pycom13g08780

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0004922
Physical Location & Seq
Reverse (-)
5799758 .. 5801660
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08780.1

Sequence Viewer

Length: 1179 bp
ATGTGGTGGATGATGGGCGAGGGAGGAGGCCAGTACTGCTCCAAGAAGACTGATGATATCTGCGACAATGTTTGCGGCCAGGAATCAGGCAGAATGTTGAGCATGGCAAGAGTTCGCTGCATTCTACGTGGATTTGACTTCAAAGTTCTCCTCATTCTGTTTACACTTATTCCGTTGTGTATCTTTGGCATTTACGTGCATGGACAGAAGATCTCATACTTCTTGCGGCCGCTATGGGAATCGCCACCCAAACCTTTCCATGATATTCCACACTACTATCACGAGAATGTGTCCATGGAGAACCTCTGCAAGCTTCATGGTTGGGGGATCCGTGAGTATCCTAGGCGTGTCTTTGATGCTGTGTTGTTCAGTAATGAGATGGACATCCTTACCATAAGATGGAAAGAATTGTATCCCTACATAACACAGTTTGTTCTCCTTGAGTCAAATTCAACATTTACTGGATTTCCAAAGCCTCTGTTCTTTTCCCGTTATCGCGAGCAGTTCAAGTTTGTGGAGCCCCGGTTAACTTATGGGACTTTTGGAGGAAGATTCAAGAGAGGTGAAAATCCATTTGTTGAGGAGGCATATCAACGAGTAGCACTGGACCAGCTTCTCAAAATAGCTGGTATTACTGAGGACGACTTGTTGATAATGTCTGACGTTGATGAGATCCCAAGCAGACACACCATCAATCTTTTGAGGTGGTGTGACGAAGTTCCTCAAATCTTACATCTTCAGTTGAAGAACTATCTCTATTCCTTTGAGTTTCTGGTGGACAATAACAGTTGGAGAGCTTCAGTACACAGGTATCGGGAAGGGGTGACGAAATATGCGCACTATCGGCAGACGGATGACATCTTAGCAGATGCAGGGTGGCATTGTAGCTTTTGTTTCCGCTATATCAGTGAGTTCATCTTCAAGATGAAAGCATACAGCCATTATGATAGAGTCAGGTTTTCAAAGTATCTAAACCCAACAAGAGTTCAGAAAGTGATCTGCAAGGGGTCTGATTTATTTGATATGCTTCCCGAAGAGTACACGTTCAAGGAAATCATCGGGAAAATGGGACCTATTCCTCATTCCTTCTCTGGTGTCCATCTTCCTTCCTTTCTGTTGGAGAATGCAGAGAAGTATAAATTTCTCTTGCCTGGGAATTGCAGAAGAGAGAGTGAGTGA

Protein Analysis

393

Amino Acids

46.41

Weight (kDa)

