Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Reverse (-)

2342769 .. 2345436

Gene Structure 2668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03530.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTGGCATTTTTGGATTGCCAGGCCCGCCCCACTCTAACGACACCGATACTGCGACCTGACGAAGGAAACCCACTAGACCTCAACAACTTGCCTGAGGATCATTTCGGCAGGGATGGCAAACAAGTTGCCGACGACAGCTCCTCCGGCAGCTACAGAAAAAAGAAAAGCAGTACAAAAGATGGAAAAGACGAGAGCGGGAAGGTCTACGAGTGTAGGTTTTGCTCCCTCAAGTTCTGCAAATCTCAGGCCCTCGGGGGACACATGAACCGCCACCGTCAAGAAAGGGAGACAGAACAACTAAACCGGGCTCGTCAGTTGGTTTTCAATAACGATAACCTAGCCGCCCCTCCTTCTCACCTAGGATGCTGCCATCCGATTCCCCAAGGAGGGTATCATCATCCGGCTGCTGCAGGCAACAACAATGGTGGTGTTGATCCAACATTACCTCTCAGATTCCCACCAAGAATTTTTTCTGGTTCTTCATCAAACACCCTTATACCGCCACCACCGGTACCGGCACCGCAGGGAGGCGTACAAGTACAACCGCCTCAACCCTACTTATATCCGTCTCCGTCGCGGCCCATGTCCTTCCCTGCTTCTTCCCATTACCCTCATCATCAAGTCAATGACTATTACGTTGGACATGTTCTTAGCAACAACACTACTGGCACTCCTTCATACGGCAACCCAAATGTAAACTACGGAGTGGCACCGGCGGAGTCCACCAACTACACTTGCATTGGGGCGCCTGTGGGACCAGGAGGCGGTGGAGGTAGTGGTGGTGGTGGTGGTCGTAGAGACGGATCGCTGCACGTGAATCAGGAAGAAGGATTGAATTGGAGCAGGAGCTACGCAGGGACTCCTTCGATCAATCGATTTCAACATGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

31.98

Weight (kDa)

8.44

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	514
AccB1I	GGYRCC	4 cut(s)	514, 520, 712, 748
AccBSI	CCGCTC	1 cut(s)	198
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	580
AclWI	GGATC	3 cut(s)	108, 431, 814
AcsI	RAATTY	1 cut(s)	468
AcvI	CACGTG	1 cut(s)	817
AcyI	GRCGYC	1 cut(s)	749
AfaI	GTAC	4 cut(s)	175, 516, 537, 543
AfiI	CCNNNNNNNGG	6 cut(s)	65, 389, 390, 530, 683, 767
AflIII	ACRYGT	1 cut(s)	646
AgeI	ACCGGT	1 cut(s)	511
AgsI	TTSAA	3 cut(s)	328, 838, 884
AjnI	CCWGG	2 cut(s)	21, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	457, 489
AluBI	AGCT	3 cut(s)	141, 153, 852
AluI	AGCT	3 cut(s)	141, 153, 852
Alw26I	GTCTC	3 cut(s)	284, 576, 795
AlwI	GGATC	3 cut(s)	108, 431, 814
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	3 cut(s)	24, 249, 581
ApeKI	GCWGC	5 cut(s)	150, 369, 407, 410, 811
ApoI	RAATTY	1 cut(s)	468
AsiGI	ACCGGT	1 cut(s)	511
Asp700I	GAANNNNTTC	1 cut(s)	472
Asp718I	GGTACC	1 cut(s)	514
AspA2I	CCTAGG	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	751
AspS9I	GGNCC	4 cut(s)	25, 250, 582, 758
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	758
AvrII	CCTAGG	1 cut(s)	361
AxyI	CCTNAGG	1 cut(s)	96
BanI	GGYRCC	4 cut(s)	514, 520, 712, 748
BanII	GRGCYC	1 cut(s)	313
BbrPI	CACGTG	1 cut(s)	817
BbvI	GCAGC	5 cut(s)	162, 356, 394, 397, 798
BccI	CCATC	3 cut(s)	110, 176, 381
BceAI	ACGGC	1 cut(s)	700
BciT130I	CCWGG	2 cut(s)	23, 762
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	3 cut(s)	284, 576, 795
BfaI	CTAG	3 cut(s)	77, 341, 362
BfmI	CTRYAG	2 cut(s)	154, 411
BfoI	RGCGCY	1 cut(s)	752
BisI	GCNGC	7 cut(s)	151, 345, 370, 408, 411, 581, 812
