Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Forward (+)

4597567 .. 4599141

Gene Structure 1575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGAGCTGATGAAAATAACACTTTAGATCTTAATAACTTACCTGATGATCCTTCTAGAGACATTTTCCCATTCTTTGAAGAAGGCTTCTCTTCATCTTCTTCTTCTGGAGGGTTTAGAGAGAAGCAAACAAAAGATGGGAAAGAGTATGAATGTAGATTTTGTTCACTAAAGTTCTTCAAATCTCAAGCTCTCGGTGGCCACATGAACCGCCACCGTCAAGAAAGAGAGACGGAGTCACTAAACAAAGCTCGTGAACTTGTTCTTCGCAACGATAGCTTTCCTCCTCATCAAGGACCTCCATCGTTTAGTTATCATCAAGGAGATGTGCATATAGGAGACCTAACACAATTTAAACCAATGATGTACCCACCGAGACATTTCTCACTCCCCGGCTCTTCCTCCATCCTCCAGCTGCAACCACCATATCTTTATCCTCCGCTGTCTTCACCGTTTCCTCAACATAACACCAACATAGGCAACAACGGTACGCGTCACCAAACCCTAACCAATAGCGTTTGCGGTGGTCGTGCACTACCTGACTCAAGTTACACCTTCATCGGTGCACCAGTGGCTAATGGTTCTAGAGTTGCTCCACATCTACCTCCACATCATGGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.15

Weight (kDa)

7.19

Isoelectric Point (pI)

