Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Reverse (-)

56265418 .. 56275316

Gene Structure 9899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG340300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCAGACATCTCCAGCCTCGTCGATCAACACCAGGATAAGCTTGGCGTTTCCGTCGCAGCCCTCGTTCCTGCCGGTCGCCCTGCGGAATCCATTAGACCTCAACAACTTGCCTGATGATCATAATCGAGACAGAGATAGAGATAGAGACCGAGAAAATGGTAAACAATTCATCGACGGCGACGCCTCCTCCTCCTCAGGCCATAGAAAAAAGAAAAGCGGCGGAAAAGATGGAAAAGACGAGAGTGGGAAGGTCTACGAGTGTAGGTTTTGTTCCCTCAAGTTCTGCAAATCTCAAGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAGACAGAGACACTAAACCGTGCTCGTCAGCTGGTCTTCAACAACGATAACCTAGCCGCTCCTGGCCCTCCTCATTTAGGCTGCTGCCATCCGATGACATCTCCAGGAGGGTATCCCCACCCAATTGCAGGAGCTCCCGGTGACCCAACAACATTACCTCTGAGATTCCCTGCAAGAATGTTTTCTGGTTCTCCTTCCACACAACTCATACCACCGCCGACAGCAGCGGCCCCAGGTCAACCACCGCAAGCCGTACAGCCCTCGCAGCCCTACTTATACCCCTCTCCTTCACGCCCCATGTCCTACCCTTCTTCACACTATCAACACCAAAATGACTACTATGTCGGTCATGTCCTCGGTGGTAACAACACTAGTGCGTCCCAGTATGGCCATCATCTGAATGTGAGCTATGGCGCCACGGCGGGTGTACAAGATCATCATCAGTCCAACAACAACGGTTACAACAACTATACTTGTATTGGTGCTCCGGTCTCGCATAGCGGGGGGTTTGGGCAAGGCAGCAGCAGCCTGAGTTCGGAGTTGACTGGATCGGGAGGAGGAGGCGGTGTTGGTGGTGGAGCTAGGGATGGGTCTATGAGCTACTCAGGAACACAACCCCCTCCACCTCCTTCCATCAACCGATTTCAACATGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

331

Amino Acids

35.26

Weight (kDa)

