MD13G1100100.v1.1

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0004922
Physical Location & Seq
Reverse (-)
7074421 .. 7077390
2970 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1100100.v1.1.491

Sequence Viewer

Length: 1179 bp
ATGTGGTGGATGATGGGCGAGGGAGGAGGCCAGTACTGCTCCAAGAAGACTGATGATATCTGCGACAATGTTTGCGGCCAGGAATCAGGCAGAATGTTGAGCATGGCAAGAGTTCGCTGCATTCTACGTGGAGTTGACTTCAAAGTTCTCCTCATTCTGTTTACACTTATTCCGTTGTGTATCTTTGGCATTTACGTGCATGGACAGAAGATCTCATACTTCTTGCGGCCGCTATGGGAATCACCACCCAAACCTTTCCATGATATTCCACACTACTATCACGAGAATGTGTCCATGGAGAACCTCTGCAAGCTTCATGGTTGGGGGATCCGTGAGTACCCTAGGCGTGTCTTTGATGCTGTGTTGTTCAGTAATGAGATGGACATCCTTACCATAAGATGGAAAGAATTGTACCCCTACATAACACAGTTTGTTCTCCTTGAGTCAAATTCAACATTTACTGGATTTCCAAAGCCTCTGTTCTTCTCCCGTTATCGCGAGCAGTTCAAGTTTGTGGAGCCCCGGTTAACTTATGGGACTTTTGGAGGAAGATTCAAGAGAGGGGAAAATCCATTTGTTGAGGAGGCATATCAACGGGTAGCACTGGACCAGCTTCTCAAAATAGCTGGTATTACTGAGGACGACTTGTTGATAATGTCTGACGTCGATGAGATCCCAAGCAGACACACCATCAATCTTCTCAGGTGGTGTGATGAAGTTCCTCAAATCTTACATCTTCAGTTGAAGAACTATCTCTATTCCTTTGAATTTCTGGTGGACAATAACAGTTGGAGAGCTTCAGTACACAGGTATCGGGAAGGGGTGACAAAGTATGCGCACTATCGCCAGACGGATGACATCTTAGCAGATGCAGGGTGGCATTGTAGCTTTTGTTTCCGCTATATCACTGAGTTCATCTTCAAGATGAAAGCATACAGCCATTATGATAGAGTCAGGTTTTCAAAGTATCTAAACCCAACAAGAGTTCAGAAAGTGATCTGCAAGGGGTCTGATTTATTTGATATGCTTCCCGAAGAGTACACCTTCAAGGAAATCATCGGGAAAATGGGACCTATTCCTCATTCCTTCTCTGGTGTCCATCTTCCTTCCTTTCTGTTGGAGAATGCAGAGAAGTATAAATTTCTCTTGCCTGGGAATTGCAGAAGAGAGAGTGAGTGA

Protein Analysis

393

Amino Acids

46.38

Weight (kDa)

