FvH4_7g20170

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004922
Physical Location & Seq
Reverse (-)
16443243 .. 16444453
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20170.t1

Sequence Viewer

Length: 1119 bp
ATGATGAAGAGTGAAGGAGGAGGTCCTTACTGCTCTAAGAAGACTGACGATTACTGCGCTGATGAATCAGGAAGCTTATCAATCATGTCGAGAGTTGGCTGCATTCTCCGAGGGTTTGATATAAGAGTTCTCATCGTTCTCATTTTCCTTATCCCAACATGCATCTTTGGCATATATGCGCATGGACAGAAGGTCTCATACTTGTTGCGGCCATTATGGGAATCAGCACCTAAACCCTTCCATGAAATCCCACACTATTATCATGAAAATGTGCCCATGTCTCACCTCTGCAGACTTCACGGTTGGGGCATCCGTGAGTACCCTAGACGTGTCTATGATGCTGTGTTGTTCAGTAATGAGATCGACATGCTTACACTACGATGGAAAGAGCTCTTTCCTTATGTAATCAAATTTGTTCTCCTGGAGTCAAATTCTACGTTTTCTGGCATCACCAAACCGCTGTACTTTGCAAGAAATAGGGATGTGTTCGACTTTGTCGAACCCCGGTTGGTTTATGGGAGGGTTGGAAGAACATCCAAGAAAGGAGCAAACCCATTTGTGGAAGAGGCGTATCAGAGAAGAGCATTGGACTTTCTTCTTCAAGAAGAAGCTGGTATTTCCGACGACGATTTGTTGATCATGTCTGATGTTGATGAGATTCCAAGCAGACACACTATCAACCTCCTGAGGTGGTGCGATGATATTCCTCAAGTGCTTCATCTCCGGCTCAAGAACTATCTTTACTCCTTTGAGTTTCTTGTGGACAACAAGAGTTGGAGGGCCTCAGTACATAGGTATCAAGAGAATGTGACCAAATATGCTCACTTCCGCCAGACAGATGATATCCTGGCAGATGCAGGGTGGCATTGTAGCTTTTGTTTTCGCCGAATCAGTGAGTTCATATTTAAGATGAAGGCATACAGTCACAATGATCGTATCAGATATAAAGAGTATTTGAACCCTAGAAGAATTCAGGATGTAATCTGCAAGGGAAAGGATTTGTTTGATATGCTCCCAGAAGAATACACATTCAAGGAAATCATTGGGAAAATGGGCCCTATTCCTCATTCCTACTCAGCTGTTCATCTCCCAGCCTATCTCTTGGAGAATGCAGAGTAG

Protein Analysis

373

Amino Acids

43.7

Weight (kDa)