8.86

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	677
AccB1I	GGYRCC	1 cut(s)	749
AccBSI	CCGCTC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	255
AclWI	GGATC	1 cut(s)	892
AcoI	YGGCCR	1 cut(s)	724
AcyI	GRCGYC	2 cut(s)	183, 750
AfaI	GTAC	2 cut(s)	591, 765
AfiI	CCNNNNNNNGG	4 cut(s)	334, 413, 464, 871
AgsI	TTSAA	2 cut(s)	376, 983
AhlI	ACTAGT	1 cut(s)	707
AjnI	CCWGG	4 cut(s)	32, 397, 439, 568
AluBI	AGCT	7 cut(s)	42, 299, 367, 470, 744, 917, 936
AluI	AGCT	7 cut(s)	42, 299, 367, 470, 744, 917, 936
Alw21I	GWGCWC	3 cut(s)	361, 472, 823
Alw26I	GTCTC	5 cut(s)	123, 141, 332, 338, 832
AlwI	GGATC	1 cut(s)	892
AoxI	GGCC	4 cut(s)	199, 400, 564, 724
ApeKI	GCWGC	8 cut(s)	58, 417, 420, 560, 601, 855, 858, 861
Asp700I	GAANNNNTTC	1 cut(s)	517
AspLEI	GCGC	1 cut(s)	752
AspS9I	GGNCC	2 cut(s)	401, 565
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	1 cut(s)	488
AxyI	CCTNAGG	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	749
BanII	GRGCYC	1 cut(s)	472
BbsI	GAAGAC	1 cut(s)	364
Bbv12I	GWGCWC	3 cut(s)	361, 472, 823
BbvI	GCAGC	8 cut(s)	70, 404, 407, 572, 613, 867, 870, 873
BccI	CCATC	5 cut(s)	224, 432, 735, 917, 977
BceAI	ACGGC	3 cut(s)	193, 572, 771
BciT130I	CCWGG	4 cut(s)	34, 399, 441, 570
BciVI	GTATCC	1 cut(s)	459
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	5 cut(s)	123, 141, 332, 338, 832
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	3 cut(s)	389, 708, 918
BfoI	RGCGCY	1 cut(s)	753
BfuI	GTATCC	1 cut(s)	459
Bme1390I	CCNGG	5 cut(s)	34, 399, 441, 474, 570
BmgT120I	GGNCC	2 cut(s)	401, 565
BmiI	GGNNCC	2 cut(s)	567, 751
BmrFI	CCNGG	5 cut(s)	34, 399, 441, 474, 570
BmrI	ACTGGG	1 cut(s)	712
BmuI	ACTGGG	1 cut(s)	712
BpiI	GAAGAC	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	423
BpuEI	CTTGAG	2 cut(s)	263, 279
BpuMI	CCSGG	1 cut(s)	474
BsaBI	GATNNNNATC	2 cut(s)	123, 774
BsaHI	GRCGYC	2 cut(s)	183, 750
BsaI	GGTCTC	2 cut(s)	141, 832
BsaJI	CCNNGG	3 cut(s)	568, 691, 753
BsaWI	WCCGGW	1 cut(s)	823
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 888, 918
Bsc4I	CCNNNNNNNGG	4 cut(s)	334, 413, 464, 871
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	718, 886
Bse21I	CCTNAGG	1 cut(s)	196
Bse8I	GATNNNNATC	2 cut(s)	123, 774
BseBI	CCWGG	4 cut(s)	34, 399, 441, 570
BseDI	CCNNGG	3 cut(s)	568, 691, 753
BseGI	GGATG	2 cut(s)	424, 928
BseJI	GATNNNNATC	2 cut(s)	123, 774
BseLI	CCNNNNNNNGG	4 cut(s)	334, 413, 464, 871
BseMII	CTCAG	4 cut(s)	210, 488, 857, 954
BseNI	ACTGG	2 cut(s)	718, 886
BseRI	GAGGAG	6 cut(s)	178, 181, 184, 396, 906, 909
BseXI	GCAGC	8 cut(s)	70, 404, 407, 572, 613, 867, 870, 873
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	201, 402, 566, 726
BshNI	GGYRCC	1 cut(s)	749
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	3 cut(s)	361, 472, 823
BsiSI	CCGG	3 cut(s)	74, 474, 824
BslFI	GGGAC	2 cut(s)	321, 700
BslI	CCNNNNNNNGG	4 cut(s)	334, 413, 464, 871
BsmAI	GTCTC	5 cut(s)	123, 141, 332, 338, 832
BsmFI	GGGAC	2 cut(s)	321, 700
BsnI	GGCC	4 cut(s)	201, 402, 566, 726
Bso31I	GGTCTC	2 cut(s)	141, 832
Bsp1286I	GDGCHC	3 cut(s)	361, 472, 823
Bsp1407I	TGTACA	1 cut(s)	763
Bsp143I	GATC	4 cut(s)	24, 118, 769, 884
BspANI	GGCC	4 cut(s)	201, 402, 566, 726
