MD16G1101100.v1.1

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0004922
Physical Location & Seq
Reverse (-)
6986473 .. 6989400
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1101100.v1.1.491

Sequence Viewer

Length: 1179 bp
ATGTGGTGGATGATGGCTGAGGGAGGGGGCCATTACTGCTCTAAGAAGACTGATGATATCTGCGGCAATGTTTGCGGCCAGGAATCAGGCAGAATGTTGAGCATGTCAAGAGTTCGCTGCATTCTACGTGGATTTGACTTCAAAGTTCTCCTCATTCTGTTTACACTTGTTCCGATGTGTGTCTTTGGCATTTACGTGCATGGACAGAAGATCTCATACTTCTTGCGGCCGCTATGGGAATCGCCACCTAAACCTTTCCATGATATTCCACACTATTATCACGAGAATGTGTCCATGGAGAACCTCTGCAAACTTCATGGTTGGGGGATCCGTGAGTACCCTAGGCGTGTTTTTGATGCTGTGTTGTTCAGTAATGAGATGGACATCCTTACCATAAGATGGAAAGAGTTGTATCCCTACATAACGCAGTTTGTTCTCCTTGAATCAAATTCAACATTTACTGGATTTCCAAAGCCTCTGTTCTTCTCCCGTTATCGCGAGCAGTTCAAGTTTGTGGAGCCCCGATTAACTTATGGGACTGTTGGAGGAAGATTCAAGAGAGGGGAAAATCCATTTGTTGAGGAGGCATATCAACGAGTAGCACTGGACCAGCTTCTCAAAATAGCTGGTATTACTGAGGACGACTTGTTGATAATGTCTGACGTTGATGAGATCCCAAGCAGACACACCATCAATCTTCTGAGGTGGTGTGACGAAGTTCCTCAGATCTTGCATCTTCAGTTGAAGAACTATCTCTATTCCTTTGAGTTTCTGGTGGACAATAACAGTTGGAGAGCTTCAGTACACAGGTACCGGGAAGGGGAGACGAGATATGCACACTATCGCCAGACAGATGACATCTTAGCAGATGCAGGGTGGCATTGTAGCTTTTGTTTCCGCTATATCAGTGAGTTCATCTTTAAGATGAAAGCATACAGCCATTACGATAGAGTCAGGTTTTCAAAGTATCTAAACCCAGAAAGAGTTCAGAAAGTGATCTGCAAGGGGTCTGATTTATTTGATATGCTTCCCGAAGAGTACACCTTCAAGGAAATCATTGGGAAAATGGGACCTATTCCTCATTCCTTCTCTGGTGTCCATCTTCCATCCTTTCTGTTGGAGAATGCAGAGAAGTACAAATTTCTTTTGCCTGGGAATTGCAGAAGAGAGAGTGGCTGA

Protein Analysis

393

Amino Acids

46.35

Weight (kDa)

