AT1G67880

Glycosyl transferase, family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004922
Physical Location & Seq
Reverse (-)
25453823 .. 25455823
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67880.1

Sequence Viewer

Length: 1173 bp
ATGTGGTGGATGATGGGAGAAAACGGTGGTCACTACTGTTCTAAAAAGTCCGATGATTTATGCGGAACTCAGGAATCAGATCGAGGCTTTGGTATTTCAAGACTCTGTTGTATCTTGCGTGGTGTGGATTTAAAATCGGTTCTGTTTCTGTTAGTAATCATGCCAATGTGTGTTCTTGGTGTATACATTAACGCTCTCAAGATTTCATATTTCTTGAGACCTTTATGGGAATCACCACCAAAACCATTCCATGAGATACCGCATTATCACCACGAGAACGCTTCTATGGAATCTCTCTGTAAACTCCACGGTTGGAGAACCCGTGAGTACCCTCGTCGTGTCTACGACGCTGTTTTGTTCAGTACTGAAGTTGAACTCCTCACGATACGGTGGAAAGAACTGTACCCATATGTTACTCAGTTTGTTCTACTTGAATCTAACTCGACTTTCACCGGATTACCAAAACCGCTTGTTTTCGCGGGGCATAGGGATGAGTTTAAGTTTATCGAGCCACGGTTGACTTACGGGTCGATAGGAGGAAGGTTTAAGAAAGGTGAGAAGAATCCTTTTTACGAAGAGGCTTATCAAAGAATCGCATTGGATCAGCTATTGAGAATAGCTGGTATCACTGATGATGACTTGTTGATTATGTCTGATGTTGATGAGATTCCGAGTAGACATACGATAAATCTTCTCCGTTGGTGCGATGACATACCACAAATTCTTCATCTTAGACTGAAGAATTACTTGTACTCTTTTGAGTTCCCTGTTGATGATAAGAGCTGGAGAGCATCGGTGCATAGATACCAGACGGGTAAAACAAGGTATGCGCATTATCGACAGTCTGATGTTATCTTGGCGGATTCAGGGTGGCATTGCAGTTTCTGTTTTAGACGTATAAGCGAGTTTGTGTTTAAGATGAAAGCTTATAGTCATTATGATCGAGTGAGATTCGCGCATTACTTGAACCCGAAAAGGGTTCAAAGAGTTATATGCAGCGGATCGGATTTGTTCGATATGATTCCCGAGGAATACACGTTTAAAGACATCATTGGTAAAATGGGACCGATCCCGCATTCTTACTCCGCGGTTCATCTTCCGGCGTACCTTTTAGAGAACGCGGAGAGGTACAAGTTTCTTCTTCCGGGGAACTGTTTGAGAGATGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glyco_transf_17

Protein Analysis

390

Amino Acids

45.88

Weight (kDa)