BspCNI	CTCAG	4 cut(s)	209, 489, 858, 953
BspLI	GGNNCC	2 cut(s)	567, 751
BspPI	GGATC	1 cut(s)	892
BspT107I	GGYRCC	1 cut(s)	749
BspTNI	GGTCTC	2 cut(s)	141, 832
BsrBI	CCGCTC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	763
BsrI	ACTGG	2 cut(s)	718, 886
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	3 cut(s)	568, 691, 753
BssMI	GATC	4 cut(s)	24, 118, 769, 884
BssNI	GRCGYC	2 cut(s)	183, 750
Bst2UI	CCWGG	4 cut(s)	34, 399, 441, 570
Bst4CI	ACNGT	2 cut(s)	356, 794
BstACI	GRCGYC	2 cut(s)	183, 750
BstAUI	TGTACA	1 cut(s)	763
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	4 cut(s)	196, 497, 866, 940
BstDSI	CCRYGG	1 cut(s)	753
BstEII	GGTNACC	1 cut(s)	476
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	2 cut(s)	424, 928
BstH2I	RGCGCY	1 cut(s)	753
BstHHI	GCGC	1 cut(s)	752
BstKTI	GATC	4 cut(s)	27, 121, 772, 887
BstMAI	GTCTC	5 cut(s)	123, 141, 332, 338, 832
BstMBI	GATC	4 cut(s)	24, 118, 769, 884
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	2 cut(s)	601, 861
BstNI	CCWGG	4 cut(s)	34, 399, 441, 570
BstPI	GGTNACC	1 cut(s)	476
BstSCI	CCNGG	5 cut(s)	32, 397, 439, 472, 568
BstV1I	GCAGC	8 cut(s)	70, 404, 407, 572, 613, 867, 870, 873
BstV2I	GAAGAC	1 cut(s)	364
Bsu36I	CCTNAGG	1 cut(s)	196
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	4 cut(s)	201, 402, 566, 726
BtgI	CCRYGG	1 cut(s)	753
BtsCI	GGATG	2 cut(s)	424, 928
Cac8I	GCNNGC	1 cut(s)	585
CfoI	GCGC	1 cut(s)	752
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	401, 565
CseI	GACGC	2 cut(s)	191, 702
Csp6I	GTAC	2 cut(s)	590, 764
CviAII	CATG	4 cut(s)	313, 634, 686, 986
CviQI	GTAC	2 cut(s)	590, 764
DdeI	CTNAG	4 cut(s)	196, 497, 866, 940
DinI	GGCGCC	1 cut(s)	751
DpnI	GATC	4 cut(s)	26, 120, 771, 886
DpnII	GATC	4 cut(s)	24, 118, 769, 884
DrdI	GACNNNNNNGTC	1 cut(s)	677
DseDI	GACNNNNNNGTC	1 cut(s)	677
EaeI	YGGCCR	1 cut(s)	724
EciI	GGCGGA	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	472
Eco31I	GGTCTC	2 cut(s)	141, 832
Eco53kI	GAGCTC	1 cut(s)	470
Eco81I	CCTNAGG	1 cut(s)	196
Eco91I	GGTNACC	1 cut(s)	476
EcoICRI	GAGCTC	1 cut(s)	470
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoO65I	GGTNACC	1 cut(s)	476
EcoRII	CCWGG	4 cut(s)	32, 397, 439, 568
EcoT38I	GRGCYC	1 cut(s)	472
EgeI	GGCGCC	1 cut(s)	751
EheI	GGCGCC	1 cut(s)	751
FaeI	CATG	4 cut(s)	316, 637, 689, 989
FaqI	GGGAC	2 cut(s)	321, 700
FatI	CATG	4 cut(s)	312, 633, 685, 985
FauI	CCCGC	2 cut(s)	751, 830
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	255
FokI	GGATG	2 cut(s)	411, 935
FriOI	GRGCYC	1 cut(s)	472
FspBI	CTAG	3 cut(s)	389, 708, 918
GlaI	GCGC	1 cut(s)	751
GsuI	CTGGAG	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	753
HaeIII	GGCC	4 cut(s)	201, 402, 566, 726
HapII	CCGG	3 cut(s)	74, 474, 824
HgaI	GACGC	2 cut(s)	191, 702
HhaI	GCGC	1 cut(s)	752
Hin1I	GRCGYC	2 cut(s)	183, 750
Hin1II	CATG	4 cut(s)	316, 637, 689, 989
Hin6I	GCGC	1 cut(s)	750
HinP1I	GCGC	1 cut(s)	750
HincII	GTYRAC	2 cut(s)	575, 879
HindII	GTYRAC	2 cut(s)	575, 879
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	2 cut(s)	88, 501
HpaII	CCGG	3 cut(s)	74, 474, 824
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	5 cut(s)	164, 256, 575, 764, 879
Hpy188I	TCNGA	4 cut(s)	429, 498, 735, 874