7.94

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 45 - 390 9.3e-187 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 810
AccB1I GGYRCC 1 cut(s) 810
AccB7I CCANNNNNTGG 1 cut(s) 399
AccII CGCG 1 cut(s) 498
AciI CCGC 5 cut(s) 63, 75, 226, 230, 898
AclWI GGATC 3 cut(s) 322, 335, 667
AcoI YGGCCR 2 cut(s) 76, 227
AcsI RAATTY 2 cut(s) 448, 1139
AcuI CTGAAG 2 cut(s) 722, 783
AfaI GTAC 5 cut(s) 338, 804, 812, 1040, 1136
AfiI CCNNNNNNNGG 2 cut(s) 399, 820
AgsI TTSAA 8 cut(s) 142, 443, 453, 508, 556, 745, 963, 1048
AjnI CCWGG 2 cut(s) 78, 1150
AluBI AGCT 4 cut(s) 613, 626, 797, 888
AluI AGCT 4 cut(s) 613, 626, 797, 888
Alw26I GTCTC 1 cut(s) 818
AlwI GGATC 3 cut(s) 322, 335, 667
AoxI GGCC 3 cut(s) 28, 76, 227
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 2 cut(s) 448, 1139
Asp700I GAANNNNTTC 1 cut(s) 984
Asp718I GGTACC 1 cut(s) 810
AspA2I CCTAGG 1 cut(s) 341
AspS9I GGNCC 3 cut(s) 28, 607, 1070
AsuC2I CCSGG 1 cut(s) 815
AvaII GGWCC 2 cut(s) 607, 1070
AvrII CCTAGG 1 cut(s) 341
BaeI ACNNNNGTAYC 2 cut(s) 794, 827
BamHI GGATCC 1 cut(s) 327
BanI GGYRCC 1 cut(s) 810
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BauI CACGAG 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 53
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 104
BccI CCATC 6 cut(s) 7, 373, 393, 698, 1107, 1114
BciT130I CCWGG 2 cut(s) 80, 1152
BciVI GTATCC 1 cut(s) 423
BcnI CCSGG 1 cut(s) 815
BcoDI GTCTC 1 cut(s) 818
BfaI CTAG 1 cut(s) 342
BfuI GTATCC 1 cut(s) 423
BglII AGATCT 2 cut(s) 210, 726
BisI GCNGC 5 cut(s) 64, 76, 118, 227, 230
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 5 cut(s) 65, 77, 119, 228, 231
Bme1390I CCNGG 3 cut(s) 80, 815, 1152
Bme18I GGWCC 2 cut(s) 607, 1070
BmgT120I GGNCC 3 cut(s) 28, 607, 1070
BmiI GGNNCC 5 cut(s) 29, 329, 519, 812, 1071
BmrFI CCNGG 3 cut(s) 80, 815, 1152
BmsI GCATC 3 cut(s) 346, 742, 859
BpiI GAAGAC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 815
BsaAI YACGTR 2 cut(s) 128, 196
BsaBI GATNNNNATC 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 294, 341, 1151
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 820
Bse1I ACTGG 2 cut(s) 466, 609
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 383
BseBI CCWGG 2 cut(s) 80, 1152
BseDI CCNNGG 3 cut(s) 294, 341, 1151
BseGI GGATG 3 cut(s) 15, 384, 1106
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 2 cut(s) 399, 820
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 4 cut(s) 9, 627, 692, 737
BseNI ACTGG 2 cut(s) 466, 609
BseRI GAGGAG 2 cut(s) 140, 596
BseX3I CGGCCG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 230
BshFI GGCC 3 cut(s) 30, 78, 229
BshNI GGYRCC 1 cut(s) 810
BsiEI CGRYCG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 814
BslFI GGGAC 2 cut(s) 550, 1083
BslI CCNNNNNNNGG 2 cut(s) 399, 820
BsmAI GTCTC 1 cut(s) 818
BsmBI CGTCTC 1 cut(s) 818
BsmFI GGGAC 2 cut(s) 550, 1083
BsmI GAATGC 2 cut(s) 120, 1129
BsnI GGCC 3 cut(s) 30, 78, 229
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 5 cut(s) 210, 327, 672, 726, 996
Bsp19I CCATGG 1 cut(s) 294
Bsp68I TCGCGA 1 cut(s) 498
BspACI CCGC 5 cut(s) 63, 75, 226, 230, 898
BspANI GGCC 3 cut(s) 30, 78, 229
BspCNI CTCAG 4 cut(s) 10, 628, 693, 736
