Rroxscaffold_4G00292610

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004922
Physical Location & Seq
Forward (+)
12874632 .. 12875792
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292610.1

Sequence Viewer

Length: 1161 bp
ATGATGGGTGAAAGAGGAGGTCTTTACTGCTCTAAGAATTCTAAGAAGACTGACGTTTACTGCGCTGATGAATCAGGTAGACTATTAAGCACGTCAAGAGCTGGCTGCATTCTCGGTGGGTTTGATATAAGAGCTCTCAAAATTCTCATTATCCTCATCCCAACCTGCATTTTTGGCATATATGCGCATGGACAGAAGGTATCATACTTGTTGCGACCATTATGGGAATCAGCACCCAAACCTTTCCATGAAATCCCACACTATTATCACGAGAATGCGTCCATGTCTCACCTCTGCAGACTTCACGGTTGGGGCATCCGCGAGTACCGTAGGCGTGTATATGATGCTGTGTTGTTCAATAATGAGATAGACATCCTTACAATACGATGGAAAGAACTGTATCCTTACGTAACTAAATTTGTTCTCCTGGAGTCAAATTCAACGTTTTCTGGAATCATCAAGCCATTGTATTTTGCGAGAAACCGGGATCAGTTCGATTTTGTTGAACCCCGGTTGGTTTATGGGAGGGTTGGAAGAACATCCAAGAAAGGAGAAAACCCATTTGTTGAGGAGACATATCAGCGAAGAGTATTGGACTTTCTCCTCCAAGAAAAAGCTGGTATTACCGACGATGACTTGTTGATAATGTCGGATGTTGATGAGATCCCAAGCAGACACACTATCAATCTCCTGAGGTGGTGTGATGATATTCCTCAAGTTCTTCATCTTCGGCTGAAGAACTATCTCTATTCCTTCGAGTTTCTTGTGGACAACAACAGTTGGAGGGCCTCAGTACACAGGTATCAAGAGAATGTGACCAAATATGCTCATTTTCGCCAGACAGATGGTATCCTGGCAGATGCAGGGTGGCATTGCAGCTTTTGTTTTCGCAGAATCAGTGAGTTCATATTTAAGATGAAGGCATACAGTCACAATGATCGTATTAACAAGTATCTAAACCCTAAAAGAGTTCAGGATGTAATCTGCAAGGGAGACGATTTGTTTGATATGCTTCCAGAAGAGTACACATTCAAGGAAATCATTGGCAAAATGGGCCCTATTCCTCATTCCTACTCAGCTGTTCATCTCCCAGCATATCTATTGGAGAATGCAGACAGGTATAAACTCCTGTTGCCTGGGAATTGCGAAAGGCAAAGCTAG

Protein Analysis

386

Amino Acids

45.24

Weight (kDa)

