Rh1AG321300

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004922
Physical Location & Seq
Reverse (-)
55539303 .. 55540466
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG321300.1

Sequence Viewer

Length: 1164 bp
ATGGGTGAAAGAGGAGGTCCTTACTGCTCTAAGAAGTCTAAGAAGACTGACGATTACTGCGCTGATGAATCAGGTAGACTATTAAGCACGTCAAGAGCTGGCTGCATTCTCGGTGGGTTTGATATAAGAGCTCTCATAATTCTCATTATCCTCATTCCAACCTGCATTTTTGGCATATATGCGCATGGACAGAAGGTTTCATACTTGTTGCGACCATTATGGGAATCAGCACCCAAACCTTTCCATGATATCCCACACTATTATCACGAGAATGCGTCCATGTCTCACCTCTGCAGACTTCACGGTTGGGGCATCCGCGAATACCCTAGGCGTGTATATGATGCTGTGTTGTTCAATAATGAGATAGACATCCTTACAATACGATGGAAAGAACTGTATCCTTACGTAACTAAATTTGTTCTCCTGGAGTCAAATTCAACGTTTTCTGGAATTATCAAGCCTTTGTATTTTGCAAGAAACCTGGATCAGTTCGACTTTGTTGAACCCCGGTTGGTTTATGGGAGGGTTGGAAGAACATCCAAGAAAGGAGAAAACCCATTTGTGGAAGAGGCATATCAGCGAAGAGTATTGGACTTTCTCCTCCAAGAAAAAGCTGGTATTACCGACGATGACTTGTTGATAATGTCTGATGTTGATGAGATTCCAAGCAGACACACTATCAATCTCCTGAGGTGGTGTGATGATATTCCTCAAGTTCTTCATCTTCGGCTGAAGAACTATCTTTATTCCTTCGAGTTTCTTGTGGACAACAACAGTTGGAGGGCCTCAGTACACAGGTATCAAGAGAATGTGACCAAATATGCACACTTTCGCCAGACAGATGATATCCTGGCAGATGCAGGGTGGCATTGCAGCTTTTGTTTTCGCAGAATCAGTGAGTTCATATTTAAGATGAAGGCATACAGTCACAATGATCGTATCAGATTTAACAAGTATCTAAACCCCAAAAGAGTTCGGGATGTAATCTGCAAGGGAGCCGATTTGTTTGACATGCTTCCAGAAGAGTACACATTCAGGGAAATCATTGGCAAAATGGGCCCTATTCCTCATTCCTACTCAGCTGTTCATCTCCCAGCATATCTATTGGAGAATGCAGACAAGTATAAATTCCTGTTGCCTGGGAATTGCGAAAGGCAAAGCTAG

Protein Analysis

387

Amino Acids

45.34

Weight (kDa)

