FvH4_4g25670

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004922
Physical Location & Seq
Forward (+)
27389181 .. 27392103
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25670.t2

Sequence Viewer

Length: 1176 bp
ATGTGGTGGATGATGGGCGAGGGTGGAGGTGCTTACTGCTCTAAGAAGACCGACGATTACTGCGCCGATGTTTGTGGCCAGGAATCAGGTCGACTGATAAGCATGTCAAGAGTCCGCTGCATTCTCCGTGGCTTTGATTTAAGGGCTCTCATCCTTATCATCATGCTTATTCCAACATGCATCTTTGGCATATATGCACATGGACAGAAGATCTCATACTTCTTGCGGCCGCTATGGGAGTCACCGCCCAAACCTTTCCATGACATCCCACACTATTATCATGAGAATGTGCCCATGGAGAAGCTCTGCAAACTTCACGGCTGGGGCATCCGCGAGTACCCAAGGCGTGTCTACGATGCTGTGTTGTTCAGTAATGAGATGGATATCCTTACAATAAGATGGAAAGAGCTGTATCCCTACATAACGAAATTTGTTCTGTTGGAGTCAAATTCCACATTTTCTGGACTTTACAAGCCTCTTCATTTTGCACGAAATCGGGAGCAGTTTGATTTTGTTGAACCCCGGTTGGAATATGGGACAGTTGGAAGAACATCCCAGAAAGGGGACAACCCATTTGTTGAGGAGGCATATCAGCGATTAGCTTTGGACAACCTTCTTCAATTAGCTGGTATTACCGACGACGACTTGTTGATAATGTCGGATGTGGATGAGATCCCAAGCAGACACACTATCAATCTCCTGAGGTGGTGTGATGATACCCCTGAAGTTATTCATCTTCGGCTGAAGAACTATCTTTATTCCTTCGAGTTTCTTGTAGACAACAACAGTTGGAGGGCCTCAGTACACAGGTATCGAGAGAATGTGACCAAATATGCGCACTATCGGCAGACAGATGAAGTCCTGGCAGATGCAGGGTGGCATTGCAGCTTTTGTTTTCGCAAAATTAGTGAGTTCATATTTAAGATGAAGGCATACAGTCACAATGATCGAATCAGATTTAATAAGTATCTCAACCCTACAAGAGTGCAGAAGGTAATCTGCAACGGAGATGATCTGTTTGATATGCTTCCAGAAGAGTACACATTCAAGGACATCATCGGCAAAATGGGCCCTATTCCTCATTCCTACTCGGCTGTTCATCTCCCGTCCTATCTGTTGGAGAATGCCGAGAAGTATAAATTCCTGTTGCCTGGGAATTGCAAAAGAGAAAGCTAG

Protein Analysis

392

Amino Acids

46.07

Weight (kDa)