8.54

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 43 - 385 5.1e-176 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 79
AccII CGCG 1 cut(s) 321
AciI CCGC 1 cut(s) 319
AclI AACGTT 1 cut(s) 443
AclWI GGATC 2 cut(s) 495, 658
AcsI RAATTY 4 cut(s) 37, 141, 416, 436
AcuI CTGAAG 1 cut(s) 755
AfaI GTAC 3 cut(s) 326, 795, 1025
AgsI TTSAA 4 cut(s) 358, 441, 506, 1033
AjiI CACGTC 1 cut(s) 93
AjnI CCWGG 3 cut(s) 426, 852, 1135
AluBI AGCT 6 cut(s) 101, 134, 617, 879, 1079, 1158
AluI AGCT 6 cut(s) 101, 134, 617, 879, 1079, 1158
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 3 cut(s) 291, 566, 987
AlwI GGATC 2 cut(s) 495, 658
AoxI GGCC 2 cut(s) 786, 1054
ApaI GGGCCC 1 cut(s) 1058
ApeKI GCWGC 2 cut(s) 105, 876
ApoI RAATTY 4 cut(s) 37, 141, 416, 436
ArsI GACNNNNNNTTYG 2 cut(s) 986, 1018
AspLEI GCGC 2 cut(s) 65, 187
AspS9I GGNCC 3 cut(s) 786, 1054, 1055
AsuC2I CCSGG 2 cut(s) 485, 511
AsuHPI GGTGA 2 cut(s) 20, 281
AxyI CCTNAGG 1 cut(s) 692
BaeGI GKGCMC 1 cut(s) 1058
BaeI ACNNNNGTAYC 2 cut(s) 785, 818
BanII GRGCYC 2 cut(s) 136, 1058
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 92, 888
BccI CCATC 2 cut(s) 381, 839
BciT130I CCWGG 3 cut(s) 428, 854, 1137
BciVI GTATCC 2 cut(s) 411, 860
BcnI CCSGG 2 cut(s) 485, 511
BcoDI GTCTC 3 cut(s) 291, 566, 987
BfaI CTAG 1 cut(s) 1159
BfmI CTRYAG 1 cut(s) 295
BfuAI ACCTGC 1 cut(s) 173
BfuI GTATCC 2 cut(s) 411, 860
BisI GCNGC 2 cut(s) 106, 877
BlsI GCNGC 2 cut(s) 107, 878
Bme1390I CCNGG 5 cut(s) 428, 485, 511, 854, 1137
BmgBI CACGTC 1 cut(s) 93
BmgT120I GGNCC 3 cut(s) 786, 1054, 1055
BmiI GGNNCC 1 cut(s) 1056
BmrFI CCNGG 5 cut(s) 428, 485, 511, 854, 1137
BmsI GCATC 3 cut(s) 324, 334, 850
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 699
BpuMI CCSGG 2 cut(s) 485, 511
BsaAI YACGTR 1 cut(s) 409
BsaBI GATNNNNATC 1 cut(s) 371
BsaJI CCNNGG 2 cut(s) 509, 1136
Bse21I CCTNAGG 1 cut(s) 692
Bse3DI GCAATG 1 cut(s) 871
Bse8I GATNNNNATC 1 cut(s) 371
BseBI CCWGG 3 cut(s) 428, 854, 1137
BseDI CCNNGG 2 cut(s) 509, 1136
BseGI GGATG 6 cut(s) 156, 315, 372, 539, 658, 982
BseJI GATNNNNATC 1 cut(s) 371
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 3 cut(s) 683, 804, 1089
BseRI GAGGAG 3 cut(s) 30, 584, 593
BseSI GKGCMC 1 cut(s) 1058
BseXI GCAGC 2 cut(s) 92, 888
BseYI CCCAGC 1 cut(s) 1090
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 788, 1056
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 2 cut(s) 484, 511
BsmAI GTCTC 3 cut(s) 291, 566, 987
BsmBI CGTCTC 1 cut(s) 987
BsmI GAATGC 3 cut(s) 108, 280, 1114
BsnI GGCC 2 cut(s) 788, 1056
Bsp120I GGGCCC 1 cut(s) 1054
Bsp1286I GDGCHC 2 cut(s) 136, 1058
Bsp143I GATC 3 cut(s) 487, 663, 937
BspACI CCGC 1 cut(s) 319
BspANI GGCC 2 cut(s) 788, 1056
BspCNI CTCAG 3 cut(s) 684, 803, 1088
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 1056
BspMAI CTGCAG 1 cut(s) 299
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 2 cut(s) 495, 658
BsrDI GCAATG 1 cut(s) 871
BssECI CCNNGG 2 cut(s) 509, 1136
BssMI GATC 3 cut(s) 487, 663, 937
BssSI CACGAG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 3 cut(s) 428, 854, 1137