8.4

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 41 - 386 1.6e-179 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 183
Acc36I ACCTGC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 76
AccII CGCG 1 cut(s) 318
AciI CCGC 1 cut(s) 316
AclI AACGTT 1 cut(s) 440
AclWI GGATC 1 cut(s) 492
AcsI RAATTY 3 cut(s) 413, 433, 1127
AcuI CTGAAG 1 cut(s) 752
AfaI GTAC 2 cut(s) 792, 1028
AfiI CCNNNNNNNGG 1 cut(s) 562
AgsI TTSAA 3 cut(s) 355, 438, 503
AjiI CACGTC 1 cut(s) 90
AjnI CCWGG 4 cut(s) 423, 480, 849, 1138
AluBI AGCT 6 cut(s) 98, 131, 614, 876, 1082, 1161
AluI AGCT 6 cut(s) 98, 131, 614, 876, 1082, 1161
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 1 cut(s) 492
AoxI GGCC 2 cut(s) 783, 1057
ApaI GGGCCC 1 cut(s) 1061
ApeKI GCWGC 2 cut(s) 102, 873
ApoI RAATTY 3 cut(s) 413, 433, 1127
AspA2I CCTAGG 1 cut(s) 326
AspLEI GCGC 2 cut(s) 62, 184
AspS9I GGNCC 4 cut(s) 17, 783, 1057, 1058
AsuC2I CCSGG 1 cut(s) 508
AsuHPI GGTGA 2 cut(s) 17, 278
AvaII GGWCC 1 cut(s) 17
AvrII CCTAGG 1 cut(s) 326
AxyI CCTNAGG 1 cut(s) 689
BaeGI GKGCMC 1 cut(s) 1061
BaeI ACNNNNGTAYC 2 cut(s) 782, 815
BanII GRGCYC 2 cut(s) 133, 1061
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BauI CACGAG 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 89, 885
BccI CCATC 1 cut(s) 378
BciT130I CCWGG 4 cut(s) 425, 482, 851, 1140
BciVI GTATCC 1 cut(s) 408
BcnI CCSGG 1 cut(s) 508
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 2 cut(s) 327, 1162
BfmI CTRYAG 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 170
BfuI GTATCC 1 cut(s) 408
BisI GCNGC 2 cut(s) 103, 874
BlnI CCTAGG 1 cut(s) 326
BlsI GCNGC 2 cut(s) 104, 875
Bme1390I CCNGG 5 cut(s) 425, 482, 508, 851, 1140
Bme18I GGWCC 1 cut(s) 17
BmgBI CACGTC 1 cut(s) 90
BmgT120I GGNCC 4 cut(s) 17, 783, 1057, 1058
BmiI GGNNCC 2 cut(s) 997, 1059
BmrFI CCNGG 5 cut(s) 425, 482, 508, 851, 1140
BmsI GCATC 3 cut(s) 321, 331, 847
BpiI GAAGAC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 696
BpuMI CCSGG 1 cut(s) 508
BsaAI YACGTR 1 cut(s) 406
BsaBI GATNNNNATC 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 326, 506, 1139
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse21I CCTNAGG 1 cut(s) 689
Bse3DI GCAATG 1 cut(s) 868
Bse8I GATNNNNATC 1 cut(s) 368
BseBI CCWGG 4 cut(s) 425, 482, 851, 1140
BseDI CCNNGG 3 cut(s) 326, 506, 1139
BseGI GGATG 4 cut(s) 312, 369, 536, 985
BseJI GATNNNNATC 1 cut(s) 368
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMI GCAATG 1 cut(s) 868
BseMII CTCAG 3 cut(s) 680, 801, 1092
BseRI GAGGAG 2 cut(s) 27, 590
BseSI GKGCMC 1 cut(s) 1061
BseXI GCAGC 2 cut(s) 89, 885
BseYI CCCAGC 1 cut(s) 1093
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 2 cut(s) 785, 1059
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 508
BslI CCNNNNNNNGG 1 cut(s) 562
BsmAI GTCTC 1 cut(s) 288
BsmI GAATGC 3 cut(s) 105, 277, 1117
BsnI GGCC 2 cut(s) 785, 1059
Bsp120I GGGCCC 1 cut(s) 1057
Bsp1286I GDGCHC 2 cut(s) 133, 1061
Bsp143I GATC 2 cut(s) 484, 934
BspACI CCGC 1 cut(s) 316
BspANI GGCC 2 cut(s) 785, 1059
BspCNI CTCAG 3 cut(s) 681, 800, 1091
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 997, 1059
BspMAI CTGCAG 1 cut(s) 296
BspMI ACCTGC 1 cut(s) 170
BspPI GGATC 1 cut(s) 492
BsrDI GCAATG 1 cut(s) 868
BssECI CCNNGG 3 cut(s) 326, 506, 1139