Hpy188III	TCNNGA	3 cut(s)	128, 888, 942
Hpy8I	GTNNAC	5 cut(s)	164, 256, 575, 764, 879
Hpy99I	CGWCG	4 cut(s)	25, 58, 179, 185
HpyAV	CCTTC	5 cut(s)	244, 540, 633, 654, 975
HpyCH4III	ACNGT	2 cut(s)	356, 794
HpyCH4V	TGCA	4 cut(s)	4, 288, 464, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	601, 861
HpyF3I	CTNAG	4 cut(s)	196, 497, 866, 940
Hsp92I	GRCGYC	2 cut(s)	183, 750
Hsp92II	CATG	4 cut(s)	316, 637, 689, 989
HspAI	GCGC	1 cut(s)	750
KasI	GGCGCC	1 cut(s)	749
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	24, 118, 769, 884
LmnI	GCTCC	5 cut(s)	400, 467, 475, 826, 914
Lsp1109I	GCAGC	8 cut(s)	70, 404, 407, 572, 613, 867, 870, 873
MaeI	CTAG	3 cut(s)	389, 708, 918
MaeIII	GTNAC	3 cut(s)	476, 698, 794
MalI	GATC	4 cut(s)	26, 120, 771, 886
MbiI	CCGCTC	1 cut(s)	395
MboI	GATC	4 cut(s)	24, 118, 769, 884
MboII	GAAGA	2 cut(s)	364, 639
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	3 cut(s)	361, 472, 823
MlsI	TGGCCA	1 cut(s)	726
MluCI	AATT	2 cut(s)	167, 459
MluNI	TGGCCA	1 cut(s)	726
Mly113I	GGCGCC	1 cut(s)	750
MmeI	TCCRAC	1 cut(s)	807
Mox20I	TGGCCA	1 cut(s)	726
MroXI	GAANNNNTTC	1 cut(s)	517
MscI	TGGCCA	1 cut(s)	726
MslI	CAYNNNNRTG	2 cut(s)	666, 735
Msp20I	TGGCCA	1 cut(s)	726
MspA1I	CMGCKG	2 cut(s)	367, 563
MspI	CCGG	3 cut(s)	74, 474, 824
MspR9I	CCNGG	5 cut(s)	34, 399, 441, 474, 570
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	4 cut(s)	34, 399, 441, 570
MwoI	GCNNNNNNNGC	2 cut(s)	601, 861
NarI	GGCGCC	1 cut(s)	750
NciI	CCSGG	1 cut(s)	474
NdeII	GATC	4 cut(s)	24, 118, 769, 884
NlaIII	CATG	4 cut(s)	316, 637, 689, 989
NlaIV	GGNNCC	2 cut(s)	567, 751
NmuCI	GTSAC	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	2 cut(s)	88, 501
PfoI	TCCNGGA	1 cut(s)	439
PluTI	GGCGCC	1 cut(s)	753
Psp124BI	GAGCTC	1 cut(s)	472
Psp6I	CCWGG	4 cut(s)	32, 397, 439, 568
PspEI	GGTNACC	1 cut(s)	476
PspGI	CCWGG	4 cut(s)	32, 397, 439, 568
PspN4I	GGNNCC	2 cut(s)	567, 751
PspPI	GGNCC	2 cut(s)	401, 565
PsrI	GAACNNNNNNTAC	2 cut(s)	256, 288
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	2 cut(s)	591, 765
RsaNI	GTAC	2 cut(s)	590, 764
RseI	CAYNNNNRTG	2 cut(s)	666, 735
SacI	GAGCTC	1 cut(s)	472
Sau3AI	GATC	4 cut(s)	24, 118, 769, 884
Sau96I	GGNCC	2 cut(s)	401, 565
ScrFI	CCNGG	5 cut(s)	34, 399, 441, 474, 570
SduI	GDGCHC	3 cut(s)	361, 472, 823
SfoI	GGCGCC	1 cut(s)	751
SmiMI	CAYNNNNRTG	2 cut(s)	666, 735
SmlI	CTYRAG	2 cut(s)	278, 294
SmoI	CTYRAG	2 cut(s)	278, 294
SpeI	ACTAGT	1 cut(s)	707
Sse9I	AATT	2 cut(s)	167, 459
SspDI	GGCGCC	1 cut(s)	749
SspMI	CTAG	3 cut(s)	389, 708, 918
SstI	GAGCTC	1 cut(s)	472
StyD4I	CCNGG	5 cut(s)	32, 397, 439, 472, 568
TaaI	ACNGT	2 cut(s)	356, 794
TaqI	TCGA	3 cut(s)	23, 127, 174
TaqII	GACCGA	2 cut(s)	165, 671
TasI	AATT	2 cut(s)	167, 459
TatI	WGTACW	1 cut(s)	763
TauI	GCSGC	3 cut(s)	222, 395, 566
TfiI	GAWTC	2 cut(s)	88, 501
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	8 cut(s)	58, 417, 420, 560, 601, 855, 858, 861
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	2 cut(s)	160, 329
TspGWI	ACGGA	1 cut(s)	42
XagI	CCTNNNNNAGG	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	3 cut(s)	389, 708, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.