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 5 cut(s) 29, 329, 519, 812, 1071
BspPI GGATC 3 cut(s) 322, 335, 667
BspT107I GGYRCC 1 cut(s) 810
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 2 cut(s) 466, 609
BssECI CCNNGG 3 cut(s) 294, 341, 1151
BssMI GATC 5 cut(s) 210, 327, 672, 726, 996
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 294, 341
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 80, 1152
Bst4CI ACNGT 2 cut(s) 541, 788
Bst6I CTCTTC 2 cut(s) 1029, 1159
BstAPI GCANNNNNTGC 1 cut(s) 72
BstBAI YACGTR 2 cut(s) 128, 196
BstC8I GCNNGC 1 cut(s) 500
BstDEI CTNAG 6 cut(s) 18, 42, 636, 701, 723, 862
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 3 cut(s) 15, 384, 1106
BstFNI CGCG 1 cut(s) 498
BstKTI GATC 5 cut(s) 213, 330, 675, 729, 999
BstMAI GTCTC 1 cut(s) 818
BstMBI GATC 5 cut(s) 210, 327, 672, 726, 996
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 2 cut(s) 36, 72
BstNI CCWGG 2 cut(s) 80, 1152
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 3 cut(s) 78, 813, 1150
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 4 cut(s) 210, 327, 672, 726
BstYI RGATCY 4 cut(s) 210, 327, 672, 726
BstZI CGGCCG 1 cut(s) 227
BsuI GTATCC 1 cut(s) 423
BsuRI GGCC 3 cut(s) 30, 78, 229
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 15, 384, 1106
BtsIMutI CAGTG 2 cut(s) 602, 913
BtuMI TCGCGA 1 cut(s) 498
Cac8I GCNNGC 1 cut(s) 500
CciNI GCGGCCGC 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 28, 607, 1070
Csp6I GTAC 5 cut(s) 337, 803, 811, 1039, 1135
CviAII CATG 5 cut(s) 103, 200, 260, 295, 317
CviQI GTAC 5 cut(s) 337, 803, 811, 1039, 1135
DdeI CTNAG 6 cut(s) 18, 42, 636, 701, 723, 862
DpnI GATC 5 cut(s) 212, 329, 674, 728, 998
DpnII GATC 5 cut(s) 210, 327, 672, 726, 996
EaeI YGGCCR 2 cut(s) 76, 227
EagI CGGCCG 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 1029, 1159
EarI CTCTTC 2 cut(s) 1029, 1159
EclXI CGGCCG 1 cut(s) 227
Eco130I CCWWGG 2 cut(s) 294, 341
Eco24I GRGCYC 1 cut(s) 522
Eco32I GATATC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 607, 1070
Eco52I CGGCCG 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 722, 783
EcoO109I RGGNCCY 1 cut(s) 1070
EcoRII CCWGG 2 cut(s) 78, 1150
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 2 cut(s) 294, 341
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 294, 341
Esp3I CGTCTC 1 cut(s) 818
FaeI CATG 5 cut(s) 106, 203, 263, 298, 320
FaqI GGGAC 2 cut(s) 550, 1083
FatI CATG 5 cut(s) 102, 199, 259, 294, 316
Fnu4HI GCNGC 5 cut(s) 64, 76, 118, 227, 230
FokI GGATG 3 cut(s) 22, 371, 1093
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 5 cut(s) 64, 76, 118, 227, 230
FspBI CTAG 1 cut(s) 342
GluI GCNGC 5 cut(s) 64, 76, 118, 227, 230
HaeIII GGCC 3 cut(s) 30, 78, 229
HapII CCGG 1 cut(s) 814
Hin1II CATG 5 cut(s) 106, 203, 263, 298, 320
HinfI GANTC 5 cut(s) 83, 239, 443, 552, 951
HpaII CCGG 1 cut(s) 814
Hpy166II GTNNAC 4 cut(s) 162, 778, 805, 1041
Hpy188I TCNGA 6 cut(s) 174, 661, 702, 726, 990, 1012
Hpy188III TCNNGA 5 cut(s) 108, 281, 497, 556, 1031
Hpy8I GTNNAC 4 cut(s) 162, 778, 805, 1041
HpyAV CCTTC 3 cut(s) 812, 1054, 1096
HpyCH4III ACNGT 2 cut(s) 541, 788
HpyCH4IV ACGT 3 cut(s) 127, 195, 663
