Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000071.1

Orthogroup ID

OG0004922

Physical Location & Seq

Genomic Coordinates Forward (+)

70074 .. 70958

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000071.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgtctcacctctgcagacttcacggttggggaatccgcgagtaccctaggcgtgtatatgatgctgtgttgttcaataatgagatagacatccttacaatacgatggaaagaactgtatccttacgtaactaaatttgttctcctggagtcaaattcaacgttttctggaattatcaagcctttgtattttgcaagaaacctggatcagttcgactttgttgaaccccggttggtttatgggagggttggaagaacatccaagaaaggagaaaacccatttgtggaagaggcatatcagcgaagagtattggactttctcctccaagaaaaaactggtattaccgacgatgacttgttgataatgtctgatgttgatgagattccaagcagacacactatcaatctcctgaggtggtgtgatgatattcctcaagttcttcatcttcggctgaagaactatctttattccttcgagtttcttgtggacaacaacagttggagggcctcagtacacaggtatcaagagaatgtgaccaaatatgcacactttcgccagacagatgatatcctggcagatgcagggtggcattgcagcttttgttttcgcagaatcagtgagttcatatttaagatgaaggcatacagtcacaatgatcgtatcagatttaacaagtatctaaaccctaaaagagttcaggatgtaatctgcaagggagccgatttgtttgacatgcttccagaagagtacacattcaaggaaatcattggcaaaatgggccctattcctcattcctactcagctgttcatctcccagcatatctattggagaatgcagacaagtataaattcctgttgcctgggaattgcgaaaggcaaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0003830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0008375 GO:0012505 GO:0016020 GO:0016021 GO:0016740 GO:0016757 GO:0016758 GO:0031090 GO:0031224 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791 GO:0140096 GO:0140103

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

294

Amino Acids

34.96

Weight (kDa)