6.91

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 25 - 370 9.6e-183 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 837
AccI GTMKAC 3 cut(s) 91, 351, 777
AccII CGCG 1 cut(s) 333
AciI CCGC 5 cut(s) 115, 226, 230, 245, 331
AclWI GGATC 1 cut(s) 667
AcoI YGGCCR 2 cut(s) 76, 227
AcsI RAATTY 3 cut(s) 428, 448, 1139
AcuI CTGAAG 2 cut(s) 744, 764
AfaI GTAC 3 cut(s) 338, 804, 1040
AfiI CCNNNNNNNGG 2 cut(s) 561, 562
AgsI TTSAA 3 cut(s) 518, 620, 1048
AjnI CCWGG 3 cut(s) 78, 861, 1150
AluBI AGCT 6 cut(s) 304, 409, 602, 626, 888, 1173
AluI AGCT 6 cut(s) 304, 409, 602, 626, 888, 1173
AlwI GGATC 1 cut(s) 667
AoxI GGCC 4 cut(s) 76, 227, 795, 1069
ApaI GGGCCC 1 cut(s) 1073
ApeKI GCWGC 2 cut(s) 117, 885
ApoI RAATTY 3 cut(s) 428, 448, 1139
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
Asp700I GAANNNNTTC 1 cut(s) 729
AspLEI GCGC 2 cut(s) 65, 838
AspS9I GGNCC 3 cut(s) 795, 1069, 1070
AsuC2I CCSGG 1 cut(s) 523
AsuHPI GGTGA 1 cut(s) 234
AxyI CCTNAGG 1 cut(s) 701
BaeGI GKGCMC 2 cut(s) 294, 1073
BaeI ACNNNNGTAYC 2 cut(s) 794, 827
BalI TGGCCA 1 cut(s) 78
BanII GRGCYC 2 cut(s) 148, 1073
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 104, 897
BccI CCATC 3 cut(s) 7, 373, 393
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 3 cut(s) 80, 863, 1152
BciVI GTATCC 1 cut(s) 423
BcnI CCSGG 1 cut(s) 523
BfaI CTAG 1 cut(s) 1174
BfuI GTATCC 1 cut(s) 423
BglII AGATCT 1 cut(s) 210
BisI GCNGC 4 cut(s) 118, 227, 230, 886
BlsI GCNGC 4 cut(s) 119, 228, 231, 887
Bme1390I CCNGG 4 cut(s) 80, 523, 863, 1152
BmgT120I GGNCC 3 cut(s) 795, 1069, 1070
BmiI GGNNCC 1 cut(s) 1071
BmrFI CCNGG 4 cut(s) 80, 523, 863, 1152
BmsI GCATC 4 cut(s) 189, 336, 346, 859
BpiI GAAGAC 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 523
BsaBI GATNNNNATC 1 cut(s) 383
BsaJI CCNNGG 5 cut(s) 127, 294, 341, 521, 1151
Bsc4I CCNNNNNNNGG 2 cut(s) 561, 562
Bse21I CCTNAGG 1 cut(s) 701
Bse3DI GCAATG 1 cut(s) 880
Bse8I GATNNNNATC 1 cut(s) 383
BseBI CCWGG 3 cut(s) 80, 863, 1152
BseDI CCNNGG 5 cut(s) 127, 294, 341, 521, 1151
BseGI GGATG 7 cut(s) 15, 150, 264, 327, 551, 667, 673
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 2 cut(s) 561, 562
BseMI GCAATG 1 cut(s) 880
BseMII CTCAG 2 cut(s) 692, 813
BseRI GAGGAG 1 cut(s) 596
BseSI GKGCMC 2 cut(s) 294, 1073
BseX3I CGGCCG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 104, 897
BseYI CCCAGC 1 cut(s) 321
BsgI GTGCAG 1 cut(s) 1007
Bsh1236I CGCG 1 cut(s) 333
Bsh1285I CGRYCG 1 cut(s) 230
BshFI GGCC 4 cut(s) 78, 229, 797, 1071
BsiEI CGRYCG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 523
BslFI GGGAC 2 cut(s) 550, 578
BslI CCNNNNNNNGG 2 cut(s) 561, 562
BsmFI GGGAC 2 cut(s) 550, 578
BsmI GAATGC 2 cut(s) 120, 1129
BsnI GGCC 4 cut(s) 78, 229, 797, 1071
Bsp120I GGGCCC 1 cut(s) 1069
Bsp1286I GDGCHC 3 cut(s) 148, 294, 1073
Bsp143I GATC 4 cut(s) 210, 672, 946, 1012
Bsp19I CCATGG 1 cut(s) 294
BspACI CCGC 5 cut(s) 115, 226, 230, 245, 331
BspANI GGCC 4 cut(s) 78, 229, 797, 1071
BspCNI CTCAG 2 cut(s) 693, 812
BspFNI CGCG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 1071
BspPI GGATC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 880
BssECI CCNNGG 5 cut(s) 127, 294, 341, 521, 1151
BssMI GATC 4 cut(s) 210, 672, 946, 1012
BssT1I CCWWGG 2 cut(s) 294, 341
Bst2UI CCWGG 3 cut(s) 80, 863, 1152