7.95

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 42 - 388 4.8e-186 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 526
Acc16I TGCGCA 1 cut(s) 831
AccI GTMKAC 3 cut(s) 183, 342, 676
AccII CGCG 4 cut(s) 479, 956, 1088, 1121
AclWI GGATC 3 cut(s) 609, 1009, 1063
AcsI RAATTY 1 cut(s) 720
AcuI CTGAAG 2 cut(s) 387, 758
AfaI GTAC 6 cut(s) 329, 364, 404, 752, 1106, 1130
AfiI CCNNNNNNNGG 1 cut(s) 976
AflIII ACRYGT 1 cut(s) 1035
AgsI TTSAA 5 cut(s) 99, 374, 434, 967, 983
AluBI AGCT 4 cut(s) 607, 620, 783, 926
AluI AGCT 4 cut(s) 607, 620, 783, 926
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 3 cut(s) 609, 1009, 1063
AlwNI CAGNNNCTG 1 cut(s) 885
Ama87I CYCGRG 1 cut(s) 1025
ApeKI GCWGC 1 cut(s) 996
ApoI RAATTY 1 cut(s) 720
AspLEI GCGC 2 cut(s) 832, 958
AspS9I GGNCC 1 cut(s) 1064
AsuC2I CCSGG 1 cut(s) 1146
AsuHPI GGTGA 4 cut(s) 225, 260, 442, 566
AvaI CYCGRG 1 cut(s) 1025
AvaII GGWCC 1 cut(s) 1064
BauI CACGAG 1 cut(s) 272
BbvI GCAGC 1 cut(s) 1008
BccI CCATC 1 cut(s) 7
BcnI CCSGG 1 cut(s) 1146
BcoDI GTCTC 1 cut(s) 211
BisI GCNGC 1 cut(s) 997
BlsI GCNGC 1 cut(s) 998
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 1146
Bme18I GGWCC 1 cut(s) 1064
BmeT110I CYCGRG 1 cut(s) 1025
BmgT120I GGNCC 1 cut(s) 1064
BmiI GGNNCC 1 cut(s) 1065
BmrFI CCNGG 1 cut(s) 1146
BmsI GCATC 1 cut(s) 800
BpmI CTGGAG 1 cut(s) 805
BpuEI CTTGAG 2 cut(s) 182, 235
BpuMI CCSGG 1 cut(s) 1146
BsaI GGTCTC 1 cut(s) 211
BsaJI CCNNGG 5 cut(s) 307, 512, 1026, 1086, 1145
BsaWI WCCGGW 1 cut(s) 452
BsaXI ACNNNNNCTCC 2 cut(s) 307, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 976
Bse3DI GCAATG 1 cut(s) 874
BseDI CCNNGG 5 cut(s) 307, 512, 1026, 1086, 1145
BseGI GGATG 2 cut(s) 15, 496
BseLI CCNNNNNNNGG 1 cut(s) 976
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 2 cut(s) 83, 431
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 1 cut(s) 1008
Bsh1236I CGCG 4 cut(s) 479, 956, 1088, 1121
BsiHKCI CYCGRG 1 cut(s) 1025
BsiSI CCGG 3 cut(s) 453, 1100, 1145
BslFI GGGAC 1 cut(s) 1077
BslI CCNNNNNNNGG 1 cut(s) 976
BsmAI GTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 1077
BsmI GAATGC 1 cut(s) 1075
Bso31I GGTCTC 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 1025
Bsp143I GATC 5 cut(s) 79, 601, 940, 1001, 1068
BspCNI CTCAG 2 cut(s) 82, 430
BspFNI CGCG 4 cut(s) 479, 956, 1088, 1121
BspLI GGNNCC 1 cut(s) 1065
BspPI GGATC 3 cut(s) 609, 1009, 1063
BspTNI GGTCTC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 874
BssECI CCNNGG 5 cut(s) 307, 512, 1026, 1086, 1145
BssMI GATC 5 cut(s) 79, 601, 940, 1001, 1068
BssNAI GTATAC 1 cut(s) 184
BssSI CACGAG 1 cut(s) 272