7.21

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 39 - 372 5.1e-171 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 180
AciI CCGC 3 cut(s) 208, 458, 829
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 3 cut(s) 410, 430, 969
AfaI GTAC 3 cut(s) 320, 464, 789
AfiI CCNNNNNNNGG 1 cut(s) 559
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 3 cut(s) 602, 958, 1033
AhdI GACNNNNNGTC 1 cut(s) 191
AjiI CACGTC 1 cut(s) 329
AjnI CCWGG 2 cut(s) 420, 846
AluBI AGCT 5 cut(s) 75, 391, 611, 873, 1079
AluI AGCT 5 cut(s) 75, 391, 611, 873, 1079
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 2 cut(s) 199, 285
AoxI GGCC 3 cut(s) 209, 780, 1054
ApaI GGGCCC 1 cut(s) 1058
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 3 cut(s) 410, 430, 969
AspLEI GCGC 2 cut(s) 59, 181
AspS9I GGNCC 4 cut(s) 23, 780, 1054, 1055
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 2 cut(s) 275, 442
AvaII GGWCC 1 cut(s) 23
AxyI CCTNAGG 1 cut(s) 686
BaeGI GKGCMC 2 cut(s) 276, 1058
BaeI ACNNNNGTAYC 2 cut(s) 779, 812
BanII GRGCYC 2 cut(s) 393, 1058
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 375
BciT130I CCWGG 2 cut(s) 422, 848
BclI TGATCA 1 cut(s) 636
BcnI CCSGG 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 199, 285
BfaI CTAG 2 cut(s) 324, 963
BfmI CTRYAG 1 cut(s) 289
BisI GCNGC 2 cut(s) 100, 209
BlsI GCNGC 2 cut(s) 101, 210
Bme1390I CCNGG 3 cut(s) 422, 505, 848
Bme18I GGWCC 1 cut(s) 23
BmeRI GACNNNNNGTC 1 cut(s) 191
BmgBI CACGTC 1 cut(s) 329
BmgT120I GGNCC 4 cut(s) 23, 780, 1054, 1055
BmiI GGNNCC 1 cut(s) 1056
BmrFI CCNGG 3 cut(s) 422, 505, 848
BmsI GCATC 5 cut(s) 171, 318, 328, 456, 844
BpiI GAAGAC 1 cut(s) 47
BpmI CTGGAG 1 cut(s) 443
BpuEI CTTGAG 2 cut(s) 693, 713
BpuMI CCSGG 1 cut(s) 505
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 109, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse21I CCTNAGG 1 cut(s) 686
BseBI CCWGG 2 cut(s) 422, 848
BseDI CCNNGG 2 cut(s) 109, 503
BseGI GGATG 4 cut(s) 309, 487, 533, 982
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMII CTCAG 3 cut(s) 677, 798, 1089
BseRI GAGGAG 1 cut(s) 33
BseSI GKGCMC 2 cut(s) 276, 1058
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 1090
BshFI GGCC 3 cut(s) 211, 782, 1056
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 2 cut(s) 505, 724
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 2 cut(s) 199, 285
BsmI GAATGC 2 cut(s) 102, 1114
BsnI GGCC 3 cut(s) 211, 782, 1056
Bso31I GGTCTC 1 cut(s) 199
Bsp120I GGGCCC 1 cut(s) 1054
Bsp1286I GDGCHC 3 cut(s) 276, 393, 1058
Bsp143I GATC 3 cut(s) 360, 636, 931
BspACI CCGC 3 cut(s) 208, 458, 829
BspANI GGCC 3 cut(s) 211, 782, 1056
BspCNI CTCAG 3 cut(s) 678, 797, 1088
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 1056
BspMAI CTGCAG 1 cut(s) 293
BspQI GCTCTTC 1 cut(s) 574
BspTNI GGTCTC 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 109, 503
BssMI GATC 3 cut(s) 360, 636, 931
Bst2UI CCWGG 2 cut(s) 422, 848
Bst4CI ACNGT 2 cut(s) 302, 923
Bst6I CTCTTC 3 cut(s) 2, 558, 574
BstDEI CTNAG 4 cut(s) 36, 686, 784, 1075
BstF5I GGATG 4 cut(s) 309, 487, 533, 982
BstHHI GCGC 2 cut(s) 59, 181