7.94

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 44 - 390 7.8e-186 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 666
Acc16I TGCGCA 1 cut(s) 837
AccB7I CCANNNNNTGG 1 cut(s) 399
AccII CGCG 1 cut(s) 498
AciI CCGC 4 cut(s) 75, 226, 230, 898
AclWI GGATC 3 cut(s) 322, 335, 667
AcoI YGGCCR 2 cut(s) 76, 227
AcsI RAATTY 3 cut(s) 448, 767, 1139
AcuI CTGAAG 2 cut(s) 722, 783
AcyI GRCGYC 1 cut(s) 663
AfaI GTAC 5 cut(s) 35, 338, 413, 804, 1040
AfiI CCNNNNNNNGG 1 cut(s) 399
AgsI TTSAA 9 cut(s) 142, 453, 508, 556, 745, 767, 922, 963, 1048
AjnI CCWGG 2 cut(s) 78, 1150
AluBI AGCT 5 cut(s) 313, 613, 626, 797, 888
AluI AGCT 5 cut(s) 313, 613, 626, 797, 888
AlwI GGATC 3 cut(s) 322, 335, 667
AoxI GGCC 3 cut(s) 28, 76, 227
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 3 cut(s) 448, 767, 1139
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 1 cut(s) 838
AspS9I GGNCC 2 cut(s) 607, 1070
AsuC2I CCSGG 1 cut(s) 523
AsuHPI GGTGA 2 cut(s) 234, 835
AvaII GGWCC 2 cut(s) 607, 1070
AvrII CCTAGG 1 cut(s) 341
BaeI ACNNNNGTAYC 2 cut(s) 794, 827
BamHI GGATCC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BauI CACGAG 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 104
BccI CCATC 5 cut(s) 7, 373, 393, 698, 1107
BciT130I CCWGG 2 cut(s) 80, 1152
BcnI CCSGG 1 cut(s) 523
BfaI CTAG 1 cut(s) 342
BglII AGATCT 1 cut(s) 210
BisI GCNGC 4 cut(s) 76, 118, 227, 230
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 4 cut(s) 77, 119, 228, 231
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 3 cut(s) 80, 523, 1152
Bme18I GGWCC 2 cut(s) 607, 1070
BmgT120I GGNCC 2 cut(s) 607, 1070
BmiI GGNNCC 3 cut(s) 329, 519, 1071
BmrFI CCNGG 3 cut(s) 80, 523, 1152
BmsI GCATC 2 cut(s) 346, 859
BpiI GAAGAC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 523
BsaAI YACGTR 2 cut(s) 128, 196
BsaBI GATNNNNATC 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 663
BsaJI CCNNGG 4 cut(s) 294, 341, 521, 1151
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 3 cut(s) 31, 466, 609
Bse8I GATNNNNATC 1 cut(s) 383
BseBI CCWGG 2 cut(s) 80, 1152
BseDI CCNNGG 4 cut(s) 294, 341, 521, 1151
BseGI GGATG 3 cut(s) 15, 384, 859
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMII CTCAG 3 cut(s) 627, 715, 900
BseNI ACTGG 3 cut(s) 31, 466, 609
BseRI GAGGAG 3 cut(s) 39, 140, 596
BseX3I CGGCCG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 230
BshFI GGCC 3 cut(s) 30, 78, 229
BsiEI CGRYCG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 523
BslFI GGGAC 2 cut(s) 550, 1083
BslI CCNNNNNNNGG 1 cut(s) 399
BsmFI GGGAC 2 cut(s) 550, 1083
BsmI GAATGC 2 cut(s) 120, 1129
BsnI GGCC 3 cut(s) 30, 78, 229
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 4 cut(s) 210, 327, 672, 996
Bsp19I CCATGG 1 cut(s) 294
Bsp68I TCGCGA 1 cut(s) 498
BspACI CCGC 4 cut(s) 75, 226, 230, 898
BspANI GGCC 3 cut(s) 30, 78, 229
BspCNI CTCAG 3 cut(s) 628, 714, 901
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 329, 519, 1071
BspPI GGATC 3 cut(s) 322, 335, 667
BsrI ACTGG 3 cut(s) 31, 466, 609
BssECI CCNNGG 4 cut(s) 294, 341, 521, 1151
BssMI GATC 4 cut(s) 210, 327, 672, 996
BssNI GRCGYC 1 cut(s) 663
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 294, 341
