Rh1DG315900

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004922
Physical Location & Seq
Reverse (-)
54232665 .. 54234542
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG315900.1

Sequence Viewer

Length: 1167 bp
ATGATGGGTGAAAGAGGAGGTCCTTACCGCTCTAAGAATTCTAAGAAGACTGACGATTACTGCGCTGATGAATCAGGTAGACTATTAAGCACGTCAAGAGCTGGCTGCATTCTCGGTGGGTTTGATATAAGAGCTCTCATAATTCTCATTATCCTCATTCCAACCTGCATTTTTGGCATATATGCGCATGGACAGAAGGTTTCATACTTGTTGCGACCATTATGGGAATCAGCACCCAAACCTTTCCATGATATCCCACACTATTATCACGAGAGTGCGTCCATGTCTCACCTCTGCAGACTTCACGGTTGGGGCATCCGCGAGTACCCTAGGCGTGTATATGATGCTGTGTTGTTCAATAATGAGATAGACATCCTTACAATACGATGGAAAGAACTGTATCCTTACGTAACTAAATTTGTTCTCCTGGAGTCAAATTCAACGTTTTCTGGAATTATCAAGCCTTTGTATTTTGCAAGAAACCGGGATCAGTTCGACTTTGTTGAACCTCGGTTAGTTTATGGGAGGGTTGGAAGAACATCCAAGAAAGGAGAAAACCCATTTGTTGAGGAGGCATATCAGCGAAGAGTATTGGACTTTCTCCTCCAAGAAAAAGCTGGTATTACCGACGATGACCTGTTGATAATGTCTGATGTTGATGAGATCCCAAGCAGACACACCATCAATCTCCTGAGGTGGTGTGATGGTATTCCTCAAGTTCTTCATCTTCGGCTGAAGAACTATCTTTATTCGTTTGAGTTTCTTGTGGACAACAACAGTTGGAGGGCCTCAGTACACAGGTTTCAAGAGAATGTGACCAAATATGCTCACTTTCGCCAGACAGATGATATCCTGGCAGATGCAGGGTGGCATTGCAGCTTTTGTTTTCGCAGAATCAGTGAGTTCATATTTAAGATGAAGGCATACAGTCACAATGATCGTATCAGATTTAACCAGTATCTAAACCCTAAAAGAGTTCAGGATGTAATCTGCAAGGGAGACGATTTGTTTGACATGCTTCCAGAAGAGTACACATTCAAGGAAATCATTGGCAAAATGGGCCCTATTCCTCATTCCTACTCAGCTGTCAATCTACCAGCCTATCTGTTGGAGAATGCAGACAAGTATAAATTCCTGTTGCCTGGGAATTGCGAAAGACAAAGCTAG

Protein Analysis

388

Amino Acids

45.42

Weight (kDa)