7.94

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 45 - 390 6e-186 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 837
AccB7I CCANNNNNTGG 1 cut(s) 399
AccII CGCG 1 cut(s) 498
AciI CCGC 4 cut(s) 75, 226, 230, 898
AclWI GGATC 3 cut(s) 322, 335, 667
AcoI YGGCCR 2 cut(s) 76, 227
AcsI RAATTY 2 cut(s) 448, 1139
AcuI CTGAAG 2 cut(s) 722, 783
AfaI GTAC 3 cut(s) 35, 804, 1040
AfiI CCNNNNNNNGG 1 cut(s) 399
AflIII ACRYGT 1 cut(s) 1041
AgsI TTSAA 8 cut(s) 142, 453, 508, 556, 745, 922, 963, 1048
AjnI CCWGG 2 cut(s) 78, 1150
AluBI AGCT 5 cut(s) 313, 613, 626, 797, 888
AluI AGCT 5 cut(s) 313, 613, 626, 797, 888
AlwI GGATC 3 cut(s) 322, 335, 667
AoxI GGCC 3 cut(s) 28, 76, 227
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 2 cut(s) 448, 1139
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 1 cut(s) 838
AspS9I GGNCC 2 cut(s) 607, 1070
AsuC2I CCSGG 1 cut(s) 523
AsuHPI GGTGA 2 cut(s) 575, 835
AvaII GGWCC 2 cut(s) 607, 1070
AvrII CCTAGG 1 cut(s) 341
BaeI ACNNNNGTAYC 2 cut(s) 794, 827
BamHI GGATCC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BauI CACGAG 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 104
BccI CCATC 5 cut(s) 7, 373, 393, 698, 1107
BciT130I CCWGG 2 cut(s) 80, 1152
BciVI GTATCC 2 cut(s) 348, 423
BcnI CCSGG 1 cut(s) 523
BfaI CTAG 1 cut(s) 342
BfuI GTATCC 2 cut(s) 348, 423
BglII AGATCT 1 cut(s) 210
BisI GCNGC 4 cut(s) 76, 118, 227, 230
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 4 cut(s) 77, 119, 228, 231
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 3 cut(s) 80, 523, 1152
Bme18I GGWCC 2 cut(s) 607, 1070
BmgT120I GGNCC 2 cut(s) 607, 1070
BmiI GGNNCC 3 cut(s) 329, 519, 1071
BmrFI CCNGG 3 cut(s) 80, 523, 1152
BmsI GCATC 2 cut(s) 346, 859
BpiI GAAGAC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 523
BsaAI YACGTR 2 cut(s) 128, 196
BsaBI GATNNNNATC 1 cut(s) 383
BsaJI CCNNGG 4 cut(s) 294, 341, 521, 1151
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 3 cut(s) 31, 466, 609
Bse8I GATNNNNATC 1 cut(s) 383
BseBI CCWGG 2 cut(s) 80, 1152
BseDI CCNNGG 4 cut(s) 294, 341, 521, 1151
BseGI GGATG 3 cut(s) 15, 384, 859
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 3 cut(s) 31, 466, 609
BseRI GAGGAG 3 cut(s) 39, 140, 596
BseX3I CGGCCG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 230
BshFI GGCC 3 cut(s) 30, 78, 229
BsiEI CGRYCG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 523
BslFI GGGAC 2 cut(s) 550, 1083
BslI CCNNNNNNNGG 1 cut(s) 399
BsmFI GGGAC 2 cut(s) 550, 1083
BsmI GAATGC 2 cut(s) 120, 1129
BsnI GGCC 3 cut(s) 30, 78, 229
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 4 cut(s) 210, 327, 672, 996
Bsp19I CCATGG 1 cut(s) 294
Bsp68I TCGCGA 1 cut(s) 498
BspACI CCGC 4 cut(s) 75, 226, 230, 898
BspANI GGCC 3 cut(s) 30, 78, 229
BspCNI CTCAG 1 cut(s) 628
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 329, 519, 1071
BspPI GGATC 3 cut(s) 322, 335, 667
BsrI ACTGG 3 cut(s) 31, 466, 609
BssECI CCNNGG 4 cut(s) 294, 341, 521, 1151
BssMI GATC 4 cut(s) 210, 327, 672, 996
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 294, 341