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 80, 1152
Bst4CI ACNGT 2 cut(s) 429, 788
Bst6I CTCTTC 2 cut(s) 1029, 1159
BstACI GRCGYC 1 cut(s) 663
BstBAI YACGTR 2 cut(s) 128, 196
BstC8I GCNNGC 2 cut(s) 311, 500
BstDEI CTNAG 4 cut(s) 636, 701, 862, 909
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 3 cut(s) 15, 384, 859
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 1 cut(s) 838
BstKTI GATC 4 cut(s) 213, 330, 675, 999
BstMBI GATC 4 cut(s) 210, 327, 672, 996
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 2 cut(s) 80, 1152
BstSCI CCNGG 3 cut(s) 78, 521, 1150
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 3 cut(s) 210, 327, 672
BstYI RGATCY 3 cut(s) 210, 327, 672
BstZI CGGCCG 1 cut(s) 227
BsuRI GGCC 3 cut(s) 30, 78, 229
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 15, 384, 859
BtsIMutI CAGTG 2 cut(s) 602, 906
BtuMI TCGCGA 1 cut(s) 498
Cac8I GCNNGC 2 cut(s) 311, 500
CciNI GCGGCCGC 1 cut(s) 227
CfoI GCGC 1 cut(s) 838
Cfr13I GGNCC 2 cut(s) 607, 1070
Csp6I GTAC 5 cut(s) 34, 337, 412, 803, 1039
CviAII CATG 5 cut(s) 103, 200, 260, 295, 317
CviQI GTAC 5 cut(s) 34, 337, 412, 803, 1039
DdeI CTNAG 4 cut(s) 636, 701, 862, 909
DpnI GATC 4 cut(s) 212, 329, 674, 998
DpnII GATC 4 cut(s) 210, 327, 672, 996
EaeI YGGCCR 2 cut(s) 76, 227
EagI CGGCCG 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 1029, 1159
EarI CTCTTC 2 cut(s) 1029, 1159
EclXI CGGCCG 1 cut(s) 227
Eco130I CCWWGG 2 cut(s) 294, 341
Eco24I GRGCYC 1 cut(s) 522
Eco32I GATATC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 607, 1070
Eco52I CGGCCG 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 722, 783
EcoO109I RGGNCCY 1 cut(s) 1070
EcoRII CCWGG 2 cut(s) 78, 1150
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 2 cut(s) 294, 341
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 294, 341
FaeI CATG 5 cut(s) 106, 203, 263, 298, 320
FaqI GGGAC 2 cut(s) 550, 1083
FatI CATG 5 cut(s) 102, 199, 259, 294, 316
Fnu4HI GCNGC 4 cut(s) 76, 118, 227, 230
FokI GGATG 3 cut(s) 22, 371, 866
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 4 cut(s) 76, 118, 227, 230
FspAI RTGCGCAY 1 cut(s) 837
FspBI CTAG 1 cut(s) 342
FspI TGCGCA 1 cut(s) 837
GlaI GCGC 1 cut(s) 837
GluI GCNGC 4 cut(s) 76, 118, 227, 230
HaeIII GGCC 3 cut(s) 30, 78, 229
HapII CCGG 1 cut(s) 523
HhaI GCGC 1 cut(s) 838
Hin1I GRCGYC 1 cut(s) 663
Hin1II CATG 5 cut(s) 106, 203, 263, 298, 320
Hin6I GCGC 1 cut(s) 836
HinP1I GCGC 1 cut(s) 836
HincII GTYRAC 2 cut(s) 136, 528
HindII GTYRAC 2 cut(s) 136, 528
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 5 cut(s) 83, 239, 443, 552, 951
HpaI GTTAAC 1 cut(s) 528
HpaII CCGG 1 cut(s) 523
HphI GGTGA 2 cut(s) 234, 835
Hpy166II GTNNAC 6 cut(s) 136, 162, 528, 778, 805, 1041
Hpy188I TCNGA 3 cut(s) 661, 990, 1012
Hpy188III TCNNGA 7 cut(s) 281, 497, 556, 815, 922, 1031, 1060
Hpy8I GTNNAC 6 cut(s) 136, 162, 528, 778, 805, 1041
Hpy99I CGWCG 1 cut(s) 668
HpyAV CCTTC 4 cut(s) 812, 1054, 1096, 1116
HpyCH4III ACNGT 2 cut(s) 429, 788
HpyCH4IV ACGT 3 cut(s) 127, 195, 663
HpyCH4V TGCA 7 cut(s) 120, 199, 309, 872, 1002, 1127, 1161
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 4 cut(s) 636, 701, 862, 909