BssMI GATC 2 cut(s) 484, 934
BssSI CACGAG 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 326
Bst2BI CACGAG 1 cut(s) 266
Bst2UI CCWGG 4 cut(s) 425, 482, 851, 1140
Bst4CI ACNGT 4 cut(s) 305, 396, 776, 926
Bst6I CTCTTC 3 cut(s) 561, 577, 1017
BstBAI YACGTR 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 5 cut(s) 30, 39, 689, 787, 1078
BstF5I GGATG 4 cut(s) 312, 369, 536, 985
BstFNI CGCG 1 cut(s) 318
BstHHI GCGC 2 cut(s) 62, 184
BstKTI GATC 2 cut(s) 487, 937
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 2 cut(s) 484, 934
BstMWI GCNNNNNNNGC 2 cut(s) 171, 1056
BstNI CCWGG 4 cut(s) 425, 482, 851, 1140
BstNSI RCATGY 1 cut(s) 1015
BstSCI CCNGG 5 cut(s) 423, 480, 506, 849, 1138
BstSFI CTRYAG 1 cut(s) 292
BstSLI GKGCMC 1 cut(s) 1061
BstSNI TACGTA 1 cut(s) 406
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 2 cut(s) 89, 885
BstV2I GAAGAC 1 cut(s) 50
Bsu36I CCTNAGG 1 cut(s) 689
BsuI GTATCC 1 cut(s) 408
BsuRI GGCC 2 cut(s) 785, 1059
BtrI CACGTC 1 cut(s) 90
BtsCI GGATG 4 cut(s) 312, 369, 536, 985
BtsIMutI CAGTG 1 cut(s) 901
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 2 cut(s) 62, 184
Cfr13I GGNCC 4 cut(s) 17, 783, 1057, 1058
CseI GACGC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 791, 1027
CviAII CATG 4 cut(s) 185, 245, 280, 1012
CviQI GTAC 2 cut(s) 791, 1027
DdeI CTNAG 5 cut(s) 30, 39, 689, 787, 1078
DpnI GATC 2 cut(s) 486, 936
DpnII GATC 2 cut(s) 484, 934
Eam1104I CTCTTC 3 cut(s) 561, 577, 1017
EarI CTCTTC 3 cut(s) 561, 577, 1017
Ecl136II GAGCTC 1 cut(s) 131
Eco105I TACGTA 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 326
Eco24I GRGCYC 2 cut(s) 133, 1061
Eco32I GATATC 2 cut(s) 250, 847
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 752
Eco81I CCTNAGG 1 cut(s) 689
EcoICRI GAGCTC 1 cut(s) 131
EcoO109I RGGNCCY 3 cut(s) 17, 783, 1058
EcoRII CCWGG 4 cut(s) 423, 480, 849, 1138
EcoRV GATATC 2 cut(s) 250, 847
EcoT14I CCWWGG 1 cut(s) 326
EcoT38I GRGCYC 2 cut(s) 133, 1061
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 4 cut(s) 188, 248, 283, 1015
FatI CATG 4 cut(s) 184, 244, 279, 1011
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 103, 874
FokI GGATG 4 cut(s) 299, 356, 523, 992
FriOI GRGCYC 2 cut(s) 133, 1061
Fsp4HI GCNGC 2 cut(s) 103, 874
FspAI RTGCGCAY 1 cut(s) 183
FspBI CTAG 2 cut(s) 327, 1162
FspI TGCGCA 1 cut(s) 183
GlaI GCGC 2 cut(s) 61, 183
GluI GCNGC 2 cut(s) 103, 874
GsaI CCCAGC 1 cut(s) 1097
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 2 cut(s) 785, 1059
HapII CCGG 1 cut(s) 508
HgaI GACGC 1 cut(s) 264
HhaI GCGC 2 cut(s) 62, 184
Hin1II CATG 4 cut(s) 188, 248, 283, 1015
Hin6I GCGC 2 cut(s) 60, 182
HinP1I GCGC 2 cut(s) 60, 182
HinfI GANTC 5 cut(s) 68, 224, 428, 661, 891
HpaII CCGG 1 cut(s) 508
HphI GGTGA 2 cut(s) 17, 278
Hpy166II GTNNAC 4 cut(s) 77, 766, 793, 1029
Hpy188I TCNGA 2 cut(s) 649, 944
Hpy188III TCNNGA 7 cut(s) 93, 266, 447, 688, 803, 977, 1019
Hpy8I GTNNAC 4 cut(s) 77, 766, 793, 1029
Hpy99I CGWCG 1 cut(s) 629
HpyAV CCTTC 3 cut(s) 187, 760, 910
HpyCH4III ACNGT 4 cut(s) 305, 396, 776, 926
HpyCH4IV ACGT 3 cut(s) 89, 405, 440
HpyCH4V TGCA 9 cut(s) 105, 165, 294, 473, 824, 860, 873, 990, 1115
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 1056
HpyF3I CTNAG 5 cut(s) 30, 39, 689, 787, 1078
