880
BssECI	CCNNGG	3 cut(s)	127, 341, 521
BssMI	GATC	4 cut(s)	210, 672, 946, 1012
BssNI	GRCGYC	2 cut(s)	726, 858
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	341
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	4 cut(s)	80, 440, 863, 1152
Bst4CI	ACNGT	4 cut(s)	320, 541, 788, 938
Bst6I	CTCTTC	2 cut(s)	1029, 1159
BstACI	GRCGYC	2 cut(s)	726, 858
BstDEI	CTNAG	4 cut(s)	42, 701, 799, 1090
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	6 cut(s)	15, 150, 327, 384, 667, 1106
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	65, 199
BstKTI	GATC	4 cut(s)	213, 675, 949, 1015
BstMAI	GTCTC	1 cut(s)	1002
BstMBI	GATC	4 cut(s)	210, 672, 946, 1012
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 1068
BstNI	CCWGG	4 cut(s)	80, 440, 863, 1152
BstNSI	RCATGY	2 cut(s)	106, 180
BstSCI	CCNGG	5 cut(s)	78, 438, 521, 861, 1150
BstSLI	GKGCMC	1 cut(s)	1073
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	104, 897
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	2 cut(s)	210, 672
BstYI	RGATCY	2 cut(s)	210, 672
Bsu36I	CCTNAGG	1 cut(s)	701
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	4 cut(s)	78, 229, 797, 1071
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	6 cut(s)	15, 150, 327, 384, 667, 1106
BtsIMutI	CAGTG	2 cut(s)	633, 913
CfoI	GCGC	2 cut(s)	65, 199
Cfr13I	GGNCC	4 cut(s)	29, 795, 1069, 1070
Csp6I	GTAC	3 cut(s)	337, 803, 1039
CviAII	CATG	4 cut(s)	103, 177, 200, 260
CviQI	GTAC	3 cut(s)	337, 803, 1039
DdeI	CTNAG	4 cut(s)	42, 701, 799, 1090
DpnI	GATC	4 cut(s)	212, 674, 948, 1014
DpnII	GATC	4 cut(s)	210, 672, 946, 1012
EaeI	YGGCCR	2 cut(s)	76, 227
Eam1104I	CTCTTC	2 cut(s)	1029, 1159
EarI	CTCTTC	2 cut(s)	1029, 1159
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	341
Eco24I	GRGCYC	2 cut(s)	148, 1073
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	764
Eco81I	CCTNAGG	1 cut(s)	701
EcoICRI	GAGCTC	1 cut(s)	146
EcoO109I	RGGNCCY	3 cut(s)	29, 795, 1070
EcoRII	CCWGG	4 cut(s)	78, 438, 861, 1150
EcoRV	GATATC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	341
EcoT22I	ATGCAT	1 cut(s)	182
EcoT38I	GRGCYC	2 cut(s)	148, 1073
ErhI	CCWWGG	1 cut(s)	341
Esp3I	CGTCTC	1 cut(s)	1002
FaeI	CATG	4 cut(s)	106, 180, 203, 263
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	4 cut(s)	102, 176, 199, 259
FblI	GTMKAC	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	118, 227, 596, 886
FokI	GGATG	6 cut(s)	22, 137, 314, 371, 674, 1093
FriOI	GRGCYC	2 cut(s)	148, 1073
Fsp4HI	GCNGC	4 cut(s)	118, 227, 596, 886
FspAI	RTGCGCAY	1 cut(s)	198
FspBI	CTAG	2 cut(s)	342, 623
FspI	TGCGCA	1 cut(s)	198
GlaI	GCGC	2 cut(s)	64, 198
GluI	GCNGC	4 cut(s)	118, 227, 596, 886
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	4 cut(s)	78, 229, 797, 1071
HapII	CCGG	1 cut(s)	523
HhaI	GCGC	2 cut(s)	65, 199
Hin1I	GRCGYC	2 cut(s)	726, 858
Hin1II	CATG	4 cut(s)	106, 180, 203, 263
Hin6I	GCGC	2 cut(s)	63, 197
HinP1I	GCGC	2 cut(s)	63, 197
HinfI	GANTC	5 cut(s)	83, 111, 239, 443, 493
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	2 cut(s)	29, 234
Hpy166II	GTNNAC	4 cut(s)	92, 778, 805, 1041
Hpy188I	TCNGA	3 cut(s)	174, 661, 956
Hpy188III	TCNNGA	9 cut(s)	108, 281, 462, 497, 700, 722, 815, 989, 1031
Hpy8I	GTNNAC	4 cut(s)	92, 778, 805, 1041
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	5 cut(s)	14, 164, 623, 740, 922
HpyCH4III	ACNGT	4 cut(s)	320, 541, 788, 938
HpyCH4IV	ACGT	2 cut(s)	726, 858
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 1068
HpyF3I	CTNAG	4 cut(s)	42, 701, 799, 1090
HpySE526I	ACGT	2 cut(s)	726, 858
Hsp92I	GRCGYC	2 cut(s)	726, 858
Hsp92II	CATG	4 cut(s)	106, 180, 203, 263