HpySE526I ACGT 3 cut(s) 127, 195, 663
Hsp92I GRCGYC 1 cut(s) 663
Hsp92II CATG 5 cut(s) 106, 203, 263, 298, 320
HspAI GCGC 1 cut(s) 836
KspAI GTTAAC 1 cut(s) 528
Kzo9I GATC 4 cut(s) 210, 327, 672, 996
LmnI GCTCC 2 cut(s) 44, 517
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 2 cut(s) 346, 859
MaeI CTAG 1 cut(s) 342
MaeII ACGT 3 cut(s) 127, 195, 663
MaeIII GTNAC 1 cut(s) 823
MalI GATC 4 cut(s) 212, 329, 674, 998
MboI GATC 4 cut(s) 210, 327, 672, 996
MflI RGATCY 3 cut(s) 210, 327, 672
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 5 cut(s) 407, 448, 767, 1139, 1156
MlyI GAGTC 2 cut(s) 452, 960
MmeI TCCRAC 2 cut(s) 770, 1098
MseI TTAA 1 cut(s) 527
MslI CAYNNNNRTG 2 cut(s) 194, 285
MspI CCGG 1 cut(s) 523
MspR9I CCNGG 3 cut(s) 80, 523, 1152
Mva1269I GAATGC 2 cut(s) 120, 1129
MvaI CCWGG 2 cut(s) 80, 1152
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 1 cut(s) 36
NciI CCSGG 1 cut(s) 523
NcoI CCATGG 1 cut(s) 294
NdeII GATC 4 cut(s) 210, 327, 672, 996
NlaIII CATG 5 cut(s) 106, 203, 263, 298, 320
NlaIV GGNNCC 3 cut(s) 329, 519, 1071
NmuCI GTSAC 1 cut(s) 823
NotI GCGGCCGC 1 cut(s) 227
NruI TCGCGA 1 cut(s) 498
NsbI TGCGCA 1 cut(s) 837
PctI GAATGC 2 cut(s) 120, 1129
PfeI GAWTC 3 cut(s) 83, 239, 552
PflMI CCANNNNNTGG 1 cut(s) 399
PkrI GCNGC 4 cut(s) 77, 119, 228, 231
PleI GAGTC 2 cut(s) 451, 959
PpsI GAGTC 2 cut(s) 451, 959
Ppu21I YACGTR 2 cut(s) 128, 196
PpuMI RGGWCCY 1 cut(s) 1070
Psp5II RGGWCCY 1 cut(s) 1070
Psp6I CCWGG 2 cut(s) 78, 1150
PspGI CCWGG 2 cut(s) 78, 1150
PspN4I GGNNCC 3 cut(s) 329, 519, 1071
PspPI GGNCC 2 cut(s) 607, 1070
PspPPI RGGWCCY 1 cut(s) 1070
PsuI RGATCY 3 cut(s) 210, 327, 672
RruI TCGCGA 1 cut(s) 498
RsaI GTAC 5 cut(s) 35, 338, 413, 804, 1040
RsaNI GTAC 5 cut(s) 34, 337, 412, 803, 1039
RseI CAYNNNNRTG 2 cut(s) 194, 285
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 4 cut(s) 76, 118, 227, 230
Sau3AI GATC 4 cut(s) 210, 327, 672, 996
Sau96I GGNCC 2 cut(s) 607, 1070
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 2 cut(s) 452, 960
ScrFI CCNGG 3 cut(s) 80, 523, 1152
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 2 cut(s) 346, 859
SinI GGWCC 2 cut(s) 607, 1070
SmiMI CAYNNNNRTG 2 cut(s) 194, 285
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 5 cut(s) 407, 448, 767, 1139, 1156
SsiI CCGC 4 cut(s) 75, 226, 230, 898
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 78, 521, 1150
StyI CCWWGG 2 cut(s) 294, 341
TaaI ACNGT 2 cut(s) 429, 788
TaiI ACGT 3 cut(s) 130, 198, 666
TaqI TCGA 1 cut(s) 666
TasI AATT 5 cut(s) 407, 448, 767, 1139, 1156
TatI WGTACW 3 cut(s) 33, 802, 1038
TauI GCSGC 3 cut(s) 78, 229, 232
TfiI GAWTC 3 cut(s) 83, 239, 552
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TscAI CASTG 2 cut(s) 609, 913
TseFI GTSAC 1 cut(s) 823
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 823
TspDTI ATGAA 4 cut(s) 305, 729, 904, 941
TspGWI ACGGA 3 cut(s) 162, 320, 866
TspRI CASTG 2 cut(s) 609, 913
Van91I CCANNNNNTGG 1 cut(s) 399
VpaK11BI GGWCC 2 cut(s) 607, 1070
XapI RAATTY 3 cut(s) 448, 767, 1139
XmaJI CCTAGG 1 cut(s) 341
XspI CTAG 1 cut(s) 342
ZraI GACGTC 1 cut(s) 664
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.