HpySE526I ACGT 3 cut(s) 89, 405, 440
Hsp92II CATG 4 cut(s) 188, 248, 283, 1015
HspAI GCGC 2 cut(s) 60, 182
Kzo9I GATC 2 cut(s) 484, 934
LmnI GCTCC 1 cut(s) 995
Lsp1109I GCAGC 2 cut(s) 89, 885
LweI GCATC 3 cut(s) 321, 331, 847
MaeI CTAG 2 cut(s) 327, 1162
MaeII ACGT 3 cut(s) 89, 405, 440
MaeIII GTNAC 3 cut(s) 406, 811, 926
MalI GATC 2 cut(s) 486, 936
MboI GATC 2 cut(s) 484, 934
MboII GAAGA 8 cut(s) 55, 543, 578, 594, 710, 716, 745, 1034
MhlI GDGCHC 2 cut(s) 133, 1061
MluCI AATT 6 cut(s) 138, 413, 433, 450, 1127, 1144
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 3 cut(s) 182, 508, 758
MseI TTAA 3 cut(s) 83, 909, 948
MslI CAYNNNNRTG 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 1082
MspI CCGG 1 cut(s) 508
MspR9I CCNGG 5 cut(s) 425, 482, 508, 851, 1140
Mva1269I GAATGC 3 cut(s) 105, 277, 1117
MvaI CCWGG 4 cut(s) 425, 482, 851, 1140
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 171, 1056
NciI CCSGG 1 cut(s) 508
NdeII GATC 2 cut(s) 484, 934
NlaIII CATG 4 cut(s) 188, 248, 283, 1015
NlaIV GGNNCC 2 cut(s) 997, 1059
NmuCI GTSAC 2 cut(s) 811, 926
NsbI TGCGCA 1 cut(s) 183
NspI RCATGY 1 cut(s) 1015
PctI GAATGC 3 cut(s) 105, 277, 1117
PfeI GAWTC 4 cut(s) 68, 224, 661, 891
PfoI TCCNGGA 1 cut(s) 423
PkrI GCNGC 2 cut(s) 104, 875
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 133
Psp1406I AACGTT 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 4 cut(s) 423, 480, 849, 1138
PspFI CCCAGC 1 cut(s) 1093
PspGI CCWGG 4 cut(s) 423, 480, 849, 1138
PspN4I GGNNCC 2 cut(s) 997, 1059
PspOMI GGGCCC 1 cut(s) 1057
PspPI GGNCC 4 cut(s) 17, 783, 1057, 1058
PspPPI RGGWCCY 1 cut(s) 17
PstI CTGCAG 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 1082
RsaI GTAC 2 cut(s) 792, 1028
RsaNI GTAC 2 cut(s) 791, 1027
RseI CAYNNNNRTG 1 cut(s) 270
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 3 cut(s) 83, 909, 948
SatI GCNGC 2 cut(s) 103, 874
Sau3AI GATC 2 cut(s) 484, 934
Sau96I GGNCC 4 cut(s) 17, 783, 1057, 1058
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 5 cut(s) 425, 482, 508, 851, 1140
SduI GDGCHC 2 cut(s) 133, 1061
SfaNI GCATC 3 cut(s) 321, 331, 847
SfcI CTRYAG 1 cut(s) 292
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 711
SmoI CTYRAG 1 cut(s) 711
SnaBI TACGTA 1 cut(s) 406
Sse9I AATT 6 cut(s) 138, 413, 433, 450, 1127, 1144
SsiI CCGC 1 cut(s) 316
SspMI CTAG 2 cut(s) 327, 1162
SstI GAGCTC 1 cut(s) 133
StyD4I CCNGG 5 cut(s) 423, 480, 506, 849, 1138
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 4 cut(s) 305, 396, 776, 926
TaiI ACGT 3 cut(s) 92, 408, 443
TaqI TCGA 2 cut(s) 492, 753
TasI AATT 6 cut(s) 138, 413, 433, 450, 1127, 1144
TatI WGTACW 2 cut(s) 790, 1026
TfiI GAWTC 4 cut(s) 68, 224, 661, 891
Tru1I TTAA 3 cut(s) 83, 909, 948
Tru9I TTAA 3 cut(s) 83, 909, 948
TscAI CASTG 1 cut(s) 901
TseFI GTSAC 2 cut(s) 811, 926
TseI GCWGC 2 cut(s) 102, 873
Tsp45I GTSAC 2 cut(s) 811, 926
TspDTI ATGAA 6 cut(s) 81, 189, 710, 892, 929, 1076
TspRI CASTG 1 cut(s) 901
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 3 cut(s) 413, 433, 1127
XceI RCATGY 1 cut(s) 1015
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XmaJI CCTAGG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 76
XspI CTAG 2 cut(s) 327, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.