BlnI	CCTAGG	1 cut(s)	361
BlsI	GCNGC	7 cut(s)	152, 346, 371, 409, 412, 582, 813
Bme1390I	CCNGG	3 cut(s)	23, 308, 762
Bme18I	GGWCC	1 cut(s)	758
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	4 cut(s)	25, 250, 582, 758
BmiI	GGNNCC	5 cut(s)	516, 522, 714, 750, 759
BmrFI	CCNGG	3 cut(s)	23, 308, 762
BmsI	GCATC	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	308
Bsa29I	ATCGAT	1 cut(s)	877
BsaAI	YACGTR	1 cut(s)	817
BsaHI	GRCGYC	1 cut(s)	749
BsaJI	CCNNGG	3 cut(s)	253, 361, 385
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 128, 155, 158, 658, 688
Bsc4I	CCNNNNNNNGG	6 cut(s)	65, 389, 390, 530, 683, 767
Bse118I	RCCGGY	3 cut(s)	511, 517, 715
Bse1I	ACTGG	1 cut(s)	673
Bse21I	CCTNAGG	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	23, 762
BseCI	ATCGAT	1 cut(s)	877
BseDI	CCNNGG	3 cut(s)	253, 361, 385
BseGI	GGATG	4 cut(s)	121, 371, 373, 400
BseLI	CCNNNNNNNGG	6 cut(s)	65, 389, 390, 530, 683, 767
BseMII	CTCAG	3 cut(s)	87, 260, 466
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	5 cut(s)	162, 356, 394, 397, 798
BsgI	GTGCAG	1 cut(s)	797
Bsh1236I	CGCG	1 cut(s)	580
BshFI	GGCC	3 cut(s)	26, 251, 583
BshNI	GGYRCC	4 cut(s)	514, 520, 712, 748
BshTI	ACCGGT	1 cut(s)	511
BshVI	ATCGAT	1 cut(s)	877
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	6 cut(s)	147, 307, 404, 512, 518, 716
BslFI	GGGAC	3 cut(s)	273, 771, 874
BslI	CCNNNNNNNGG	6 cut(s)	65, 389, 390, 530, 683, 767
BsmAI	GTCTC	3 cut(s)	284, 576, 795
BsmBI	CGTCTC	2 cut(s)	576, 795
BsmFI	GGGAC	3 cut(s)	273, 771, 874
BsnI	GGCC	3 cut(s)	26, 251, 583
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	100, 436, 806, 870
BspANI	GGCC	3 cut(s)	26, 251, 583
BspCNI	CTCAG	3 cut(s)	88, 259, 465
BspDI	ATCGAT	1 cut(s)	877
BspFNI	CGCG	1 cut(s)	580
BspLI	GGNNCC	5 cut(s)	516, 522, 714, 750, 759
BspMAI	CTGCAG	1 cut(s)	415
BspPI	GGATC	3 cut(s)	108, 431, 814
BspT107I	GGYRCC	4 cut(s)	514, 520, 712, 748
BsrBI	CCGCTC	1 cut(s)	198
BsrFI	RCCGGY	3 cut(s)	511, 517, 715
BsrI	ACTGG	1 cut(s)	673
BssAI	RCCGGY	3 cut(s)	511, 517, 715
BssECI	CCNNGG	3 cut(s)	253, 361, 385
BssMI	GATC	4 cut(s)	100, 436, 806, 870
BssNI	GRCGYC	1 cut(s)	749
BssT1I	CCWWGG	2 cut(s)	361, 385
Bst2UI	CCWGG	2 cut(s)	23, 762
Bst4CI	ACNGT	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	749
BstBAI	YACGTR	1 cut(s)	817
BstC8I	GCNNGC	2 cut(s)	28, 415
BstDEI	CTNAG	4 cut(s)	96, 246, 452, 653
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstF5I	GGATG	4 cut(s)	121, 371, 373, 400
BstFNI	CGCG	1 cut(s)	580
BstH2I	RGCGCY	1 cut(s)	752
BstHHI	GCGC	1 cut(s)	751
BstKTI	GATC	4 cut(s)	103, 439, 809, 873
BstMAI	GTCTC	3 cut(s)	284, 576, 795
BstMBI	GATC	4 cut(s)	100, 436, 806, 870
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 117, 147
BstNI	CCWGG	2 cut(s)	23, 762