61.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccII	CGCG	1 cut(s)	493
AciI	CCGC	3 cut(s)	211, 440, 522
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	199
AfaI	GTAC	2 cut(s)	368, 490
AfiI	CCNNNNNNNGG	2 cut(s)	293, 614
AflIII	ACRYGT	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	80, 181
AluBI	AGCT	5 cut(s)	8, 191, 251, 279, 415
AluI	AGCT	5 cut(s)	8, 191, 251, 279, 415
Alw21I	GWGCWC	2 cut(s)	535, 568
Alw26I	GTCTC	4 cut(s)	54, 224, 333, 370
Alw44I	GTGCAC	2 cut(s)	531, 564
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	199
ApaLI	GTGCAC	2 cut(s)	531, 564
ApeKI	GCWGC	1 cut(s)	415
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	2 cut(s)	441, 488
AvaII	GGWCC	1 cut(s)	296
BaeGI	GKGCMC	2 cut(s)	535, 568
BalI	TGGCCA	1 cut(s)	201
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	535, 568
BbvI	GCAGC	1 cut(s)	402
BccI	CCATC	3 cut(s)	131, 310, 413
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	4 cut(s)	54, 224, 333, 370
BfaI	CTAG	2 cut(s)	57, 585
BglII	AGATCT	1 cut(s)	28
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	438
BpmI	CTGGAG	2 cut(s)	129, 395
BpuEI	CTTGAG	2 cut(s)	171, 529
BpuMI	CCSGG	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 614
Bse1I	ACTGG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	293, 614
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	2 cut(s)	535, 568
BseXI	GCAGC	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	493
BshFI	GGCC	1 cut(s)	201
BsiHKAI	GWGCWC	2 cut(s)	535, 568
BsiSI	CCGG	1 cut(s)	393
BslI	CCNNNNNNNGG	2 cut(s)	293, 614
BsmAI	GTCTC	4 cut(s)	54, 224, 333, 370
BsmBI	CGTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	535, 568
Bsp143I	GATC	2 cut(s)	28, 49
BspACI	CCGC	3 cut(s)	211, 440, 522
BspANI	GGCC	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	493
BspPI	GGATC	1 cut(s)	44
BspQI	GCTCTTC	1 cut(s)	403
BspTNI	GGTCTC	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	2 cut(s)	28, 49
BssSI	CACGAG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	252
Bst4CI	ACNGT	3 cut(s)	218, 453, 488
Bst6I	CTCTTC	2 cut(s)	97, 403
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	405
BstFNI	CGCG	1 cut(s)	493
BstKTI	GATC	2 cut(s)	31, 52
BstMAI	GTCTC	4 cut(s)	54, 224, 333, 370
BstMBI	GATC	2 cut(s)	28, 49
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 572
BstSCI	CCNGG	1 cut(s)	391
BstSLI	GKGCMC	2 cut(s)	535, 568
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	1 cut(s)	402
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	576
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	367, 489
CviAII	CATG	2 cut(s)	205, 614
CviQI	GTAC	2 cut(s)	367, 489
DpnI	GATC	2 cut(s)	30, 51
DpnII	GATC	2 cut(s)	28, 49
DraI	TTTAAA	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	97, 403
EarI	CTCTTC	2 cut(s)	97, 403
Eco31I	GGTCTC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	296
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	2 cut(s)	208, 617
FaiI	YATR	9 cut(s)	150, 206, 333, 335, 427, 465, 476, 615, 622
FatI	CATG	2 cut(s)	204, 613
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	2 cut(s)	57, 585
GluI	GCNGC	1 cut(s)	416
GsuI	CTGGAG	2 cut(s)	129, 395
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	393
HgaI	GACGC	1 cut(s)	482
Hin1II	CATG	2 cut(s)	208, 617
HinfI	GANTC	2 cut(s)	236, 542
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	2 cut(s)	441, 488
Hpy166II	GTNNAC	4 cut(s)	167, 257, 533, 566
Hpy188III	TCNNGA	5 cut(s)	57, 108, 221, 254, 585
Hpy8I	GTNNAC	4 cut(s)	167, 257, 533, 566
HpyAV	CCTTC	3 cut(s)	63, 77, 565
HpyCH4III	ACNGT	3 cut(s)	218, 453, 488
HpyCH4V	TGCA	4 cut(s)	331, 418, 533, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 572
Hsp92II	CATG	2 cut(s)	208, 617
Kzo9I	GATC	2 cut(s)	28, 49
LguI	GCTCTTC	1 cut(s)	403
LmnI	GCTCC	1 cut(s)	598
LpnPI	CCDG	6 cut(s)	57, 93, 406, 425, 552, 582
Lsp1109I	GCAGC	1 cut(s)	402
MaeI	CTAG	2 cut(s)	57, 585
MaeIII	GTNAC	3 cut(s)	237, 494, 548
MalI	GATC	2 cut(s)	30, 51
MboI	GATC	2 cut(s)	28, 49
MboII	GAAGA	9 cut(s)	84, 90, 92, 93, 96, 169, 257, 390, 438
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	2 cut(s)	535, 568
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	1 cut(s)	350
MluI	ACGCGT	1 cut(s)	491
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	2 cut(s)	245, 536
MnlI	CCTC	9 cut(s)	104, 294, 297, 309, 412, 419, 447, 468, 615
Mox20I	TGGCCA	1 cut(s)	201
MroXI	GAANNNNTTC	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	2 cut(s)	33, 354
Msp20I	TGGCCA	1 cut(s)	201
MspA1I	CMGCKG	2 cut(s)	415, 442
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	2 cut(s)	276, 572
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	2 cut(s)	28, 49
NlaIII	CATG	2 cut(s)	208, 617
NmuCI	GTSAC	2 cut(s)	237, 494
PciSI	GCTCTTC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	261
PflFI	GACNNNGTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	2 cut(s)	244, 536
PpsI	GAGTC	2 cut(s)	244, 536
PpuMI	RGGWCCY	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	296
PspPI	GGNCC	1 cut(s)	296
PspPPI	RGGWCCY	1 cut(s)	296
PsrI	GAACNNNNNNTAC	2 cut(s)	148, 180
PsuI	RGATCY	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	2 cut(s)	368, 490
RsaNI	GTAC	2 cut(s)	367, 489
SapI	GCTCTTC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	33, 354
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	2 cut(s)	28, 49
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	2 cut(s)	245, 536
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	2 cut(s)	535, 568
SinI	GGWCC	1 cut(s)	296
SmlI	CTYRAG	2 cut(s)	186, 544
SmoI	CTYRAG	2 cut(s)	186, 544
Sse9I	AATT	1 cut(s)	350
SsiI	CCGC	3 cut(s)	211, 440, 522
SspMI	CTAG	2 cut(s)	57, 585
StyD4I	CCNGG	1 cut(s)	391
TaaI	ACNGT	3 cut(s)	218, 453, 488
TasI	AATT	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	33, 354
Tru9I	TTAA	2 cut(s)	33, 354
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	2 cut(s)	237, 494
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	2 cut(s)	237, 494
TspDTI	ATGAA	5 cut(s)	27, 84, 165, 221, 547
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	576
Tth111I	GACNNNGTC	1 cut(s)	235
Van91I	CCANNNNNTGG	1 cut(s)	614
VneI	GTGCAC	2 cut(s)	531, 564
VpaK11BI	GGWCC	1 cut(s)	296
XagI	CCTNNNNNAGG	1 cut(s)	291
XbaI	TCTAGA	2 cut(s)	56, 584
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	2 cut(s)	57, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.