RLG00000027513

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004922
Physical Location & Seq
Forward (+)
12333682 .. 12334815
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027513

Sequence Viewer

Length: 1134 bp
ATGGGTGAAAGAGGAGGTCCTTACTGCTCTAAGAATTCTAAGAAGACTGACGATTACTGCGCTGATGAATCAGGTAGACTATTAAGCACGTCAAGAGCTGGCTGCATTCTCGGTGGGTTTGATTTAAGAGCTCTCATAATTCTCATTATCCTCATTCCAACCTGCATTTTTGGCATATATGCTGGACAGAAGGTTTCATACTTGTTGCGACCATTATGGGAATCTGCACCCAAACCTTTCCATGATATCCCACACTATTATCACGAGAATGCGTCCATGTCTCACCTCTGCAGACTTCACGGTTGGGGCATCCGCGAGTACCCTAGGCGTGTATATGATGCTGTGTTGTTCAATAATGAGATAGACATCCTTACAATACGATGGAAAGAACTGTATCCTTACGTAAATAAATTTGTTCTCCTGGAGTCAAATTCAACATTTTCTGGAATTATCAAGCCATTGTATTTTGCAAGAAACCGGGATCAGTTCGACTTTGTTGAACCTCGGTTGGTTTATGGGAGGGTTGGAAGAACATCCAAGAAAGGAGAAAACCCATTTGTGGAGGAGGCATATCAGCGAAGAGCATTGGACTTTCTTCTCCGAGTAAAAGCTGGTATTACCGACGATGACTTGTTGATAATGTCTGATGTTGATGAGATCCCAAGAAGACACACTATCAATCTCCTGAGGTGGTGTGATGATATTCCTCAAGTTCTTCATCTTCGGCTGAAGAACTATCTTTATTCGTTTGAGTTTCTTGTGGACAACAACAGTTGGAGGGCCTCCGTACACAGGTCTCAAGAGAATGTGACCAAAATCACCAAATATGCTCACTTCCGCCAGACAGATAATATCCTGGCAGATGCAGGGTGGCATTGCAGCTTTTGTTTTCTCAAAATCAGTGAGTTCATATTTAAGATGAAGGCATACAGTCACAATGATCGTATCAGATTTAACAAGTATCTAAACCCTAAAAGAGTTCAGGATGTAATCTGCAAGGGGGACGATTTGTTTGACATGCTTCCAGAAGAGTACACATTTCAAGGAAATCATTGGCAAAATGGGCCCTATTCCTCATTCCTACTCAGCTGTTCATCTCCCAGCCCATCTGTTGGAGAATGCAGACGAGTATAA

Protein Analysis

378

Amino Acids

44.02

Weight (kDa)