Bst4CI ACNGT 3 cut(s) 541, 788, 938
Bst6I CTCTTC 2 cut(s) 483, 1029
BstDEI CTNAG 3 cut(s) 42, 701, 799
BstDSI CCRYGG 2 cut(s) 127, 294
BstF5I GGATG 7 cut(s) 15, 150, 264, 327, 551, 667, 673
BstFNI CGCG 1 cut(s) 333
BstHHI GCGC 2 cut(s) 65, 838
BstKTI GATC 4 cut(s) 213, 675, 949, 1015
BstMBI GATC 4 cut(s) 210, 672, 946, 1012
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 3 cut(s) 186, 844, 1068
BstNI CCWGG 3 cut(s) 80, 863, 1152
BstNSI RCATGY 2 cut(s) 106, 180
BstSCI CCNGG 4 cut(s) 78, 521, 861, 1150
BstSLI GKGCMC 2 cut(s) 294, 1073
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 104, 897
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 2 cut(s) 210, 672
BstYI RGATCY 2 cut(s) 210, 672
BstZI CGGCCG 1 cut(s) 227
Bsu36I CCTNAGG 1 cut(s) 701
BsuI GTATCC 1 cut(s) 423
BsuRI GGCC 4 cut(s) 78, 229, 797, 1071
BtgI CCRYGG 2 cut(s) 127, 294
BtsCI GGATG 7 cut(s) 15, 150, 264, 327, 551, 667, 673
CciI TCATGA 1 cut(s) 280
CciNI GCGGCCGC 1 cut(s) 227
CfoI GCGC 2 cut(s) 65, 838
Cfr13I GGNCC 3 cut(s) 795, 1069, 1070
Csp6I GTAC 3 cut(s) 337, 803, 1039
CviAII CATG 7 cut(s) 103, 163, 177, 200, 260, 281, 295
CviQI GTAC 3 cut(s) 337, 803, 1039
DdeI CTNAG 3 cut(s) 42, 701, 799
DpnI GATC 4 cut(s) 212, 674, 948, 1014
DpnII GATC 4 cut(s) 210, 672, 946, 1012
EaeI YGGCCR 2 cut(s) 76, 227
EagI CGGCCG 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 483, 1029
EarI CTCTTC 2 cut(s) 483, 1029
EclXI CGGCCG 1 cut(s) 227
Eco130I CCWWGG 2 cut(s) 294, 341
Eco24I GRGCYC 2 cut(s) 148, 1073
Eco32I GATATC 1 cut(s) 385
Eco52I CGGCCG 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 744, 764
Eco81I CCTNAGG 1 cut(s) 701
EcoO109I RGGNCCY 2 cut(s) 795, 1070
EcoRII CCWGG 3 cut(s) 78, 861, 1150
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 2 cut(s) 294, 341
EcoT22I ATGCAT 1 cut(s) 182
EcoT38I GRGCYC 2 cut(s) 148, 1073
ErhI CCWWGG 2 cut(s) 294, 341
FaeI CATG 7 cut(s) 106, 166, 180, 203, 263, 284, 298
FaqI GGGAC 2 cut(s) 550, 578
FatI CATG 7 cut(s) 102, 162, 176, 199, 259, 280, 294
FblI GTMKAC 3 cut(s) 91, 351, 777
Fnu4HI GCNGC 4 cut(s) 118, 227, 230, 886
FokI GGATG 7 cut(s) 22, 137, 251, 314, 538, 674, 680
FriOI GRGCYC 2 cut(s) 148, 1073
Fsp4HI GCNGC 4 cut(s) 118, 227, 230, 886
FspAI RTGCGCAY 1 cut(s) 837
FspBI CTAG 1 cut(s) 1174
FspI TGCGCA 1 cut(s) 837
GlaI GCGC 2 cut(s) 64, 837
GluI GCNGC 4 cut(s) 118, 227, 230, 886
GsaI CCCAGC 1 cut(s) 325
HaeIII GGCC 4 cut(s) 78, 229, 797, 1071
HapII CCGG 1 cut(s) 523
HhaI GCGC 2 cut(s) 65, 838
Hin1II CATG 7 cut(s) 106, 166, 180, 203, 263, 284, 298
Hin6I GCGC 2 cut(s) 63, 836
HinP1I GCGC 2 cut(s) 63, 836
HincII GTYRAC 1 cut(s) 92
HindII GTYRAC 1 cut(s) 92
HinfI GANTC 5 cut(s) 83, 111, 239, 443, 951
HpaII CCGG 1 cut(s) 523
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 5 cut(s) 92, 352, 778, 805, 1041
Hpy188I TCNGA 2 cut(s) 661, 956
Hpy188III TCNNGA 7 cut(s) 108, 281, 462, 497, 700, 815, 1031
Hpy8I GTNNAC 5 cut(s) 92, 352, 778, 805, 1041
Hpy99I CGWCG 3 cut(s) 56, 641, 644
HpyAV CCTTC 4 cut(s) 623, 772, 922, 985
HpyCH4III ACNGT 3 cut(s) 541, 788, 938
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 844, 1068
HpyF3I CTNAG 3 cut(s) 42, 701, 799
Hsp92II CATG 7 cut(s) 106, 166, 180, 203, 263, 284, 298
HspAI GCGC 2 cut(s) 63, 836
Kzo9I GATC 4 cut(s) 210, 672, 946, 1012
