Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Reverse (-)

28353258 .. 28356359

Gene Structure 3102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAATCCATTAGACCTGAACAACTTGCCTGATGATCATAATCGAGATAGAGATAGAGACAGAGAAAATGGTAAACAAATCATCGACGGCGACGCCTCCTCCTCCTCAGGCCATAGAAAAAAGAAAAGCGGCGGAAAAGATGGAAAAGACGAGAGTGGGAAGGTCTACGAGTGTAGGTTTTGTTCCCTCAAGTTCTGCAAATCTCAAGCTCTTGGGGGACACATGAACCGCCACCGCCAAGGCAAGGAGACAGAGACACTAAACCGTGCTCGTCAGCTCGTCTTCAACAACGATAACCTAGCCGCTCCTGGCCCTCCTCATTTAGGGTGCTGCCATCCGATGACACCTCCAGGAGGGTACCCCCACCCAATTGCAGGATCAGCTCCCGGTGACCCAACAGCATTGCCTCTGAGATTCCCTGCAAGAATGTTTTCTGGTTCTCCTTCCACACAACTCATACCTCCGCCACCAGCAGCCGCCCCAGGTCCACCACAGCCGCCGCAGCCCTACTTATACCCCTCTCCTTCACGCCCCATGTCCTCCTACCCTTCTTCACACTATCAACACCACAATGACTACTACGTCGGGCATGTCCTCGGCGGTAACAACACTAGTGCTTCCCAGTACGGCCATCATCTGAACTATGGCGCCGCGGCGGGTGCACAAGATCATCATCAGTCCACCAACAACAGCGGGTATAATAACTATACTTGTATTGGTGCTCCGGTCACGCATAGCGGAGGGTTTGGGCAAGGAAGTAGCAGCCTGAGTTCGGAAATGACTGGATCCGCAGGAGGAGGCGGGGTCGGTGGTGGAGCCAGGGATGCGTCGATGAACTACTCAGGAACACAGCCCCCTGCTCCTCCTTCCATCAACCGGTTTCAACATGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

31.52

Weight (kDa)

8.69

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	581
Acc65I	GGTACC	1 cut(s)	357
AccB1I	GGYRCC	2 cut(s)	357, 647
AccBSI	CCGCTC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	653
AclWI	GGATC	3 cut(s)	385, 780, 793
AcoI	YGGCCR	1 cut(s)	628
AcyI	GRCGYC	2 cut(s)	93, 648
AfaI	GTAC	2 cut(s)	359, 626
AfiI	CCNNNNNNNGG	6 cut(s)	244, 323, 353, 374, 772, 876
AgeI	ACCGGT	1 cut(s)	876
AgsI	TTSAA	2 cut(s)	286, 884
AhlI	ACTAGT	1 cut(s)	611
AjnI	CCWGG	4 cut(s)	307, 349, 481, 818
AluBI	AGCT	3 cut(s)	209, 277, 383
AluI	AGCT	3 cut(s)	209, 277, 383
Alw21I	GWGCWC	3 cut(s)	271, 664, 724
Alw26I	GTCTC	3 cut(s)	51, 242, 248
Alw44I	GTGCAC	1 cut(s)	660
AlwI	GGATC	3 cut(s)	385, 780, 793
AoxI	GGCC	3 cut(s)	109, 310, 628
ApaLI	GTGCAC	1 cut(s)	660
ApeKI	GCWGC	4 cut(s)	330, 473, 502, 762
AsiGI	ACCGGT	1 cut(s)	876
Asp700I	GAANNNNTTC	1 cut(s)	430
Asp718I	GGTACC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	2 cut(s)	311, 485
AsuC2I	CCSGG	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	664
BamHI	GGATCC	1 cut(s)	785
BanI	GGYRCC	2 cut(s)	357, 647
BbsI	GAAGAC	1 cut(s)	274
Bbv12I	GWGCWC	3 cut(s)	271, 664, 724
BbvI	GCAGC	4 cut(s)	317, 485, 514, 774
BccI	CCATC	4 cut(s)	134, 342, 639, 878
BceAI	ACGGC	2 cut(s)	103, 643
BciT130I	CCWGG	4 cut(s)	309, 351, 483, 820