8.25

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 42 - 387 3.6e-180 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 30
AccI GTMKAC 1 cut(s) 79
AccII CGCG 1 cut(s) 321
AciI CCGC 2 cut(s) 28, 319
AclI AACGTT 1 cut(s) 443
AclWI GGATC 2 cut(s) 495, 658
AcsI RAATTY 4 cut(s) 37, 416, 436, 1130
AcuI CTGAAG 1 cut(s) 755
AfaI GTAC 3 cut(s) 326, 795, 1031
AgsI TTSAA 5 cut(s) 358, 441, 506, 806, 1039
AjiI CACGTC 1 cut(s) 93
AjnI CCWGG 3 cut(s) 426, 852, 1141
AleI CACNNNNGTG 1 cut(s) 273
AluBI AGCT 6 cut(s) 101, 134, 617, 879, 1085, 1164
AluI AGCT 6 cut(s) 101, 134, 617, 879, 1085, 1164
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 2 cut(s) 291, 993
AlwI GGATC 2 cut(s) 495, 658
AoxI GGCC 2 cut(s) 786, 1060
ApaI GGGCCC 1 cut(s) 1064
ApeKI GCWGC 2 cut(s) 105, 876
ApoI RAATTY 4 cut(s) 37, 416, 436, 1130
ArsI GACNNNNNNTTYG 2 cut(s) 992, 1024
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 2 cut(s) 65, 187
AspS9I GGNCC 4 cut(s) 20, 786, 1060, 1061
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 2 cut(s) 20, 281
AvaII GGWCC 1 cut(s) 20
AvrII CCTAGG 1 cut(s) 329
AxyI CCTNAGG 1 cut(s) 692
BaeGI GKGCMC 1 cut(s) 1064
BanII GRGCYC 2 cut(s) 136, 1064
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 92, 888
BccI CCATC 3 cut(s) 381, 689, 698
BciT130I CCWGG 3 cut(s) 428, 854, 1143
BciVI GTATCC 1 cut(s) 411
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 2 cut(s) 291, 993
BfaI CTAG 2 cut(s) 330, 1165
BfmI CTRYAG 1 cut(s) 295
BfuAI ACCTGC 1 cut(s) 173
BfuI GTATCC 1 cut(s) 411
BisI GCNGC 2 cut(s) 106, 877
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 2 cut(s) 107, 878
Bme1390I CCNGG 4 cut(s) 428, 485, 854, 1143
Bme18I GGWCC 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 93
BmgT120I GGNCC 4 cut(s) 20, 786, 1060, 1061
BmiI GGNNCC 1 cut(s) 1062
BmrFI CCNGG 4 cut(s) 428, 485, 854, 1143
BmsI GCATC 3 cut(s) 324, 334, 850
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 699
BpuMI CCSGG 1 cut(s) 485
BsaAI YACGTR 1 cut(s) 409
BsaBI GATNNNNATC 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 329, 509, 1142
Bse1I ACTGG 1 cut(s) 955
Bse21I CCTNAGG 1 cut(s) 692
Bse3DI GCAATG 1 cut(s) 871
Bse8I GATNNNNATC 1 cut(s) 371
BseBI CCWGG 3 cut(s) 428, 854, 1143
BseDI CCNNGG 3 cut(s) 329, 509, 1142
BseGI GGATG 4 cut(s) 315, 372, 539, 988
BseJI GATNNNNATC 1 cut(s) 371
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 3 cut(s) 683, 804, 1095
BseNI ACTGG 1 cut(s) 955
BseRI GAGGAG 3 cut(s) 30, 584, 593
BseSI GKGCMC 1 cut(s) 1064
BseXI GCAGC 2 cut(s) 92, 888
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 788, 1062
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 484
BsmAI GTCTC 2 cut(s) 291, 993
BsmBI CGTCTC 1 cut(s) 993
BsmI GAATGC 2 cut(s) 108, 1120
BsnI GGCC 2 cut(s) 788, 1062
Bsp120I GGGCCC 1 cut(s) 1060
Bsp1286I GDGCHC 2 cut(s) 136, 1064
Bsp143I GATC 3 cut(s) 487, 663, 937
BspACI CCGC 2 cut(s) 28, 319
BspANI GGCC 2 cut(s) 788, 1062
BspCNI CTCAG 3 cut(s) 684, 803, 1094
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 1062
BspMAI CTGCAG 1 cut(s) 299
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 2 cut(s) 495, 658
BsrBI CCGCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 871
BsrI ACTGG 1 cut(s) 955
BssECI CCNNGG 3 cut(s) 329, 509, 1142