BstKTI GATC 3 cut(s) 363, 639, 934
BstMAI GTCTC 2 cut(s) 199, 285
BstMBI GATC 3 cut(s) 360, 636, 931
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 2 cut(s) 422, 848
BstNSI RCATGY 2 cut(s) 162, 370
BstSCI CCNGG 3 cut(s) 420, 503, 846
BstSFI CTRYAG 1 cut(s) 289
BstSLI GKGCMC 2 cut(s) 276, 1058
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 47
Bsu36I CCTNAGG 1 cut(s) 686
BsuRI GGCC 3 cut(s) 211, 782, 1056
BtgZI GCGATG 1 cut(s) 711
BtrI CACGTC 1 cut(s) 329
BtsCI GGATG 4 cut(s) 309, 487, 533, 982
BtsIMutI CAGTG 1 cut(s) 898
CciI TCATGA 1 cut(s) 262
CfoI GCGC 2 cut(s) 59, 181
Cfr13I GGNCC 4 cut(s) 23, 780, 1054, 1055
Csp6I GTAC 3 cut(s) 319, 463, 788
CviAII CATG 8 cut(s) 85, 159, 182, 242, 263, 277, 367, 640
CviQI GTAC 3 cut(s) 319, 463, 788
DdeI CTNAG 4 cut(s) 36, 686, 784, 1075
DpnI GATC 3 cut(s) 362, 638, 933
DpnII GATC 3 cut(s) 360, 636, 931
DriI GACNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 3 cut(s) 2, 558, 574
Eam1105I GACNNNNNGTC 1 cut(s) 191
EarI CTCTTC 3 cut(s) 2, 558, 574
EciI GGCGGA 1 cut(s) 818
Ecl136II GAGCTC 1 cut(s) 391
Eco24I GRGCYC 2 cut(s) 393, 1058
Eco31I GGTCTC 1 cut(s) 199
Eco32I GATATC 1 cut(s) 844
Eco47I GGWCC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 391
Eco81I CCTNAGG 1 cut(s) 686
EcoICRI GAGCTC 1 cut(s) 391
EcoO109I RGGNCCY 3 cut(s) 23, 780, 1055
EcoRI GAATTC 1 cut(s) 969
EcoRII CCWGG 2 cut(s) 420, 846
EcoRV GATATC 1 cut(s) 844
EcoT22I ATGCAT 1 cut(s) 164
EcoT38I GRGCYC 2 cut(s) 393, 1058
FaeI CATG 8 cut(s) 88, 162, 185, 245, 266, 280, 370, 643
FatI CATG 8 cut(s) 84, 158, 181, 241, 262, 276, 366, 639
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 2 cut(s) 100, 209
FokI GGATG 4 cut(s) 296, 494, 520, 989
FriOI GRGCYC 2 cut(s) 393, 1058
Fsp4HI GCNGC 2 cut(s) 100, 209
FspAI RTGCGCAY 1 cut(s) 180
FspBI CTAG 2 cut(s) 324, 963
FspI TGCGCA 1 cut(s) 180
GlaI GCGC 2 cut(s) 58, 180
GluI GCNGC 2 cut(s) 100, 209
GsaI CCCAGC 1 cut(s) 1094
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 3 cut(s) 211, 782, 1056
HapII CCGG 2 cut(s) 505, 724
HhaI GCGC 2 cut(s) 59, 181
Hin1II CATG 8 cut(s) 88, 162, 185, 245, 266, 280, 370, 643
Hin6I GCGC 2 cut(s) 57, 179
HinP1I GCGC 2 cut(s) 57, 179
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 5 cut(s) 65, 221, 425, 658, 888
HpaII CCGG 2 cut(s) 505, 724
HphI GGTGA 2 cut(s) 275, 442
Hpy166II GTNNAC 1 cut(s) 763
Hpy188I TCNGA 5 cut(s) 110, 576, 622, 646, 941
Hpy188III TCNNGA 8 cut(s) 69, 90, 263, 602, 685, 730, 800, 974
Hpy8I GTNNAC 1 cut(s) 763
Hpy99I CGWCG 2 cut(s) 626, 629
HpyAV CCTTC 4 cut(s) 8, 184, 247, 907
HpyCH4III ACNGT 2 cut(s) 302, 923
HpyCH4IV ACGT 2 cut(s) 328, 437
HpyCH4V TGCA 7 cut(s) 102, 162, 291, 470, 857, 987, 1112
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 4 cut(s) 36, 686, 784, 1075
HpySE526I ACGT 2 cut(s) 328, 437
Hsp92II CATG 8 cut(s) 88, 162, 185, 245, 266, 280, 370, 643
HspAI GCGC 2 cut(s) 57, 179
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 3 cut(s) 360, 636, 931
LguI GCTCTTC 1 cut(s) 574
LmnI GCTCC 2 cut(s) 545, 1017
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 5 cut(s) 171, 318, 328, 456, 844