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	3 cut(s)	51, 242, 248
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	2 cut(s)	299, 612
BfoI	RGCGCY	1 cut(s)	651
Bme1390I	CCNGG	5 cut(s)	309, 351, 387, 483, 820
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	311, 485
BmiI	GGNNCC	4 cut(s)	359, 649, 787, 817
BmrFI	CCNGG	5 cut(s)	309, 351, 387, 483, 820
BmrI	ACTGGG	1 cut(s)	616
BmsI	GCATC	1 cut(s)	814
BmuI	ACTGGG	1 cut(s)	616
BpiI	GAAGAC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	2 cut(s)	173, 189
BpuMI	CCSGG	1 cut(s)	387
BsaBI	GATNNNNATC	2 cut(s)	39, 672
BsaHI	GRCGYC	2 cut(s)	93, 648
BsaJI	CCNNGG	5 cut(s)	238, 481, 595, 651, 819
BsaWI	WCCGGW	2 cut(s)	724, 876
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 789, 819
Bsc4I	CCNNNNNNNGG	6 cut(s)	244, 323, 353, 374, 772, 876
Bse118I	RCCGGY	1 cut(s)	876
Bse1I	ACTGG	2 cut(s)	622, 787
Bse21I	CCTNAGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	401
Bse8I	GATNNNNATC	2 cut(s)	39, 672
BseBI	CCWGG	4 cut(s)	309, 351, 483, 820
BseDI	CCNNGG	5 cut(s)	238, 481, 595, 651, 819
BseGI	GGATG	2 cut(s)	334, 829
BseJI	GATNNNNATC	2 cut(s)	39, 672
BseLI	CCNNNNNNNGG	6 cut(s)	244, 323, 353, 374, 772, 876
BseMI	GCAATG	1 cut(s)	401
BseMII	CTCAG	4 cut(s)	120, 401, 758, 855
BseNI	ACTGG	2 cut(s)	622, 787
BseRI	GAGGAG	6 cut(s)	88, 91, 94, 306, 810, 852
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	4 cut(s)	317, 485, 514, 774
Bsh1236I	CGCG	1 cut(s)	653
BshFI	GGCC	3 cut(s)	111, 312, 630
BshNI	GGYRCC	2 cut(s)	357, 647
BshTI	ACCGGT	1 cut(s)	876
BsiHKAI	GWGCWC	3 cut(s)	271, 664, 724
BsiSI	CCGG	3 cut(s)	387, 725, 877
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	6 cut(s)	244, 323, 353, 374, 772, 876
BsmAI	GTCTC	3 cut(s)	51, 242, 248
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	3 cut(s)	111, 312, 630
Bsp1286I	GDGCHC	3 cut(s)	271, 664, 724
Bsp143I	GATC	4 cut(s)	34, 377, 667, 785
BspANI	GGCC	3 cut(s)	111, 312, 630
BspCNI	CTCAG	4 cut(s)	119, 402, 759, 854
BspFNI	CGCG	1 cut(s)	653
BspLI	GGNNCC	4 cut(s)	359, 649, 787, 817
BspPI	GGATC	3 cut(s)	385, 780, 793
BspT107I	GGYRCC	2 cut(s)	357, 647
BsrBI	CCGCTC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	876
BsrI	ACTGG	2 cut(s)	622, 787
BssAI	RCCGGY	1 cut(s)	876
BssECI	CCNNGG	5 cut(s)	238, 481, 595, 651, 819
BssMI	GATC	4 cut(s)	34, 377, 667, 785
BssNI	GRCGYC	2 cut(s)	93, 648
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	4 cut(s)	309, 351, 483, 820
Bst4CI	ACNGT	1 cut(s)	266