7.65

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12990 AT1G67880
fragaria_vesca	FvH4_4g25670 FvH4_4g25670 FvH4_7g20170
malus_domestica	MD13G1100100.v1.1 MD16G1101100.v1.1
prunus_persica	Prupe.1G245800_v2.0.a1
pyrus_communis	pycom13g08780 pycom16g08550
rosa_chinensis	RchiOBHm_Chr1g0364131 RchiOBHm_Chr4g0433111
rosa_laevigata	RLG00000006785 RLG00000027513
rosa_multiflora	Rmu_sc0000071.1_g000017 Rmu_ssc0000475.1_g000002
rosa_roxburghii	Rroxscaffold_4G00292610 Rroxscaffold_5G00374580
rosa_rugosa	Rorug01G0313800 Rorug04G0265400
rosa_samantha	Rh1AG321300 Rh1BG284500 Rh1CG300900 Rh1DG315900 Rh4AG319500 Rh4BG327700 Rh4CG343100 Rh4DG322900
rosa_wichuraiana	Rw1G028490 Rw4G027760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AciI	CCGC	1 cut(s)	37
AclI	AACGTT	1 cut(s)	161
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	3 cut(s)	134, 154, 848
AcuI	CTGAAG	1 cut(s)	473
AfaI	GTAC	3 cut(s)	44, 513, 749
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	4 cut(s)	76, 159, 224, 757
AjnI	CCWGG	4 cut(s)	144, 201, 570, 859
AluBI	AGCT	3 cut(s)	597, 803, 882
AluI	AGCT	3 cut(s)	597, 803, 882
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	2 cut(s)	504, 778
ApaI	GGGCCC	1 cut(s)	782
ApeKI	GCWGC	1 cut(s)	594
ApoI	RAATTY	3 cut(s)	134, 154, 848
AspA2I	CCTAGG	1 cut(s)	47
AspS9I	GGNCC	3 cut(s)	504, 778, 779
AsuC2I	CCSGG	1 cut(s)	229
AvrII	CCTAGG	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	782
BaeI	ACNNNNGTAYC	2 cut(s)	503, 536
BanII	GRGCYC	1 cut(s)	782
BbvI	GCAGC	1 cut(s)	606
BccI	CCATC	1 cut(s)	99
BciT130I	CCWGG	4 cut(s)	146, 203, 572, 861
BciVI	GTATCC	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	48, 883
BfmI	CTRYAG	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	129
BisI	GCNGC	1 cut(s)	595
BlnI	CCTAGG	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	596
Bme1390I	CCNGG	5 cut(s)	146, 203, 229, 572, 861
BmgT120I	GGNCC	3 cut(s)	504, 778, 779
BmiI	GGNNCC	2 cut(s)	718, 780
BmrFI	CCNGG	5 cut(s)	146, 203, 229, 572, 861
BmsI	GCATC	2 cut(s)	52, 568
BpmI	CTGGAG	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	47, 227, 860
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	340
Bse21I	CCTNAGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	589
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	4 cut(s)	146, 203, 572, 861
BseDI	CCNNGG	3 cut(s)	47, 227, 860
BseGI	GGATG	3 cut(s)	90, 257, 706
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	3 cut(s)	401, 522, 813
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	782
BseXI	GCAGC	1 cut(s)	606
BseYI	CCCAGC	1 cut(s)	814
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	506, 780
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	838
BsnI	GGCC	2 cut(s)	506, 780
Bsp120I	GGGCCC	1 cut(s)	778
Bsp1286I	GDGCHC	1 cut(s)	782
Bsp143I	GATC	2 cut(s)	205, 655
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	506, 780
BspCNI	CTCAG	3 cut(s)	402, 521, 812
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	718, 780
BspMAI	CTGCAG	1 cut(s)	17
BspPI	GGATC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	589
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	3 cut(s)	47, 227, 860
BssMI	GATC	2 cut(s)	205, 655
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	4 cut(s)	146, 203, 572, 861
Bst4CI	ACNGT	4 cut(s)	26, 117, 497, 647
Bst6I	CTCTTC	3 cut(s)	282, 298, 738
BstBAI	YACGTR	1 cut(s)	127
BstDEI	CTNAG	3 cut(s)	410, 508, 799
BstF5I	GGATG	3 cut(s)	90, 257, 706
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	208, 658
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	205, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	777
BstNI	CCWGG	4 cut(s)	146, 203, 572, 861
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	5 cut(s)	144, 201, 227, 570, 859
BstSFI	CTRYAG	1 cut(s)	13
BstSLI	GKGCMC	1 cut(s)	782
BstSNI	TACGTA	1 cut(s)	127
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	606
Bsu36I	CCTNAGG	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	506, 780
BtsCI	GGATG	3 cut(s)	90, 257, 706
BtsIMutI	CAGTG	1 cut(s)	622
Cfr13I	GGNCC	3 cut(s)	504, 778, 779
Csp6I	GTAC	3 cut(s)	43, 512, 748
CviAII	CATG	1 cut(s)	733
CviJI	RGCY	8 cut(s)	181, 451, 506, 597, 719, 780, 803, 882
CviKI_1	RGCY	8 cut(s)	181, 451, 506, 597, 719, 780, 803, 882