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 80, 1152
Bst4CI ACNGT 2 cut(s) 429, 788
Bst6I CTCTTC 2 cut(s) 1029, 1159
BstBAI YACGTR 2 cut(s) 128, 196
BstC8I GCNNGC 2 cut(s) 311, 500
BstDEI CTNAG 2 cut(s) 636, 862
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 3 cut(s) 15, 384, 859
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 1 cut(s) 838
BstKTI GATC 4 cut(s) 213, 330, 675, 999
BstMBI GATC 4 cut(s) 210, 327, 672, 996
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 2 cut(s) 36, 844
BstNI CCWGG 2 cut(s) 80, 1152
BstSCI CCNGG 3 cut(s) 78, 521, 1150
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 3 cut(s) 210, 327, 672
BstYI RGATCY 3 cut(s) 210, 327, 672
BstZI CGGCCG 1 cut(s) 227
BsuI GTATCC 2 cut(s) 348, 423
BsuRI GGCC 3 cut(s) 30, 78, 229
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 15, 384, 859
BtsIMutI CAGTG 2 cut(s) 602, 913
BtuMI TCGCGA 1 cut(s) 498
Cac8I GCNNGC 2 cut(s) 311, 500
CciNI GCGGCCGC 1 cut(s) 227
CfoI GCGC 1 cut(s) 838
Cfr13I GGNCC 2 cut(s) 607, 1070
Csp6I GTAC 3 cut(s) 34, 803, 1039
CviAII CATG 5 cut(s) 103, 200, 260, 295, 317
CviQI GTAC 3 cut(s) 34, 803, 1039
DdeI CTNAG 2 cut(s) 636, 862
DpnI GATC 4 cut(s) 212, 329, 674, 998
DpnII GATC 4 cut(s) 210, 327, 672, 996
EaeI YGGCCR 2 cut(s) 76, 227
EagI CGGCCG 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 1029, 1159
EarI CTCTTC 2 cut(s) 1029, 1159
EclXI CGGCCG 1 cut(s) 227
Eco130I CCWWGG 2 cut(s) 294, 341
Eco24I GRGCYC 1 cut(s) 522
Eco32I GATATC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 607, 1070
Eco52I CGGCCG 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 722, 783
EcoO109I RGGNCCY 1 cut(s) 1070
EcoRII CCWGG 2 cut(s) 78, 1150
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 2 cut(s) 294, 341
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 294, 341
FaeI CATG 5 cut(s) 106, 203, 263, 298, 320
FaqI GGGAC 2 cut(s) 550, 1083
FatI CATG 5 cut(s) 102, 199, 259, 294, 316
Fnu4HI GCNGC 4 cut(s) 76, 118, 227, 230
FokI GGATG 3 cut(s) 22, 371, 866
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 4 cut(s) 76, 118, 227, 230
FspAI RTGCGCAY 1 cut(s) 837
FspBI CTAG 1 cut(s) 342
FspI TGCGCA 1 cut(s) 837
GlaI GCGC 1 cut(s) 837
GluI GCNGC 4 cut(s) 76, 118, 227, 230
HaeIII GGCC 3 cut(s) 30, 78, 229
HapII CCGG 1 cut(s) 523
HhaI GCGC 1 cut(s) 838
Hin1II CATG 5 cut(s) 106, 203, 263, 298, 320
Hin6I GCGC 1 cut(s) 836
HinP1I GCGC 1 cut(s) 836
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 5 cut(s) 83, 239, 443, 552, 951
HpaI GTTAAC 1 cut(s) 528
HpaII CCGG 1 cut(s) 523
HphI GGTGA 2 cut(s) 575, 835
Hpy166II GTNNAC 5 cut(s) 162, 528, 778, 805, 1041
Hpy188I TCNGA 3 cut(s) 661, 990, 1012
Hpy188III TCNNGA 7 cut(s) 281, 497, 556, 815, 922, 1031, 1060
Hpy8I GTNNAC 5 cut(s) 162, 528, 778, 805, 1041
HpyAV CCTTC 3 cut(s) 812, 1096, 1116
HpyCH4III ACNGT 2 cut(s) 429, 788
HpyCH4IV ACGT 4 cut(s) 127, 195, 663, 1043
HpyCH4V TGCA 7 cut(s) 120, 199, 309, 872, 1002, 1127, 1161
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 844
HpyF3I CTNAG 2 cut(s) 636, 862
HpySE526I ACGT 4 cut(s) 127, 195, 663, 1043