BstACI	GRCGYC	2 cut(s)	93, 648
BstDEI	CTNAG	4 cut(s)	106, 410, 767, 841
BstDSI	CCRYGG	1 cut(s)	651
BstEII	GGTNACC	1 cut(s)	389
BstENI	CCTNNNNNAGG	2 cut(s)	321, 351
BstF5I	GGATG	2 cut(s)	334, 829
BstFNI	CGCG	1 cut(s)	653
BstH2I	RGCGCY	1 cut(s)	651
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	4 cut(s)	37, 380, 670, 788
BstMAI	GTCTC	3 cut(s)	51, 242, 248
BstMBI	GATC	4 cut(s)	34, 377, 667, 785
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 502, 659, 824
BstNI	CCWGG	4 cut(s)	309, 351, 483, 820
BstNSI	RCATGY	1 cut(s)	593
BstPI	GGTNACC	1 cut(s)	389
BstSCI	CCNGG	5 cut(s)	307, 349, 385, 481, 818
BstSLI	GKGCMC	1 cut(s)	664
BstUI	CGCG	1 cut(s)	653
BstV1I	GCAGC	4 cut(s)	317, 485, 514, 774
BstV2I	GAAGAC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	785
Bsu36I	CCTNAGG	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	111, 312, 630
BtgI	CCRYGG	1 cut(s)	651
BtsCI	GGATG	2 cut(s)	334, 829
CfoI	GCGC	1 cut(s)	650
Cfr10I	RCCGGY	1 cut(s)	876
Cfr13I	GGNCC	2 cut(s)	311, 485
Cfr42I	CCGCGG	1 cut(s)	654
CseI	GACGC	2 cut(s)	101, 816
Csp6I	GTAC	2 cut(s)	358, 625
CspAI	ACCGGT	1 cut(s)	876
CviAII	CATG	4 cut(s)	223, 535, 590, 887
CviQI	GTAC	2 cut(s)	358, 625
DdeI	CTNAG	4 cut(s)	106, 410, 767, 841
DinI	GGCGCC	1 cut(s)	649
DpnI	GATC	4 cut(s)	36, 379, 669, 787
DpnII	GATC	4 cut(s)	34, 377, 667, 785
DrdI	GACNNNNNNGTC	1 cut(s)	581
DseDI	GACNNNNNNGTC	1 cut(s)	581
EaeI	YGGCCR	1 cut(s)	628
EciI	GGCGGA	2 cut(s)	147, 453
Eco130I	CCWWGG	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	485
Eco81I	CCTNAGG	1 cut(s)	106
Eco91I	GGTNACC	1 cut(s)	389
EcoNI	CCTNNNNNAGG	2 cut(s)	321, 351
EcoO65I	GGTNACC	1 cut(s)	389
EcoRII	CCWGG	4 cut(s)	307, 349, 481, 818
EcoT14I	CCWWGG	1 cut(s)	238
EgeI	GGCGCC	1 cut(s)	649
EheI	GGCGCC	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	4 cut(s)	226, 538, 593, 890
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	4 cut(s)	222, 534, 589, 886
FauI	CCCGC	3 cut(s)	649, 686, 794
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	2 cut(s)	321, 836
FspBI	CTAG	2 cut(s)	299, 612
GlaI	GCGC	1 cut(s)	649
GsuI	CTGGAG	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	651
HaeIII	GGCC	3 cut(s)	111, 312, 630
HapII	CCGG	3 cut(s)	387, 725, 877
HgaI	GACGC	2 cut(s)	101, 816
HhaI	GCGC	1 cut(s)	650
Hin1I	GRCGYC	2 cut(s)	93, 648
Hin1II	CATG	4 cut(s)	226, 538, 593, 890
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	2 cut(s)	4, 414
HpaII	CCGG	3 cut(s)	387, 725, 877