HspAI	GCGC	2 cut(s)	63, 197
Kzo9I	GATC	4 cut(s)	210, 672, 946, 1012
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	2 cut(s)	104, 897
LweI	GCATC	4 cut(s)	189, 336, 346, 859
MaeI	CTAG	2 cut(s)	342, 623
MaeII	ACGT	2 cut(s)	726, 858
MaeIII	GTNAC	2 cut(s)	823, 938
MalI	GATC	4 cut(s)	212, 674, 948, 1014
MboI	GATC	4 cut(s)	210, 672, 946, 1012
MboII	GAAGA	7 cut(s)	58, 220, 558, 728, 757, 1046, 1176
MfeI	CAATTG	2 cut(s)	602, 1156
MflI	RGATCY	2 cut(s)	210, 672
MhlI	GDGCHC	2 cut(s)	148, 1073
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	7 cut(s)	407, 428, 448, 465, 602, 1139, 1156
MluNI	TGGCCA	1 cut(s)	78
MlyI	GAGTC	2 cut(s)	120, 452
MmeI	TCCRAC	6 cut(s)	197, 507, 523, 639, 770, 1098
Mox20I	TGGCCA	1 cut(s)	78
Mph1103I	ATGCAT	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	3 cut(s)	98, 921, 960
MslI	CAYNNNNRTG	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	78
MspA1I	CMGCKG	3 cut(s)	117, 595, 1094
MspI	CCGG	1 cut(s)	523
MspR9I	CCNGG	5 cut(s)	80, 440, 523, 863, 1152
MunI	CAATTG	2 cut(s)	602, 1156
Mva1269I	GAATGC	2 cut(s)	120, 1129
MvaI	CCWGG	4 cut(s)	80, 440, 863, 1152
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	186, 1068
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	4 cut(s)	210, 672, 946, 1012
NlaIII	CATG	4 cut(s)	106, 180, 203, 263
NlaIV	GGNNCC	1 cut(s)	1071
NmuCI	GTSAC	2 cut(s)	823, 938
NsbI	TGCGCA	1 cut(s)	198
NsiI	ATGCAT	1 cut(s)	182
NspI	RCATGY	2 cut(s)	106, 180
PctI	GAATGC	2 cut(s)	120, 1129
PfeI	GAWTC	3 cut(s)	83, 239, 493
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	119, 228, 597, 887
PleI	GAGTC	2 cut(s)	119, 451
PpsI	GAGTC	2 cut(s)	119, 451
PpuMI	RGGWCCY	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	29
Psp6I	CCWGG	4 cut(s)	78, 438, 861, 1150
PspGI	CCWGG	4 cut(s)	78, 438, 861, 1150
PspN4I	GGNNCC	1 cut(s)	1071
PspOMI	GGGCCC	1 cut(s)	1069
PspPI	GGNCC	4 cut(s)	29, 795, 1069, 1070
PspPPI	RGGWCCY	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	210, 672
PvuII	CAGCTG	1 cut(s)	1094
RsaI	GTAC	3 cut(s)	338, 804, 1040
RsaNI	GTAC	3 cut(s)	337, 803, 1039
RseI	CAYNNNNRTG	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	3 cut(s)	98, 921, 960
SatI	GCNGC	4 cut(s)	118, 227, 596, 886
Sau3AI	GATC	4 cut(s)	210, 672, 946, 1012
Sau96I	GGNCC	4 cut(s)	29, 795, 1069, 1070
SchI	GAGTC	2 cut(s)	120, 452
ScrFI	CCNGG	5 cut(s)	80, 440, 523, 863, 1152
SduI	GDGCHC	2 cut(s)	148, 1073
SfaNI	GCATC	4 cut(s)	189, 336, 346, 859
SinI	GGWCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	7 cut(s)	407, 428, 448, 465, 602, 1139, 1156
SsiI	CCGC	4 cut(s)	115, 226, 331, 595
SspMI	CTAG	2 cut(s)	342, 623
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	5 cut(s)	78, 438, 521, 861, 1150
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	4 cut(s)	320, 541, 788, 938
TaiI	ACGT	2 cut(s)	729, 861
TaqI	TCGA	2 cut(s)	507, 814
TasI	AATT	7 cut(s)	407, 428, 448, 465, 602, 1139, 1156
TatI	WGTACW	2 cut(s)	802, 1038
TauI	GCSGC	2 cut(s)	229, 598
TfiI	GAWTC	3 cut(s)	83, 239, 493
Tru1I	TTAA	3 cut(s)	98, 921, 960
Tru9I	TTAA	3 cut(s)	98, 921, 960
TscAI	CASTG	2 cut(s)	640, 913
TseFI	GTSAC	2 cut(s)	823, 938
TseI	GCWGC	2 cut(s)	117, 885
Tsp45I	GTSAC	2 cut(s)	823, 938
TspDTI	ATGAA	4 cut(s)	722, 904, 941, 1088
TspGWI	ACGGA	2 cut(s)	116, 1020
TspRI	CASTG	2 cut(s)	640, 913
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	4 cut(s)	428, 448, 465, 1139
XceI	RCATGY	2 cut(s)	106, 180
XmaJI	CCTAGG	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	91
XspI	CTAG	2 cut(s)	342, 623
ZraI	GACGTC	2 cut(s)	727, 859
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.