Hsp92II CATG 5 cut(s) 106, 203, 263, 298, 320
HspAI GCGC 1 cut(s) 836
KspAI GTTAAC 1 cut(s) 528
Kzo9I GATC 4 cut(s) 210, 327, 672, 996
LmnI GCTCC 2 cut(s) 44, 517
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 2 cut(s) 346, 859
MaeI CTAG 1 cut(s) 342
MaeII ACGT 4 cut(s) 127, 195, 663, 1043
MaeIII GTNAC 2 cut(s) 710, 823
MalI GATC 4 cut(s) 212, 329, 674, 998
MboI GATC 4 cut(s) 210, 327, 672, 996
MboII GAAGA 9 cut(s) 58, 220, 561, 728, 757, 910, 1046, 1094, 1176
MflI RGATCY 3 cut(s) 210, 327, 672
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 4 cut(s) 407, 448, 1139, 1156
MlyI GAGTC 2 cut(s) 452, 960
MmeI TCCRAC 2 cut(s) 770, 1098
MseI TTAA 1 cut(s) 527
MslI CAYNNNNRTG 2 cut(s) 194, 285
MspI CCGG 1 cut(s) 523
MspR9I CCNGG 3 cut(s) 80, 523, 1152
Mva1269I GAATGC 2 cut(s) 120, 1129
MvaI CCWGG 2 cut(s) 80, 1152
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 2 cut(s) 36, 844
NciI CCSGG 1 cut(s) 523
NcoI CCATGG 1 cut(s) 294
NdeII GATC 4 cut(s) 210, 327, 672, 996
NlaIII CATG 5 cut(s) 106, 203, 263, 298, 320
NlaIV GGNNCC 3 cut(s) 329, 519, 1071
NmuCI GTSAC 2 cut(s) 710, 823
NotI GCGGCCGC 1 cut(s) 227
NruI TCGCGA 1 cut(s) 498
NsbI TGCGCA 1 cut(s) 837
PctI GAATGC 2 cut(s) 120, 1129
PfeI GAWTC 3 cut(s) 83, 239, 552
PflMI CCANNNNNTGG 1 cut(s) 399
PkrI GCNGC 4 cut(s) 77, 119, 228, 231
PleI GAGTC 2 cut(s) 451, 959
PpsI GAGTC 2 cut(s) 451, 959
Ppu21I YACGTR 2 cut(s) 128, 196
PpuMI RGGWCCY 1 cut(s) 1070
Psp5II RGGWCCY 1 cut(s) 1070
Psp6I CCWGG 2 cut(s) 78, 1150
PspGI CCWGG 2 cut(s) 78, 1150
PspN4I GGNNCC 3 cut(s) 329, 519, 1071
PspPI GGNCC 2 cut(s) 607, 1070
PspPPI RGGWCCY 1 cut(s) 1070
PsuI RGATCY 3 cut(s) 210, 327, 672
RruI TCGCGA 1 cut(s) 498
RsaI GTAC 3 cut(s) 35, 804, 1040
RsaNI GTAC 3 cut(s) 34, 803, 1039
RseI CAYNNNNRTG 2 cut(s) 194, 285
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 4 cut(s) 76, 118, 227, 230
Sau3AI GATC 4 cut(s) 210, 327, 672, 996
Sau96I GGNCC 2 cut(s) 607, 1070
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 2 cut(s) 452, 960
ScrFI CCNGG 3 cut(s) 80, 523, 1152
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 2 cut(s) 346, 859
SinI GGWCC 2 cut(s) 607, 1070
SmiMI CAYNNNNRTG 2 cut(s) 194, 285
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 407, 448, 1139, 1156
SsiI CCGC 4 cut(s) 75, 226, 230, 898
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 78, 521, 1150
StyI CCWWGG 2 cut(s) 294, 341
TaaI ACNGT 2 cut(s) 429, 788
TaiI ACGT 4 cut(s) 130, 198, 666, 1046
TasI AATT 4 cut(s) 407, 448, 1139, 1156
TatI WGTACW 3 cut(s) 33, 802, 1038
TauI GCSGC 3 cut(s) 78, 229, 232
TfiI GAWTC 3 cut(s) 83, 239, 552
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TscAI CASTG 2 cut(s) 609, 913
TseFI GTSAC 2 cut(s) 710, 823
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 2 cut(s) 710, 823
TspDTI ATGAA 3 cut(s) 305, 904, 941
TspGWI ACGGA 3 cut(s) 162, 320, 866
TspRI CASTG 2 cut(s) 609, 913
Van91I CCANNNNNTGG 1 cut(s) 399
VpaK11BI GGWCC 2 cut(s) 607, 1070
XapI RAATTY 2 cut(s) 448, 1139
XmaJI CCTAGG 1 cut(s) 341
XspI CTAG 1 cut(s) 342
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.