8.64

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 42 - 349 1.7e-152 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 1112
AccI GTMKAC 1 cut(s) 76
AccII CGCG 1 cut(s) 315
AciI CCGC 2 cut(s) 313, 838
AclWI GGATC 2 cut(s) 489, 652
AcsI RAATTY 3 cut(s) 34, 410, 430
AcuI CTGAAG 1 cut(s) 749
AfaI GTAC 3 cut(s) 320, 789, 1034
AfiI CCNNNNNNNGG 3 cut(s) 559, 792, 1112
AgsI TTSAA 4 cut(s) 352, 435, 500, 1043
AjiI CACGTC 1 cut(s) 90
AjnI CCWGG 2 cut(s) 420, 855
AluBI AGCT 5 cut(s) 98, 131, 611, 882, 1089
AluI AGCT 5 cut(s) 98, 131, 611, 882, 1089
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 285, 801
AlwI GGATC 2 cut(s) 489, 652
AoxI GGCC 2 cut(s) 780, 1064
ApaI GGGCCC 1 cut(s) 1068
ApeKI GCWGC 2 cut(s) 102, 879
ApoI RAATTY 3 cut(s) 34, 410, 430
ArsI GACNNNNNNTTYG 2 cut(s) 995, 1027
AspA2I CCTAGG 1 cut(s) 323
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 4 cut(s) 17, 780, 1064, 1065
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 3 cut(s) 17, 275, 811
AvaII GGWCC 1 cut(s) 17
AvrII CCTAGG 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 686
BaeGI GKGCMC 1 cut(s) 1068
BanII GRGCYC 2 cut(s) 133, 1068
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BauI CACGAG 1 cut(s) 263
BbsI GAAGAC 2 cut(s) 50, 673
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 89, 891
BccI CCATC 2 cut(s) 375, 1114
BciT130I CCWGG 2 cut(s) 422, 857
BciVI GTATCC 1 cut(s) 405
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 2 cut(s) 285, 801
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 289
BfuAI ACCTGC 1 cut(s) 170
BfuI GTATCC 1 cut(s) 405
BisI GCNGC 2 cut(s) 103, 880
BlnI CCTAGG 1 cut(s) 323
BlsI GCNGC 2 cut(s) 104, 881
Bme1390I CCNGG 3 cut(s) 422, 479, 857
Bme18I GGWCC 1 cut(s) 17
BmgBI CACGTC 1 cut(s) 90
BmgT120I GGNCC 4 cut(s) 17, 780, 1064, 1065
BmiI GGNNCC 1 cut(s) 1066
BmrFI CCNGG 3 cut(s) 422, 479, 857
BmsI GCATC 3 cut(s) 318, 328, 853
BpiI GAAGAC 2 cut(s) 50, 673
BpmI CTGGAG 1 cut(s) 443
BpuEI CTTGAG 2 cut(s) 693, 783
BpuMI CCSGG 1 cut(s) 479
BsaAI YACGTR 1 cut(s) 403
BsaBI GATNNNNATC 1 cut(s) 365
BsaI GGTCTC 1 cut(s) 801
BsaJI CCNNGG 2 cut(s) 323, 503
Bsc4I CCNNNNNNNGG 3 cut(s) 559, 792, 1112
Bse21I CCTNAGG 1 cut(s) 686
Bse3DI GCAATG 1 cut(s) 874
Bse8I GATNNNNATC 1 cut(s) 365
BseBI CCWGG 2 cut(s) 422, 857
BseDI CCNNGG 2 cut(s) 323, 503
BseGI GGATG 4 cut(s) 309, 366, 533, 991
BseJI GATNNNNATC 1 cut(s) 365
BseLI CCNNNNNNNGG 3 cut(s) 559, 792, 1112
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 2 cut(s) 677, 1099
BseRI GAGGAG 2 cut(s) 27, 578
BseSI GKGCMC 1 cut(s) 1068
BseXI GCAGC 2 cut(s) 89, 891
BseYI CCCAGC 1 cut(s) 1100
BsgI GTGCAG 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 2 cut(s) 782, 1066
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 478
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 3 cut(s) 559, 792, 1112
BsmAI GTCTC 2 cut(s) 285, 801
BsmFI GGGAC 1 cut(s) 1016
BsmI GAATGC 3 cut(s) 105, 274, 1124
BsnI GGCC 2 cut(s) 782, 1066
Bso31I GGTCTC 1 cut(s) 801
Bsp120I GGGCCC 1 cut(s) 1064
Bsp1286I GDGCHC 2 cut(s) 133, 1068
Bsp143I GATC 3 cut(s) 481, 657, 940
BspACI CCGC 2 cut(s) 313, 838
BspANI GGCC 2 cut(s) 782, 1066
BspCNI CTCAG 2 cut(s) 678, 1098
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 1066
BspMAI CTGCAG 1 cut(s) 293
BspMI ACCTGC 1 cut(s) 170
BspPI GGATC 2 cut(s) 489, 652