BssMI GATC 3 cut(s) 487, 663, 937
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 3 cut(s) 428, 854, 1143
Bst4CI ACNGT 4 cut(s) 308, 399, 779, 929
Bst6I CTCTTC 2 cut(s) 580, 1020
BstBAI YACGTR 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 5 cut(s) 33, 42, 692, 790, 1081
BstF5I GGATG 4 cut(s) 315, 372, 539, 988
BstFNI CGCG 1 cut(s) 321
BstHHI GCGC 2 cut(s) 65, 187
BstKTI GATC 3 cut(s) 490, 666, 940
BstMAI GTCTC 2 cut(s) 291, 993
BstMBI GATC 3 cut(s) 487, 663, 937
BstMWI GCNNNNNNNGC 2 cut(s) 174, 1059
BstNI CCWGG 3 cut(s) 428, 854, 1143
BstNSI RCATGY 1 cut(s) 1018
BstSCI CCNGG 4 cut(s) 426, 483, 852, 1141
BstSFI CTRYAG 1 cut(s) 295
BstSLI GKGCMC 1 cut(s) 1064
BstSNI TACGTA 1 cut(s) 409
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 92, 888
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 663
BstYI RGATCY 1 cut(s) 663
Bsu36I CCTNAGG 1 cut(s) 692
BsuI GTATCC 1 cut(s) 411
BsuRI GGCC 2 cut(s) 788, 1062
BtrI CACGTC 1 cut(s) 93
BtsCI GGATG 4 cut(s) 315, 372, 539, 988
BtsIMutI CAGTG 1 cut(s) 904
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 2 cut(s) 65, 187
Cfr13I GGNCC 4 cut(s) 20, 786, 1060, 1061
CseI GACGC 1 cut(s) 267
Csp6I GTAC 3 cut(s) 325, 794, 1030
CviAII CATG 4 cut(s) 188, 248, 283, 1015
CviQI GTAC 3 cut(s) 325, 794, 1030
DdeI CTNAG 5 cut(s) 33, 42, 692, 790, 1081
DpnI GATC 3 cut(s) 489, 665, 939
DpnII GATC 3 cut(s) 487, 663, 937
Eam1104I CTCTTC 2 cut(s) 580, 1020
EarI CTCTTC 2 cut(s) 580, 1020
Ecl136II GAGCTC 1 cut(s) 134
Eco105I TACGTA 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 329
Eco24I GRGCYC 2 cut(s) 136, 1064
Eco32I GATATC 2 cut(s) 253, 850
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 755
Eco81I CCTNAGG 1 cut(s) 692
EcoICRI GAGCTC 1 cut(s) 134
EcoO109I RGGNCCY 3 cut(s) 20, 786, 1061
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 3 cut(s) 426, 852, 1141
EcoRV GATATC 2 cut(s) 253, 850
EcoT14I CCWWGG 1 cut(s) 329
EcoT38I GRGCYC 2 cut(s) 136, 1064
ErhI CCWWGG 1 cut(s) 329
Esp3I CGTCTC 1 cut(s) 993
FaeI CATG 4 cut(s) 191, 251, 286, 1018
FatI CATG 4 cut(s) 187, 247, 282, 1014
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 106, 877
FokI GGATG 4 cut(s) 302, 359, 526, 995
FriOI GRGCYC 2 cut(s) 136, 1064
Fsp4HI GCNGC 2 cut(s) 106, 877
FspAI RTGCGCAY 1 cut(s) 186
FspBI CTAG 2 cut(s) 330, 1165
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 2 cut(s) 64, 186
GluI GCNGC 2 cut(s) 106, 877
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 2 cut(s) 788, 1062
HapII CCGG 1 cut(s) 484
HgaI GACGC 1 cut(s) 267
HhaI GCGC 2 cut(s) 65, 187
Hin1II CATG 4 cut(s) 191, 251, 286, 1018
Hin6I GCGC 2 cut(s) 63, 185
HinP1I GCGC 2 cut(s) 63, 185
HinfI GANTC 4 cut(s) 71, 227, 431, 894
HpaII CCGG 1 cut(s) 484
HphI GGTGA 2 cut(s) 20, 281
Hpy166II GTNNAC 4 cut(s) 80, 769, 796, 1032
Hpy188I TCNGA 2 cut(s) 652, 947
Hpy188III TCNNGA 7 cut(s) 96, 269, 450, 691, 806, 980, 1022
Hpy8I GTNNAC 4 cut(s) 80, 769, 796, 1032
Hpy99I CGWCG 1 cut(s) 632
HpyAV CCTTC 2 cut(s) 190, 913
HpyCH4III ACNGT 4 cut(s) 308, 399, 779, 929
HpyCH4IV ACGT 3 cut(s) 92, 408, 443
HpyCH4V TGCA 8 cut(s) 108, 168, 297, 476, 863, 876, 993, 1118
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 1059
HpyF3I CTNAG 5 cut(s) 33, 42, 692, 790, 1081
HpySE526I ACGT 3 cut(s) 92, 408, 443
Hsp92II CATG 4 cut(s) 191, 251, 286, 1018