MaeI CTAG 2 cut(s) 324, 963
MaeII ACGT 2 cut(s) 328, 437
MaeIII GTNAC 2 cut(s) 808, 923
MalI GATC 3 cut(s) 362, 638, 933
MboI GATC 3 cut(s) 360, 636, 931
MhlI GDGCHC 3 cut(s) 276, 393, 1058
MluCI AATT 3 cut(s) 410, 430, 969
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 3 cut(s) 505, 645, 755
Mph1103I ATGCAT 1 cut(s) 164
MseI TTAA 1 cut(s) 906
MslI CAYNNNNRTG 2 cut(s) 267, 379
MspA1I CMGCKG 2 cut(s) 460, 1079
MspI CCGG 2 cut(s) 505, 724
MspR9I CCNGG 3 cut(s) 422, 505, 848
Mva1269I GAATGC 2 cut(s) 102, 1114
MvaI CCWGG 2 cut(s) 422, 848
MwoI GCNNNNNNNGC 1 cut(s) 168
NciI CCSGG 1 cut(s) 505
NdeII GATC 3 cut(s) 360, 636, 931
NlaIII CATG 8 cut(s) 88, 162, 185, 245, 266, 280, 370, 643
NlaIV GGNNCC 1 cut(s) 1056
NmuCI GTSAC 2 cut(s) 808, 923
NsbI TGCGCA 1 cut(s) 180
NsiI ATGCAT 1 cut(s) 164
NspI RCATGY 2 cut(s) 162, 370
PagI TCATGA 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 574
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PctI GAATGC 2 cut(s) 102, 1114
PfeI GAWTC 4 cut(s) 65, 221, 658, 888
PflFI GACNNNGTC 1 cut(s) 494
PfoI TCCNGGA 1 cut(s) 420
PkrI GCNGC 2 cut(s) 101, 210
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PpuMI RGGWCCY 1 cut(s) 23
Psp124BI GAGCTC 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 420, 846
PspFI CCCAGC 1 cut(s) 1090
PspGI CCWGG 2 cut(s) 420, 846
PspN4I GGNNCC 1 cut(s) 1056
PspOMI GGGCCC 1 cut(s) 1054
PspPI GGNCC 4 cut(s) 23, 780, 1054, 1055
PspPPI RGGWCCY 1 cut(s) 23
PsrI GAACNNNNNNTAC 2 cut(s) 725, 757
PstI CTGCAG 1 cut(s) 293
PsyI GACNNNGTC 1 cut(s) 494
PvuII CAGCTG 1 cut(s) 1079
RsaI GTAC 3 cut(s) 320, 464, 789
RsaNI GTAC 3 cut(s) 319, 463, 788
RseI CAYNNNNRTG 2 cut(s) 267, 379
SacI GAGCTC 1 cut(s) 393
SapI GCTCTTC 1 cut(s) 574
SaqAI TTAA 1 cut(s) 906
SatI GCNGC 2 cut(s) 100, 209
Sau3AI GATC 3 cut(s) 360, 636, 931
Sau96I GGNCC 4 cut(s) 23, 780, 1054, 1055
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 3 cut(s) 422, 505, 848
SduI GDGCHC 3 cut(s) 276, 393, 1058
SfaNI GCATC 5 cut(s) 171, 318, 328, 456, 844
SfcI CTRYAG 1 cut(s) 289
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 267, 379
SmlI CTYRAG 2 cut(s) 708, 728
SmoI CTYRAG 2 cut(s) 708, 728
Sse9I AATT 3 cut(s) 410, 430, 969
SsiI CCGC 3 cut(s) 208, 458, 829
SspMI CTAG 2 cut(s) 324, 963
SstI GAGCTC 1 cut(s) 393
StyD4I CCNGG 3 cut(s) 420, 503, 846
TaaI ACNGT 2 cut(s) 302, 923
TaiI ACGT 2 cut(s) 331, 440
TaqI TCGA 4 cut(s) 89, 363, 489, 498
TasI AATT 3 cut(s) 410, 430, 969
TatI WGTACW 2 cut(s) 462, 787
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 4 cut(s) 65, 221, 658, 888
Tru1I TTAA 1 cut(s) 906
Tru9I TTAA 1 cut(s) 906
TscAI CASTG 1 cut(s) 898
TseFI GTSAC 2 cut(s) 808, 923
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 2 cut(s) 808, 923
TspDTI ATGAA 8 cut(s) 20, 78, 258, 279, 707, 889, 926, 1073
TspGWI ACGGA 1 cut(s) 302
TspRI CASTG 1 cut(s) 898
Tth111I GACNNNGTC 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 3 cut(s) 410, 430, 969
XceI RCATGY 2 cut(s) 162, 370
XspI CTAG 2 cut(s) 324, 963
Zsp2I ATGCAT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.