BspQI GCTCTTC 1 cut(s) 574
BspTNI GGTCTC 1 cut(s) 801
BsrDI GCAATG 1 cut(s) 874
BssECI CCNNGG 2 cut(s) 323, 503
BssMI GATC 3 cut(s) 481, 657, 940
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 323
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 2 cut(s) 422, 857
Bst4CI ACNGT 4 cut(s) 302, 393, 773, 932
Bst6I CTCTTC 2 cut(s) 574, 1023
BstBAI YACGTR 1 cut(s) 403
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 4 cut(s) 30, 39, 686, 1085
BstF5I GGATG 4 cut(s) 309, 366, 533, 991
BstFNI CGCG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 3 cut(s) 484, 660, 943
BstMAI GTCTC 2 cut(s) 285, 801
BstMBI GATC 3 cut(s) 481, 657, 940
BstMWI GCNNNNNNNGC 2 cut(s) 171, 1063
BstNI CCWGG 2 cut(s) 422, 857
BstNSI RCATGY 1 cut(s) 1021
BstSCI CCNGG 3 cut(s) 420, 477, 855
BstSFI CTRYAG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 1068
BstSNI TACGTA 1 cut(s) 403
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 89, 891
BstV2I GAAGAC 2 cut(s) 50, 673
BstX2I RGATCY 1 cut(s) 657
BstYI RGATCY 1 cut(s) 657
Bsu36I CCTNAGG 1 cut(s) 686
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 2 cut(s) 782, 1066
BtrI CACGTC 1 cut(s) 90
BtsCI GGATG 4 cut(s) 309, 366, 533, 991
BtsIMutI CAGTG 1 cut(s) 907
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 4 cut(s) 17, 780, 1064, 1065
CseI GACGC 1 cut(s) 261
Csp6I GTAC 3 cut(s) 319, 788, 1033
CviAII CATG 3 cut(s) 242, 277, 1018
CviQI GTAC 3 cut(s) 319, 788, 1033
DdeI CTNAG 4 cut(s) 30, 39, 686, 1085
DpnI GATC 3 cut(s) 483, 659, 942
DpnII GATC 3 cut(s) 481, 657, 940
Eam1104I CTCTTC 2 cut(s) 574, 1023
EarI CTCTTC 2 cut(s) 574, 1023
EciI GGCGGA 1 cut(s) 827
Ecl136II GAGCTC 1 cut(s) 131
Eco105I TACGTA 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 2 cut(s) 133, 1068
Eco31I GGTCTC 1 cut(s) 801
Eco32I GATATC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 749
Eco81I CCTNAGG 1 cut(s) 686
EcoICRI GAGCTC 1 cut(s) 131
EcoO109I RGGNCCY 3 cut(s) 17, 780, 1065
EcoRI GAATTC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 420, 855
EcoRV GATATC 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 2 cut(s) 133, 1068
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 3 cut(s) 245, 280, 1021
FaqI GGGAC 1 cut(s) 1016
FatI CATG 3 cut(s) 241, 276, 1017
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 103, 880
FokI GGATG 4 cut(s) 296, 353, 520, 998
FriOI GRGCYC 2 cut(s) 133, 1068
Fsp4HI GCNGC 2 cut(s) 103, 880
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 61
GluI GCNGC 2 cut(s) 103, 880
GsaI CCCAGC 1 cut(s) 1104
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 2 cut(s) 782, 1066
HapII CCGG 1 cut(s) 478
HgaI GACGC 1 cut(s) 261
HhaI GCGC 1 cut(s) 62
Hin1II CATG 3 cut(s) 245, 280, 1021
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 3 cut(s) 68, 221, 425
HpaII CCGG 1 cut(s) 478
HphI GGTGA 3 cut(s) 17, 275, 811
Hpy166II GTNNAC 4 cut(s) 77, 763, 790, 1035
Hpy188I TCNGA 3 cut(s) 602, 646, 950
Hpy188III TCNNGA 7 cut(s) 93, 263, 444, 685, 800, 983, 1025
Hpy8I GTNNAC 4 cut(s) 77, 763, 790, 1035
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 2 cut(s) 184, 916
HpyCH4III ACNGT 4 cut(s) 302, 393, 773, 932
HpyCH4IV ACGT 2 cut(s) 89, 402
HpyCH4V TGCA 9 cut(s) 105, 165, 227, 291, 470, 866, 879, 996, 1122
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 1063