HspAI GCGC 2 cut(s) 63, 185
Kzo9I GATC 3 cut(s) 487, 663, 937
Lsp1109I GCAGC 2 cut(s) 92, 888
LweI GCATC 3 cut(s) 324, 334, 850
MaeI CTAG 2 cut(s) 330, 1165
MaeII ACGT 3 cut(s) 92, 408, 443
MaeIII GTNAC 3 cut(s) 409, 814, 929
MalI GATC 3 cut(s) 489, 665, 939
MbiI CCGCTC 1 cut(s) 30
MboI GATC 3 cut(s) 487, 663, 937
MboII GAAGA 7 cut(s) 58, 546, 597, 713, 719, 748, 1037
MflI RGATCY 1 cut(s) 663
MhlI GDGCHC 2 cut(s) 136, 1064
MluCI AATT 7 cut(s) 37, 141, 416, 436, 453, 1130, 1147
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 4 cut(s) 185, 511, 761, 1089
MseI TTAA 3 cut(s) 86, 912, 951
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 1085
MspI CCGG 1 cut(s) 484
MspR9I CCNGG 4 cut(s) 428, 485, 854, 1143
Mva1269I GAATGC 2 cut(s) 108, 1120
MvaI CCWGG 3 cut(s) 428, 854, 1143
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 174, 1059
NciI CCSGG 1 cut(s) 485
NdeII GATC 3 cut(s) 487, 663, 937
NlaIII CATG 4 cut(s) 191, 251, 286, 1018
NlaIV GGNNCC 1 cut(s) 1062
NmuCI GTSAC 2 cut(s) 814, 929
NsbI TGCGCA 1 cut(s) 186
NspI RCATGY 1 cut(s) 1018
OliI CACNNNNGTG 1 cut(s) 273
PctI GAATGC 2 cut(s) 108, 1120
PfeI GAWTC 3 cut(s) 71, 227, 894
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 2 cut(s) 107, 878
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Ppu21I YACGTR 1 cut(s) 409
PpuMI RGGWCCY 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 136
Psp1406I AACGTT 1 cut(s) 443
Psp5II RGGWCCY 1 cut(s) 20
Psp6I CCWGG 3 cut(s) 426, 852, 1141
PspGI CCWGG 3 cut(s) 426, 852, 1141
PspN4I GGNNCC 1 cut(s) 1062
PspOMI GGGCCC 1 cut(s) 1060
PspPI GGNCC 4 cut(s) 20, 786, 1060, 1061
PspPPI RGGWCCY 1 cut(s) 20
PstI CTGCAG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 663
PvuII CAGCTG 1 cut(s) 1085
RsaI GTAC 3 cut(s) 326, 795, 1031
RsaNI GTAC 3 cut(s) 325, 794, 1030
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 136
SaqAI TTAA 3 cut(s) 86, 912, 951
SatI GCNGC 2 cut(s) 106, 877
Sau3AI GATC 3 cut(s) 487, 663, 937
Sau96I GGNCC 4 cut(s) 20, 786, 1060, 1061
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 4 cut(s) 428, 485, 854, 1143
SduI GDGCHC 2 cut(s) 136, 1064
SfaNI GCATC 3 cut(s) 324, 334, 850
SfcI CTRYAG 1 cut(s) 295
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
SnaBI TACGTA 1 cut(s) 409
Sse9I AATT 7 cut(s) 37, 141, 416, 436, 453, 1130, 1147
SsiI CCGC 2 cut(s) 28, 319
SspMI CTAG 2 cut(s) 330, 1165
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 4 cut(s) 426, 483, 852, 1141
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 4 cut(s) 308, 399, 779, 929
TaiI ACGT 3 cut(s) 95, 411, 446
TaqI TCGA 1 cut(s) 495
TasI AATT 7 cut(s) 37, 141, 416, 436, 453, 1130, 1147
TatI WGTACW 2 cut(s) 793, 1029
TfiI GAWTC 3 cut(s) 71, 227, 894
Tru1I TTAA 3 cut(s) 86, 912, 951
Tru9I TTAA 3 cut(s) 86, 912, 951
TscAI CASTG 1 cut(s) 904
TseFI GTSAC 2 cut(s) 814, 929
TseI GCWGC 2 cut(s) 105, 876
Tsp45I GTSAC 2 cut(s) 814, 929
TspDTI ATGAA 5 cut(s) 84, 192, 713, 895, 932
TspRI CASTG 1 cut(s) 904
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 4 cut(s) 37, 416, 436, 1130
XceI RCATGY 1 cut(s) 1018
XcmI CCANNNNNNNNNTGG 1 cut(s) 614
XmaJI CCTAGG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 79
XspI CTAG 2 cut(s) 330, 1165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.