Bst1107I GTATAC 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 272
Bst4CI ACNGT 8 cut(s) 26, 38, 311, 390, 402, 516, 843, 1154
Bst6I CTCTTC 1 cut(s) 570
BstDEI CTNAG 3 cut(s) 69, 417, 731
BstDSI CCRYGG 3 cut(s) 307, 512, 1086
BstF5I GGATG 2 cut(s) 15, 496
BstFNI CGCG 4 cut(s) 479, 956, 1088, 1121
BstHHI GCGC 2 cut(s) 832, 958
BstKTI GATC 5 cut(s) 82, 604, 943, 1004, 1071
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 5 cut(s) 79, 601, 940, 1001, 1068
BstSCI CCNGG 1 cut(s) 1144
BstUI CGCG 4 cut(s) 479, 956, 1088, 1121
BstV1I GCAGC 1 cut(s) 1008
BstZ17I GTATAC 1 cut(s) 184
BtgI CCRYGG 3 cut(s) 307, 512, 1086
BtgZI GCGATG 1 cut(s) 720
BtsCI GGATG 2 cut(s) 15, 496
BtsIMutI CAGTG 1 cut(s) 627
CaiI CAGNNNCTG 1 cut(s) 885
CfoI GCGC 2 cut(s) 832, 958
Cfr13I GGNCC 1 cut(s) 1064
Cfr42I CCGCGG 1 cut(s) 1089
CseI GACGC 1 cut(s) 356
Csp6I GTAC 6 cut(s) 328, 363, 403, 751, 1105, 1129
CviAII CATG 2 cut(s) 160, 251
CviJI RGCY 7 cut(s) 87, 511, 581, 607, 620, 783, 926
CviKI_1 RGCY 7 cut(s) 87, 511, 581, 607, 620, 783, 926
CviQI GTAC 6 cut(s) 328, 363, 403, 751, 1105, 1129
DdeI CTNAG 3 cut(s) 69, 417, 731
DpnI GATC 5 cut(s) 81, 603, 942, 1003, 1070
DpnII GATC 5 cut(s) 79, 601, 940, 1001, 1068
DraI TTTAAA 2 cut(s) 132, 1042
DrdI GACNNNNNNGTC 1 cut(s) 526
DseDI GACNNNNNNGTC 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 1 cut(s) 875
Eco31I GGTCTC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 1064
Eco57I CTGAAG 2 cut(s) 387, 758
Eco88I CYCGRG 1 cut(s) 1025
FaeI CATG 2 cut(s) 163, 254
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FaqI GGGAC 1 cut(s) 1077
FatI CATG 2 cut(s) 159, 250
FauI CCCGC 2 cut(s) 472, 1080
FauNDI CATATG 1 cut(s) 409
FblI GTMKAC 3 cut(s) 183, 342, 676
Fnu4HI GCNGC 1 cut(s) 997
FokI GGATG 2 cut(s) 22, 503
Fsp4HI GCNGC 1 cut(s) 997
FspAI RTGCGCAY 1 cut(s) 831
FspI TGCGCA 1 cut(s) 831
GlaI GCGC 2 cut(s) 831, 957
GluI GCNGC 1 cut(s) 997
GsuI CTGGAG 1 cut(s) 805
HapII CCGG 3 cut(s) 453, 1100, 1145
HgaI GACGC 1 cut(s) 356
HhaI GCGC 2 cut(s) 832, 958
Hin1II CATG 2 cut(s) 163, 254
Hin6I GCGC 2 cut(s) 830, 956
HinP1I GCGC 2 cut(s) 830, 956
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HindIII AAGCTT 1 cut(s) 924
HpaII CCGG 3 cut(s) 453, 1100, 1145
HphI GGTGA 4 cut(s) 225, 260, 442, 566
Hpy166II GTNNAC 5 cut(s) 184, 302, 343, 519, 677
Hpy188I TCNGA 6 cut(s) 52, 79, 655, 672, 847, 1006
Hpy188III TCNNGA 6 cut(s) 71, 99, 199, 214, 382, 1025
Hpy8I GTNNAC 5 cut(s) 184, 302, 343, 519, 677
Hpy99I CGWCG 2 cut(s) 339, 350
HpyAV CCTTC 1 cut(s) 534
HpyCH4III ACNGT 8 cut(s) 26, 38, 311, 390, 402, 516, 843, 1154
HpyCH4IV ACGT 2 cut(s) 895, 1037
HpyCH4V TGCA 3 cut(s) 799, 879, 996