HpyF3I CTNAG 4 cut(s) 30, 39, 686, 1085
HpySE526I ACGT 2 cut(s) 89, 402
Hsp92II CATG 3 cut(s) 245, 280, 1021
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 3 cut(s) 481, 657, 940
LguI GCTCTTC 1 cut(s) 574
Lsp1109I GCAGC 2 cut(s) 89, 891
LweI GCATC 3 cut(s) 318, 328, 853
MaeI CTAG 1 cut(s) 324
MaeII ACGT 2 cut(s) 89, 402
MaeIII GTNAC 2 cut(s) 808, 932
MalI GATC 3 cut(s) 483, 659, 942
MboI GATC 3 cut(s) 481, 657, 940
MboII GAAGA 9 cut(s) 55, 540, 587, 591, 678, 707, 713, 742, 1040
MflI RGATCY 1 cut(s) 657
MhlI GDGCHC 2 cut(s) 133, 1068
MluCI AATT 5 cut(s) 34, 138, 410, 430, 447
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 4 cut(s) 182, 505, 755, 1093
MseI TTAA 4 cut(s) 83, 125, 915, 954
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 1089
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 3 cut(s) 422, 479, 857
Mva1269I GAATGC 3 cut(s) 105, 274, 1124
MvaI CCWGG 2 cut(s) 422, 857
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 171, 1063
NciI CCSGG 1 cut(s) 479
NdeII GATC 3 cut(s) 481, 657, 940
NlaIII CATG 3 cut(s) 245, 280, 1021
NlaIV GGNNCC 1 cut(s) 1066
NmuCI GTSAC 2 cut(s) 808, 932
NspI RCATGY 1 cut(s) 1021
PciSI GCTCTTC 1 cut(s) 574
PctI GAATGC 3 cut(s) 105, 274, 1124
PfeI GAWTC 2 cut(s) 68, 221
PflMI CCANNNNNTGG 1 cut(s) 1112
PfoI TCCNGGA 1 cut(s) 420
PkrI GCNGC 2 cut(s) 104, 881
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Ppu21I YACGTR 1 cut(s) 403
PpuMI RGGWCCY 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 420, 855
PspFI CCCAGC 1 cut(s) 1100
PspGI CCWGG 2 cut(s) 420, 855
PspN4I GGNNCC 1 cut(s) 1066
PspOMI GGGCCC 1 cut(s) 1064
PspPI GGNCC 4 cut(s) 17, 780, 1064, 1065
PspPPI RGGWCCY 1 cut(s) 17
PstI CTGCAG 1 cut(s) 293
PsuI RGATCY 1 cut(s) 657
PvuII CAGCTG 1 cut(s) 1089
RsaI GTAC 3 cut(s) 320, 789, 1034
RsaNI GTAC 3 cut(s) 319, 788, 1033
RseI CAYNNNNRTG 1 cut(s) 267
SacI GAGCTC 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 574
SaqAI TTAA 4 cut(s) 83, 125, 915, 954
SatI GCNGC 2 cut(s) 103, 880
Sau3AI GATC 3 cut(s) 481, 657, 940
Sau96I GGNCC 4 cut(s) 17, 780, 1064, 1065
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 3 cut(s) 422, 479, 857
SduI GDGCHC 2 cut(s) 133, 1068
SfaNI GCATC 3 cut(s) 318, 328, 853
SfcI CTRYAG 1 cut(s) 289
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 708, 798
SmoI CTYRAG 2 cut(s) 708, 798
SnaBI TACGTA 1 cut(s) 403
Sse9I AATT 5 cut(s) 34, 138, 410, 430, 447
SsiI CCGC 2 cut(s) 313, 838
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 133
StyD4I CCNGG 3 cut(s) 420, 477, 855
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 4 cut(s) 302, 393, 773, 932
TaiI ACGT 2 cut(s) 92, 405
TaqI TCGA 1 cut(s) 489
TasI AATT 5 cut(s) 34, 138, 410, 430, 447
TatI WGTACW 1 cut(s) 1032
TfiI GAWTC 2 cut(s) 68, 221
Tru1I TTAA 4 cut(s) 83, 125, 915, 954
Tru9I TTAA 4 cut(s) 83, 125, 915, 954
TscAI CASTG 1 cut(s) 907
TseFI GTSAC 2 cut(s) 808, 932
TseI GCWGC 2 cut(s) 102, 879
Tsp45I GTSAC 2 cut(s) 808, 932
TspDTI ATGAA 6 cut(s) 81, 186, 707, 898, 935, 1083
TspGWI ACGGA 1 cut(s) 775
TspRI CASTG 1 cut(s) 907
Van91I CCANNNNNTGG 1 cut(s) 1112
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 3 cut(s) 34, 410, 430
XceI RCATGY 1 cut(s) 1021
XmaJI CCTAGG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 76
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.