HpyCH4V TGCA 9 cut(s) 120, 199, 309, 733, 836, 872, 1002, 1127, 1161
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 72
HpyF3I CTNAG 6 cut(s) 18, 42, 636, 701, 723, 862
HpySE526I ACGT 3 cut(s) 127, 195, 663
Hsp92II CATG 5 cut(s) 106, 203, 263, 298, 320
KpnI GGTACC 1 cut(s) 814
Kzo9I GATC 5 cut(s) 210, 327, 672, 726, 996
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 3 cut(s) 346, 742, 859
MaeI CTAG 1 cut(s) 342
MaeII ACGT 3 cut(s) 127, 195, 663
MaeIII GTNAC 1 cut(s) 710
MalI GATC 5 cut(s) 212, 329, 674, 728, 998
MboI GATC 5 cut(s) 210, 327, 672, 726, 996
MflI RGATCY 4 cut(s) 210, 327, 672, 726
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 3 cut(s) 448, 1139, 1156
MlyI GAGTC 1 cut(s) 960
MmeI TCCRAC 3 cut(s) 523, 770, 1098
MroXI GAANNNNTTC 1 cut(s) 984
MseI TTAA 2 cut(s) 527, 921
MslI CAYNNNNRTG 2 cut(s) 194, 285
MspI CCGG 1 cut(s) 814
MspR9I CCNGG 3 cut(s) 80, 815, 1152
Mva1269I GAATGC 2 cut(s) 120, 1129
MvaI CCWGG 2 cut(s) 80, 1152
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 2 cut(s) 36, 72
NciI CCSGG 1 cut(s) 815
NcoI CCATGG 1 cut(s) 294
NdeII GATC 5 cut(s) 210, 327, 672, 726, 996
NlaIII CATG 5 cut(s) 106, 203, 263, 298, 320
NlaIV GGNNCC 5 cut(s) 29, 329, 519, 812, 1071
NmuCI GTSAC 1 cut(s) 710
NotI GCGGCCGC 1 cut(s) 227
NruI TCGCGA 1 cut(s) 498
NspI RCATGY 1 cut(s) 106
PctI GAATGC 2 cut(s) 120, 1129
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 4 cut(s) 83, 239, 443, 552
PflMI CCANNNNNTGG 1 cut(s) 399
PkrI GCNGC 5 cut(s) 65, 77, 119, 228, 231
PleI GAGTC 1 cut(s) 959
PpsI GAGTC 1 cut(s) 959
Ppu21I YACGTR 2 cut(s) 128, 196
PpuMI RGGWCCY 1 cut(s) 1070
Psp5II RGGWCCY 1 cut(s) 1070
Psp6I CCWGG 2 cut(s) 78, 1150
PspGI CCWGG 2 cut(s) 78, 1150
PspN4I GGNNCC 5 cut(s) 29, 329, 519, 812, 1071
PspPI GGNCC 3 cut(s) 28, 607, 1070
PspPPI RGGWCCY 1 cut(s) 1070
PsuI RGATCY 4 cut(s) 210, 327, 672, 726
RruI TCGCGA 1 cut(s) 498
RsaI GTAC 5 cut(s) 338, 804, 812, 1040, 1136
RsaNI GTAC 5 cut(s) 337, 803, 811, 1039, 1135
RseI CAYNNNNRTG 2 cut(s) 194, 285
SaqAI TTAA 2 cut(s) 527, 921
SatI GCNGC 5 cut(s) 64, 76, 118, 227, 230
Sau3AI GATC 5 cut(s) 210, 327, 672, 726, 996
Sau96I GGNCC 3 cut(s) 28, 607, 1070
SchI GAGTC 1 cut(s) 960
ScrFI CCNGG 3 cut(s) 80, 815, 1152
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 3 cut(s) 346, 742, 859
SinI GGWCC 2 cut(s) 607, 1070
SmiMI CAYNNNNRTG 2 cut(s) 194, 285
Sse9I AATT 3 cut(s) 448, 1139, 1156
SsiI CCGC 5 cut(s) 63, 75, 226, 230, 898
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 78, 813, 1150
StyI CCWWGG 2 cut(s) 294, 341
TaaI ACNGT 2 cut(s) 541, 788
TaiI ACGT 3 cut(s) 130, 198, 666
TasI AATT 3 cut(s) 448, 1139, 1156
TatI WGTACW 3 cut(s) 802, 1038, 1134
TauI GCSGC 4 cut(s) 66, 78, 229, 232
TfiI GAWTC 4 cut(s) 83, 239, 443, 552
Tru1I TTAA 2 cut(s) 527, 921
Tru9I TTAA 2 cut(s) 527, 921
TscAI CASTG 2 cut(s) 609, 913
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 3 cut(s) 305, 904, 941
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 2 cut(s) 609, 913
Van91I CCANNNNNTGG 1 cut(s) 399
VpaK11BI GGWCC 2 cut(s) 607, 1070
XapI RAATTY 2 cut(s) 448, 1139
XceI RCATGY 1 cut(s) 106
XmaJI CCTAGG 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.