Bst4CI ACNGT 5 cut(s) 308, 329, 399, 779, 929
Bst6I CTCTTC 2 cut(s) 580, 1014
BstBAI YACGTR 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 5 cut(s) 33, 42, 692, 790, 1075
BstF5I GGATG 6 cut(s) 156, 315, 372, 539, 658, 982
BstFNI CGCG 1 cut(s) 321
BstHHI GCGC 2 cut(s) 65, 187
BstKTI GATC 3 cut(s) 490, 666, 940
BstMAI GTCTC 3 cut(s) 291, 566, 987
BstMBI GATC 3 cut(s) 487, 663, 937
BstMWI GCNNNNNNNGC 2 cut(s) 174, 1053
BstNI CCWGG 3 cut(s) 428, 854, 1137
BstSCI CCNGG 5 cut(s) 426, 483, 509, 852, 1135
BstSFI CTRYAG 1 cut(s) 295
BstSLI GKGCMC 1 cut(s) 1058
BstSNI TACGTA 1 cut(s) 409
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 92, 888
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 663
BstXI CCANNNNNNTGG 1 cut(s) 845
BstYI RGATCY 1 cut(s) 663
Bsu36I CCTNAGG 1 cut(s) 692
BsuI GTATCC 2 cut(s) 411, 860
BsuRI GGCC 2 cut(s) 788, 1056
BtrI CACGTC 1 cut(s) 93
BtsCI GGATG 6 cut(s) 156, 315, 372, 539, 658, 982
BtsIMutI CAGTG 1 cut(s) 904
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 2 cut(s) 65, 187
Cfr13I GGNCC 3 cut(s) 786, 1054, 1055
CseI GACGC 1 cut(s) 267
Csp6I GTAC 3 cut(s) 325, 794, 1024
CviAII CATG 3 cut(s) 188, 248, 283
CviQI GTAC 3 cut(s) 325, 794, 1024
DdeI CTNAG 5 cut(s) 33, 42, 692, 790, 1075
DpnI GATC 3 cut(s) 489, 665, 939
DpnII GATC 3 cut(s) 487, 663, 937
Eam1104I CTCTTC 2 cut(s) 580, 1014
EarI CTCTTC 2 cut(s) 580, 1014
Ecl136II GAGCTC 1 cut(s) 134
Eco105I TACGTA 1 cut(s) 409
Eco24I GRGCYC 2 cut(s) 136, 1058
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 755
Eco81I CCTNAGG 1 cut(s) 692
EcoICRI GAGCTC 1 cut(s) 134
EcoO109I RGGNCCY 2 cut(s) 786, 1055
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 3 cut(s) 426, 852, 1135
EcoT38I GRGCYC 2 cut(s) 136, 1058
Esp3I CGTCTC 1 cut(s) 987
FaeI CATG 3 cut(s) 191, 251, 286
FatI CATG 3 cut(s) 187, 247, 282
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 106, 877
FokI GGATG 6 cut(s) 143, 302, 359, 526, 665, 989
FriOI GRGCYC 2 cut(s) 136, 1058
Fsp4HI GCNGC 2 cut(s) 106, 877
FspAI RTGCGCAY 1 cut(s) 186
FspBI CTAG 1 cut(s) 1159
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 2 cut(s) 64, 186
GluI GCNGC 2 cut(s) 106, 877
GsaI CCCAGC 1 cut(s) 1094
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 2 cut(s) 788, 1056
HapII CCGG 2 cut(s) 484, 511
HgaI GACGC 1 cut(s) 267
HhaI GCGC 2 cut(s) 65, 187
Hin1II CATG 3 cut(s) 191, 251, 286
Hin6I GCGC 2 cut(s) 63, 185
HinP1I GCGC 2 cut(s) 63, 185
HinfI GANTC 5 cut(s) 71, 227, 431, 453, 894
HpaII CCGG 2 cut(s) 484, 511
HphI GGTGA 2 cut(s) 20, 281
Hpy166II GTNNAC 5 cut(s) 58, 80, 769, 796, 1026
Hpy188I TCNGA 1 cut(s) 652
Hpy188III TCNNGA 7 cut(s) 96, 269, 450, 691, 806, 974, 1016
Hpy8I GTNNAC 5 cut(s) 58, 80, 769, 796, 1026
Hpy99I CGWCG 1 cut(s) 632
HpyAV CCTTC 3 cut(s) 190, 763, 913
HpyCH4III ACNGT 5 cut(s) 308, 329, 399, 779, 929
HpyCH4IV ACGT 4 cut(s) 54, 92, 408, 443
HpyCH4V TGCA 7 cut(s) 108, 168, 297, 863, 876, 987, 1112
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 1053