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	3 cut(s)	21, 306, 760
BstSFI	CTRYAG	2 cut(s)	154, 411
BstUI	CGCG	1 cut(s)	580
BstV1I	GCAGC	5 cut(s)	162, 356, 394, 397, 798
Bsu15I	ATCGAT	1 cut(s)	877
Bsu36I	CCTNAGG	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	26, 251, 583
BsuTUI	ATCGAT	1 cut(s)	877
BtsCI	GGATG	4 cut(s)	121, 371, 373, 400
Cac8I	GCNNGC	2 cut(s)	28, 415
CfoI	GCGC	1 cut(s)	751
Cfr10I	RCCGGY	3 cut(s)	511, 517, 715
Cfr13I	GGNCC	4 cut(s)	25, 250, 582, 758
ClaI	ATCGAT	1 cut(s)	877
Csp6I	GTAC	4 cut(s)	174, 515, 536, 542
CspAI	ACCGGT	1 cut(s)	511
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	4 cut(s)	265, 586, 647, 887
CviQI	GTAC	4 cut(s)	174, 515, 536, 542
DdeI	CTNAG	4 cut(s)	96, 246, 452, 653
DinI	GGCGCC	1 cut(s)	750
DpnI	GATC	4 cut(s)	102, 438, 808, 872
DpnII	GATC	4 cut(s)	100, 436, 806, 870
EciI	GGCGGA	1 cut(s)	734
Eco130I	CCWWGG	2 cut(s)	361, 385
Eco24I	GRGCYC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	758
Eco72I	CACGTG	1 cut(s)	817
Eco81I	CCTNAGG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	21, 760
EcoT14I	CCWWGG	2 cut(s)	361, 385
EcoT38I	GRGCYC	1 cut(s)	313
EgeI	GGCGCC	1 cut(s)	750
EheI	GGCGCC	1 cut(s)	750
ErhI	CCWWGG	2 cut(s)	361, 385
Esp3I	CGTCTC	2 cut(s)	576, 795
FaeI	CATG	4 cut(s)	268, 589, 650, 890
FaiI	YATR	7 cut(s)	266, 500, 565, 587, 648, 682, 888
FaqI	GGGAC	3 cut(s)	273, 771, 874
FatI	CATG	4 cut(s)	264, 585, 646, 886
FauI	CCCGC	2 cut(s)	35, 191
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	7 cut(s)	151, 345, 370, 408, 411, 581, 812
FokI	GGATG	4 cut(s)	128, 360, 378, 387
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	7 cut(s)	151, 345, 370, 408, 411, 581, 812
FspBI	CTAG	3 cut(s)	77, 341, 362
GlaI	GCGC	1 cut(s)	750
GluI	GCNGC	7 cut(s)	151, 345, 370, 408, 411, 581, 812
HaeII	RGCGCY	1 cut(s)	752
HaeIII	GGCC	3 cut(s)	26, 251, 583
HapII	CCGG	6 cut(s)	147, 307, 404, 512, 518, 716
HhaI	GCGC	1 cut(s)	751
Hin1I	GRCGYC	1 cut(s)	749
Hin1II	CATG	4 cut(s)	268, 589, 650, 890
Hin6I	GCGC	1 cut(s)	749
HinP1I	GCGC	1 cut(s)	749
HinfI	GANTC	5 cut(s)	379, 456, 722, 820, 862
HpaII	CCGG	6 cut(s)	147, 307, 404, 512, 518, 716
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	3 cut(s)	208, 700, 726
Hpy188I	TCNGA	2 cut(s)	378, 455
Hpy188III	TCNNGA	2 cut(s)	281, 824
Hpy8I	GTNNAC	3 cut(s)	208, 700, 726
Hpy99I	CGWCG	2 cut(s)	137, 580
HpyAV	CCTTC	7 cut(s)	59, 196, 363, 601, 687, 824, 876
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	2 cut(s)	639, 816
HpyCH4V	TGCA	4 cut(s)	240, 413, 741, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 117, 147
HpyF3I	CTNAG	4 cut(s)	96, 246, 452, 653
HpySE526I	ACGT	2 cut(s)	639, 816
Hsp92I	GRCGYC	1 cut(s)	749
Hsp92II	CATG	4 cut(s)	268, 589, 650, 890
HspAI	GCGC	1 cut(s)	749
KasI	GGCGCC	1 cut(s)	748
KpnI	GGTACC	1 cut(s)	518