CviQI	GTAC	3 cut(s)	43, 512, 748
DdeI	CTNAG	3 cut(s)	410, 508, 799
DpnI	GATC	2 cut(s)	207, 657
DpnII	GATC	2 cut(s)	205, 655
Eam1104I	CTCTTC	3 cut(s)	282, 298, 738
EarI	CTCTTC	3 cut(s)	282, 298, 738
Eco105I	TACGTA	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	782
Eco32I	GATATC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	473
Eco81I	CCTNAGG	1 cut(s)	410
EcoO109I	RGGNCCY	2 cut(s)	504, 779
EcoRII	CCWGG	4 cut(s)	144, 201, 570, 859
EcoRV	GATATC	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	782
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	736
FatI	CATG	1 cut(s)	732
Fnu4HI	GCNGC	1 cut(s)	595
FokI	GGATG	3 cut(s)	77, 244, 713
FriOI	GRGCYC	1 cut(s)	782
Fsp4HI	GCNGC	1 cut(s)	595
FspBI	CTAG	2 cut(s)	48, 883
GluI	GCNGC	1 cut(s)	595
GsaI	CCCAGC	1 cut(s)	818
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	506, 780
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	1 cut(s)	736
HinfI	GANTC	4 cut(s)	33, 149, 382, 612
HpaII	CCGG	1 cut(s)	229
Hpy166II	GTNNAC	3 cut(s)	487, 514, 750
Hpy188I	TCNGA	2 cut(s)	370, 665
Hpy188III	TCNNGA	5 cut(s)	168, 409, 524, 698, 740
Hpy8I	GTNNAC	3 cut(s)	487, 514, 750
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	2 cut(s)	481, 631
HpyCH4III	ACNGT	4 cut(s)	26, 117, 497, 647
HpyCH4IV	ACGT	2 cut(s)	126, 161
HpyCH4V	TGCA	7 cut(s)	15, 194, 545, 581, 594, 711, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	777
HpyF3I	CTNAG	3 cut(s)	410, 508, 799
HpySE526I	ACGT	2 cut(s)	126, 161
Hsp92II	CATG	1 cut(s)	736
Kzo9I	GATC	2 cut(s)	205, 655
LmnI	GCTCC	1 cut(s)	716
Lsp1109I	GCAGC	1 cut(s)	606
LweI	GCATC	2 cut(s)	52, 568
MaeI	CTAG	2 cut(s)	48, 883
MaeII	ACGT	2 cut(s)	126, 161
MaeIII	GTNAC	3 cut(s)	127, 532, 647
MalI	GATC	2 cut(s)	207, 657
MboI	GATC	2 cut(s)	205, 655
MboII	GAAGA	7 cut(s)	264, 299, 315, 431, 437, 466, 755
MhlI	GDGCHC	1 cut(s)	782
MluCI	AATT	5 cut(s)	134, 154, 171, 848, 865
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	229, 479
MnlI	CCTC	9 cut(s)	20, 237, 283, 332, 405, 441, 495, 517, 798
MseI	TTAA	2 cut(s)	630, 669
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	5 cut(s)	146, 203, 229, 572, 861
Mva1269I	GAATGC	1 cut(s)	838
MvaI	CCWGG	4 cut(s)	146, 203, 572, 861
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	777
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	2 cut(s)	205, 655
NlaIII	CATG	1 cut(s)	736
NlaIV	GGNNCC	2 cut(s)	718, 780
NmuCI	GTSAC	2 cut(s)	532, 647
NspI	RCATGY	1 cut(s)	736
PctI	GAATGC	1 cut(s)	838
PfeI	GAWTC	3 cut(s)	33, 382, 612
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	596
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	127
Psp1406I	AACGTT	1 cut(s)	161
Psp6I	CCWGG	4 cut(s)	144, 201, 570, 859
PspFI	CCCAGC	1 cut(s)	814
PspGI	CCWGG	4 cut(s)	144, 201, 570, 859
PspN4I	GGNNCC	2 cut(s)	718, 780
PspOMI	GGGCCC	1 cut(s)	778
PspPI	GGNCC	3 cut(s)	504, 778, 779
PstI	CTGCAG	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	3 cut(s)	44, 513, 749
RsaNI	GTAC	3 cut(s)	43, 512, 748
SaqAI	TTAA	2 cut(s)	630, 669
SatI	GCNGC	1 cut(s)	595
Sau3AI	GATC	2 cut(s)	205, 655
Sau96I	GGNCC	3 cut(s)	504, 778, 779
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	5 cut(s)	146, 203, 229, 572, 861
SduI	GDGCHC	1 cut(s)	782
SetI	ASST	9 cut(s)	12, 129, 164, 204, 416, 521, 599, 805, 884
SfaNI	GCATC	2 cut(s)	52, 568
SfcI	CTRYAG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
SnaBI	TACGTA	1 cut(s)	127
Sse9I	AATT	5 cut(s)	134, 154, 171, 848, 865
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	2 cut(s)	48, 883
StyD4I	CCNGG	5 cut(s)	144, 201, 227, 570, 859
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	4 cut(s)	26, 117, 497, 647
TaiI	ACGT	2 cut(s)	129, 164
TaqI	TCGA	2 cut(s)	213, 474
TasI	AATT	5 cut(s)	134, 154, 171, 848, 865
TatI	WGTACW	2 cut(s)	511, 747
TfiI	GAWTC	3 cut(s)	33, 382, 612
Tru1I	TTAA	2 cut(s)	630, 669
Tru9I	TTAA	2 cut(s)	630, 669
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	2 cut(s)	532, 647
TseI	GCWGC	1 cut(s)	594
Tsp45I	GTSAC	2 cut(s)	532, 647
TspDTI	ATGAA	4 cut(s)	431, 613, 650, 797
TspRI	CASTG	1 cut(s)	622
XapI	RAATTY	3 cut(s)	134, 154, 848
XceI	RCATGY	1 cut(s)	736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmaJI	CCTAGG	1 cut(s)	47
XspI	CTAG	2 cut(s)	48, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.