HpyF3I CTNAG 3 cut(s) 69, 417, 731
HpySE526I ACGT 2 cut(s) 895, 1037
Hsp92II CATG 2 cut(s) 163, 254
HspAI GCGC 2 cut(s) 830, 956
KspI CCGCGG 1 cut(s) 1089
Kzo9I GATC 5 cut(s) 79, 601, 940, 1001, 1068
LpnPI CCDG 9 cut(s) 56, 466, 606, 769, 780, 821, 852, 1113, 1158
Lsp1109I GCAGC 1 cut(s) 1008
LweI GCATC 1 cut(s) 800
MaeII ACGT 2 cut(s) 895, 1037
MaeIII GTNAC 2 cut(s) 29, 412
MalI GATC 5 cut(s) 81, 603, 942, 1003, 1070
MboI GATC 5 cut(s) 79, 601, 940, 1001, 1068
MboII GAAGA 8 cut(s) 571, 587, 683, 716, 751, 1088, 1130, 1133
MluCI AATT 2 cut(s) 720, 742
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 8 cut(s) 77, 342, 389, 530, 571, 1021, 1119, 1159
MseI TTAA 6 cut(s) 131, 189, 498, 546, 915, 1041
MslI CAYNNNNRTG 2 cut(s) 164, 489
MspA1I CMGCKG 2 cut(s) 999, 1088
MspI CCGG 3 cut(s) 453, 1100, 1145
MspR9I CCNGG 1 cut(s) 1146
Mva1269I GAATGC 1 cut(s) 1075
MvnI CGCG 4 cut(s) 479, 956, 1088, 1121
NciI CCSGG 1 cut(s) 1146
NdeI CATATG 1 cut(s) 409
NdeII GATC 5 cut(s) 79, 601, 940, 1001, 1068
NlaIII CATG 2 cut(s) 163, 254
NlaIV GGNNCC 1 cut(s) 1065
NmuCI GTSAC 1 cut(s) 29
NsbI TGCGCA 1 cut(s) 831
PctI GAATGC 1 cut(s) 1075
PkrI GCNGC 1 cut(s) 998
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 1065
PspPI GGNCC 1 cut(s) 1064
PstNI CAGNNNCTG 1 cut(s) 885
RsaI GTAC 6 cut(s) 329, 364, 404, 752, 1106, 1130
RsaNI GTAC 6 cut(s) 328, 363, 403, 751, 1105, 1129
RseI CAYNNNNRTG 2 cut(s) 164, 489
SacII CCGCGG 1 cut(s) 1089
SaqAI TTAA 6 cut(s) 131, 189, 498, 546, 915, 1041
SatI GCNGC 1 cut(s) 997
Sau3AI GATC 5 cut(s) 79, 601, 940, 1001, 1068
Sau96I GGNCC 1 cut(s) 1064
ScaI AGTACT 1 cut(s) 364
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 1146
SfaNI GCATC 1 cut(s) 800
Sfr303I CCGCGG 1 cut(s) 1089
SgrBI CCGCGG 1 cut(s) 1089
SinI GGWCC 1 cut(s) 1064
SmiMI CAYNNNNRTG 2 cut(s) 164, 489
SmlI CTYRAG 2 cut(s) 197, 214
SmoI CTYRAG 2 cut(s) 197, 214
Sse9I AATT 2 cut(s) 720, 742
StyD4I CCNGG 1 cut(s) 1144
TaaI ACNGT 8 cut(s) 26, 38, 311, 390, 402, 516, 843, 1154
TaiI ACGT 2 cut(s) 898, 1040
TaqI TCGA 7 cut(s) 82, 443, 507, 530, 838, 943, 1014
TaqII GACCGA 1 cut(s) 1081
TasI AATT 2 cut(s) 720, 742
TatI WGTACW 2 cut(s) 362, 750
Tru1I TTAA 6 cut(s) 131, 189, 498, 546, 915, 1041
Tru9I TTAA 6 cut(s) 131, 189, 498, 546, 915, 1041
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 996
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 4 cut(s) 195, 716, 935, 1082
TspGWI ACGGA 1 cut(s) 686
TspRI CASTG 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 1064
XapI RAATTY 1 cut(s) 720
XmiI GTMKAC 3 cut(s) 183, 342, 676
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.