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 2 cut(s) 104, 897
LweI GCATC 4 cut(s) 189, 336, 346, 859
MaeI CTAG 1 cut(s) 1174
MaeIII GTNAC 3 cut(s) 240, 823, 938
MalI GATC 4 cut(s) 212, 674, 948, 1014
MboI GATC 4 cut(s) 210, 672, 946, 1012
MboII GAAGA 8 cut(s) 58, 220, 470, 558, 608, 728, 757, 1046
MflI RGATCY 2 cut(s) 210, 672
MhlI GDGCHC 3 cut(s) 148, 294, 1073
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 6 cut(s) 428, 448, 620, 903, 1139, 1156
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 3 cut(s) 120, 248, 452
MmeI TCCRAC 7 cut(s) 197, 420, 507, 523, 639, 770, 1098
MnlI CCTC 9 cut(s) 13, 20, 486, 574, 577, 696, 786, 808, 1089
Mox20I TGGCCA 1 cut(s) 78
Mph1103I ATGCAT 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 729
MscI TGGCCA 1 cut(s) 78
MseI TTAA 3 cut(s) 140, 921, 960
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 78
MspA1I CMGCKG 1 cut(s) 117
MspI CCGG 1 cut(s) 523
MspR9I CCNGG 4 cut(s) 80, 523, 863, 1152
Mva1269I GAATGC 2 cut(s) 120, 1129
MvaI CCWGG 3 cut(s) 80, 863, 1152
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 3 cut(s) 186, 844, 1068
NciI CCSGG 1 cut(s) 523
NcoI CCATGG 1 cut(s) 294
NdeII GATC 4 cut(s) 210, 672, 946, 1012
NlaIII CATG 7 cut(s) 106, 166, 180, 203, 263, 284, 298
NlaIV GGNNCC 1 cut(s) 1071
NmeAIII GCCGAG 2 cut(s) 1070, 1153
NmuCI GTSAC 3 cut(s) 240, 823, 938
NotI GCGGCCGC 1 cut(s) 227
NsbI TGCGCA 1 cut(s) 837
NsiI ATGCAT 1 cut(s) 182
NspI RCATGY 2 cut(s) 106, 180
PagI TCATGA 1 cut(s) 280
PctI GAATGC 2 cut(s) 120, 1129
PdmI GAANNNNTTC 1 cut(s) 729
PfeI GAWTC 2 cut(s) 83, 951
PkrI GCNGC 4 cut(s) 119, 228, 231, 887
PleI GAGTC 3 cut(s) 119, 247, 451
PpsI GAGTC 3 cut(s) 119, 247, 451
Psp6I CCWGG 3 cut(s) 78, 861, 1150
PspFI CCCAGC 1 cut(s) 321
PspGI CCWGG 3 cut(s) 78, 861, 1150
PspN4I GGNNCC 1 cut(s) 1071
PspOMI GGGCCC 1 cut(s) 1069
PspPI GGNCC 3 cut(s) 795, 1069, 1070
PsuI RGATCY 2 cut(s) 210, 672
RsaI GTAC 3 cut(s) 338, 804, 1040
RsaNI GTAC 3 cut(s) 337, 803, 1039
RseI CAYNNNNRTG 1 cut(s) 285
SalI GTCGAC 1 cut(s) 90
SaqAI TTAA 3 cut(s) 140, 921, 960
SatI GCNGC 4 cut(s) 118, 227, 230, 886
Sau3AI GATC 4 cut(s) 210, 672, 946, 1012
Sau96I GGNCC 3 cut(s) 795, 1069, 1070
SchI GAGTC 3 cut(s) 120, 248, 452
ScrFI CCNGG 4 cut(s) 80, 523, 863, 1152
SduI GDGCHC 3 cut(s) 148, 294, 1073
SfaNI GCATC 4 cut(s) 189, 336, 346, 859
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 6 cut(s) 428, 448, 620, 903, 1139, 1156
SsiI CCGC 5 cut(s) 115, 226, 230, 245, 331
SspMI CTAG 1 cut(s) 1174
StyD4I CCNGG 4 cut(s) 78, 521, 861, 1150
StyI CCWWGG 2 cut(s) 294, 341
TaaI ACNGT 3 cut(s) 541, 788, 938
TaqI TCGA 4 cut(s) 91, 765, 814, 949
TaqII GACCGA 1 cut(s) 65
TasI AATT 6 cut(s) 428, 448, 620, 903, 1139, 1156
TatI WGTACW 2 cut(s) 802, 1038
TauI GCSGC 2 cut(s) 229, 232
TfiI GAWTC 2 cut(s) 83, 951
Tru1I TTAA 3 cut(s) 140, 921, 960
Tru9I TTAA 3 cut(s) 140, 921, 960
TseFI GTSAC 3 cut(s) 240, 823, 938
TseI GCWGC 2 cut(s) 117, 885
Tsp45I GTSAC 3 cut(s) 240, 823, 938
TspDTI ATGAA 6 cut(s) 470, 722, 870, 904, 941, 1088
TspGWI ACGGA 2 cut(s) 116, 1020
XapI RAATTY 3 cut(s) 428, 448, 1139
XceI RCATGY 2 cut(s) 106, 180
XmiI GTMKAC 3 cut(s) 91, 351, 777
XmnI GAANNNNTTC 1 cut(s) 729
XspI CTAG 1 cut(s) 1174
Zsp2I ATGCAT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.