HpyF3I CTNAG 5 cut(s) 33, 42, 692, 790, 1075
HpySE526I ACGT 4 cut(s) 54, 92, 408, 443
Hsp92II CATG 3 cut(s) 191, 251, 286
HspAI GCGC 2 cut(s) 63, 185
Kzo9I GATC 3 cut(s) 487, 663, 937
Lsp1109I GCAGC 2 cut(s) 92, 888
LweI GCATC 3 cut(s) 324, 334, 850
MaeI CTAG 1 cut(s) 1159
MaeII ACGT 4 cut(s) 54, 92, 408, 443
MaeIII GTNAC 3 cut(s) 409, 814, 929
MalI GATC 3 cut(s) 489, 665, 939
MboI GATC 3 cut(s) 487, 663, 937
MboII GAAGA 7 cut(s) 58, 546, 597, 713, 719, 748, 1031
MflI RGATCY 1 cut(s) 663
MhlI GDGCHC 2 cut(s) 136, 1058
MluCI AATT 5 cut(s) 37, 141, 416, 436, 1141
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 3 cut(s) 511, 630, 761
MseI TTAA 3 cut(s) 86, 912, 945
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 1079
MspI CCGG 2 cut(s) 484, 511
MspR9I CCNGG 5 cut(s) 428, 485, 511, 854, 1137
Mva1269I GAATGC 3 cut(s) 108, 280, 1114
MvaI CCWGG 3 cut(s) 428, 854, 1137
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 174, 1053
NciI CCSGG 2 cut(s) 485, 511
NdeII GATC 3 cut(s) 487, 663, 937
NlaIII CATG 3 cut(s) 191, 251, 286
NlaIV GGNNCC 1 cut(s) 1056
NmuCI GTSAC 2 cut(s) 814, 929
NsbI TGCGCA 1 cut(s) 186
PctI GAATGC 3 cut(s) 108, 280, 1114
PfeI GAWTC 4 cut(s) 71, 227, 453, 894
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 2 cut(s) 107, 878
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Ppu21I YACGTR 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 136
Psp1406I AACGTT 1 cut(s) 443
Psp6I CCWGG 3 cut(s) 426, 852, 1135
PspFI CCCAGC 1 cut(s) 1090
PspGI CCWGG 3 cut(s) 426, 852, 1135
PspN4I GGNNCC 1 cut(s) 1056
PspOMI GGGCCC 1 cut(s) 1054
PspPI GGNCC 3 cut(s) 786, 1054, 1055
PstI CTGCAG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 663
PvuII CAGCTG 1 cut(s) 1079
RsaI GTAC 3 cut(s) 326, 795, 1025
RsaNI GTAC 3 cut(s) 325, 794, 1024
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 136
SaqAI TTAA 3 cut(s) 86, 912, 945
SatI GCNGC 2 cut(s) 106, 877
Sau3AI GATC 3 cut(s) 487, 663, 937
Sau96I GGNCC 3 cut(s) 786, 1054, 1055
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 5 cut(s) 428, 485, 511, 854, 1137
SduI GDGCHC 2 cut(s) 136, 1058
SfaNI GCATC 3 cut(s) 324, 334, 850
SfcI CTRYAG 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
SnaBI TACGTA 1 cut(s) 409
Sse9I AATT 5 cut(s) 37, 141, 416, 436, 1141
SsiI CCGC 1 cut(s) 319
SspMI CTAG 1 cut(s) 1159
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 5 cut(s) 426, 483, 509, 852, 1135
TaaI ACNGT 5 cut(s) 308, 329, 399, 779, 929
TaiI ACGT 4 cut(s) 57, 95, 411, 446
TaqI TCGA 2 cut(s) 495, 756
TasI AATT 5 cut(s) 37, 141, 416, 436, 1141
TatI WGTACW 2 cut(s) 793, 1023
TfiI GAWTC 4 cut(s) 71, 227, 453, 894
Tru1I TTAA 3 cut(s) 86, 912, 945
Tru9I TTAA 3 cut(s) 86, 912, 945
TscAI CASTG 1 cut(s) 904
TseFI GTSAC 2 cut(s) 814, 929
TseI GCWGC 2 cut(s) 105, 876
Tsp45I GTSAC 2 cut(s) 814, 929
TspDTI ATGAA 6 cut(s) 84, 264, 713, 895, 932, 1073
TspRI CASTG 1 cut(s) 904
XapI RAATTY 4 cut(s) 37, 141, 416, 436
XcmI CCANNNNNNNNNTGG 1 cut(s) 614
XmiI GTMKAC 1 cut(s) 79
XspI CTAG 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.