Kzo9I	GATC	4 cut(s)	100, 436, 806, 870
LmnI	GCTCC	4 cut(s)	146, 230, 843, 849
Lsp1109I	GCAGC	5 cut(s)	162, 356, 394, 397, 798
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	3 cut(s)	77, 341, 362
MaeII	ACGT	2 cut(s)	639, 816
MalI	GATC	4 cut(s)	102, 438, 808, 872
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	4 cut(s)	100, 436, 806, 870
MboII	GAAGA	3 cut(s)	474, 594, 839
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	2 cut(s)	468, 838
Mly113I	GGCGCC	1 cut(s)	749
MlyI	GAGTC	2 cut(s)	731, 856
MmeI	TCCRAC	2 cut(s)	464, 622
MroXI	GAANNNNTTC	1 cut(s)	472
MspI	CCGG	6 cut(s)	147, 307, 404, 512, 518, 716
MspR9I	CCNGG	3 cut(s)	23, 308, 762
MvaI	CCWGG	2 cut(s)	23, 762
MvnI	CGCG	1 cut(s)	580
MwoI	GCNNNNNNNGC	3 cut(s)	27, 117, 147
NarI	GGCGCC	1 cut(s)	749
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	4 cut(s)	100, 436, 806, 870
NlaIII	CATG	4 cut(s)	268, 589, 650, 890
NlaIV	GGNNCC	5 cut(s)	516, 522, 714, 750, 759
NspI	RCATGY	1 cut(s)	650
PciI	ACATGT	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	379, 456, 820
PinAI	ACCGGT	1 cut(s)	511
PkrI	GCNGC	7 cut(s)	152, 346, 371, 409, 412, 582, 813
PleI	GAGTC	2 cut(s)	730, 856
PluTI	GGCGCC	1 cut(s)	752
PmaCI	CACGTG	1 cut(s)	817
PmlI	CACGTG	1 cut(s)	817
PpsI	GAGTC	2 cut(s)	730, 856
Ppu21I	YACGTR	1 cut(s)	817
PscI	ACATGT	1 cut(s)	646
Psp6I	CCWGG	2 cut(s)	21, 760
PspCI	CACGTG	1 cut(s)	817
PspGI	CCWGG	2 cut(s)	21, 760
PspN4I	GGNNCC	5 cut(s)	516, 522, 714, 750, 759
PspPI	GGNCC	4 cut(s)	25, 250, 582, 758
PstI	CTGCAG	1 cut(s)	415
RsaI	GTAC	4 cut(s)	175, 516, 537, 543
RsaNI	GTAC	4 cut(s)	174, 515, 536, 542
SatI	GCNGC	7 cut(s)	151, 345, 370, 408, 411, 581, 812
Sau3AI	GATC	4 cut(s)	100, 436, 806, 870
Sau96I	GGNCC	4 cut(s)	25, 250, 582, 758
SchI	GAGTC	2 cut(s)	731, 856
ScrFI	CCNGG	3 cut(s)	23, 308, 762
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	1 cut(s)	356
SfcI	CTRYAG	2 cut(s)	154, 411
SfoI	GGCGCC	1 cut(s)	750
SgrAI	CRCCGGYG	1 cut(s)	715
SinI	GGWCC	1 cut(s)	758
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	468, 838
SspDI	GGCGCC	1 cut(s)	748
SspMI	CTAG	3 cut(s)	77, 341, 362
StyD4I	CCNGG	3 cut(s)	21, 306, 760
StyI	CCWWGG	2 cut(s)	361, 385
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	2 cut(s)	642, 819
TaqI	TCGA	2 cut(s)	869, 877
TasI	AATT	2 cut(s)	468, 838
TatI	WGTACW	2 cut(s)	173, 541
TauI	GCSGC	2 cut(s)	347, 583
TfiI	GAWTC	3 cut(s)	379, 456, 820
TseI	GCWGC	5 cut(s)	150, 369, 407, 410, 811
TspDTI	ATGAA	3 cut(s)	281, 474, 669
TspGWI	ACGGA	4 cut(s)	558, 564, 720, 819
VpaK11BI	GGWCC	1 cut(s)	758
XagI	CCTNNNNNAGG	1 cut(s)	63
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	1 cut(s)	650
XmaJI	CCTAGG	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	472
XspI	CTAG	3 cut(s)	77, 341, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.