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	5 cut(s)	74, 166, 488, 662, 681
Hpy188I	TCNGA	4 cut(s)	339, 411, 639, 775
Hpy188III	TCNNGA	2 cut(s)	44, 843
Hpy8I	GTNNAC	5 cut(s)	74, 166, 488, 662, 681
Hpy99I	CGWCG	4 cut(s)	89, 95, 587, 832
HpyAV	CCTTC	5 cut(s)	154, 453, 534, 558, 876
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	4 cut(s)	198, 374, 422, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 502, 659, 824
HpyF3I	CTNAG	4 cut(s)	106, 410, 767, 841
HpySE526I	ACGT	1 cut(s)	582
Hsp92I	GRCGYC	2 cut(s)	93, 648
Hsp92II	CATG	4 cut(s)	226, 538, 593, 890
HspAI	GCGC	1 cut(s)	648
KasI	GGCGCC	1 cut(s)	647
KpnI	GGTACC	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	34
KspI	CCGCGG	1 cut(s)	654
Kzo9I	GATC	4 cut(s)	34, 377, 667, 785
LmnI	GCTCC	5 cut(s)	310, 388, 727, 815, 865
Lsp1109I	GCAGC	4 cut(s)	317, 485, 514, 774
LweI	GCATC	1 cut(s)	814
MaeI	CTAG	2 cut(s)	299, 612
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	3 cut(s)	389, 602, 727
MalI	GATC	4 cut(s)	36, 379, 669, 787
MbiI	CCGCTC	1 cut(s)	305
MboI	GATC	4 cut(s)	34, 377, 667, 785
MboII	GAAGA	2 cut(s)	274, 543
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	785
MhlI	GDGCHC	3 cut(s)	271, 664, 724
MluCI	AATT	1 cut(s)	369
Mly113I	GGCGCC	1 cut(s)	648
MroXI	GAANNNNTTC	1 cut(s)	430
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	2 cut(s)	653, 693
MspI	CCGG	3 cut(s)	387, 725, 877
MspR9I	CCNGG	5 cut(s)	309, 351, 387, 483, 820
MunI	CAATTG	1 cut(s)	369
MvaI	CCWGG	4 cut(s)	309, 351, 483, 820
MvnI	CGCG	1 cut(s)	653
MwoI	GCNNNNNNNGC	4 cut(s)	380, 502, 659, 824
NarI	GGCGCC	1 cut(s)	648
NciI	CCSGG	1 cut(s)	387
NdeII	GATC	4 cut(s)	34, 377, 667, 785
NlaIII	CATG	4 cut(s)	226, 538, 593, 890
NlaIV	GGNNCC	4 cut(s)	359, 649, 787, 817
NmeAIII	GCCGAG	1 cut(s)	576
NmuCI	GTSAC	2 cut(s)	389, 727
NspI	RCATGY	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	4, 414
PfoI	TCCNGGA	1 cut(s)	349
PinAI	ACCGGT	1 cut(s)	876
PluTI	GGCGCC	1 cut(s)	651
Psp6I	CCWGG	4 cut(s)	307, 349, 481, 818
PspEI	GGTNACC	1 cut(s)	389
PspGI	CCWGG	4 cut(s)	307, 349, 481, 818
PspN4I	GGNNCC	4 cut(s)	359, 649, 787, 817
PspPI	GGNCC	2 cut(s)	311, 485
PsrI	GAACNNNNNNTAC	2 cut(s)	166, 198
PsuI	RGATCY	1 cut(s)	785
RsaI	GTAC	2 cut(s)	359, 626
RsaNI	GTAC	2 cut(s)	358, 625
RseI	CAYNNNNRTG	1 cut(s)	570
SacII	CCGCGG	1 cut(s)	654
Sau3AI	GATC	4 cut(s)	34, 377, 667, 785
Sau96I	GGNCC	2 cut(s)	311, 485
ScrFI	CCNGG	5 cut(s)	309, 351, 387, 483, 820
SduI	GDGCHC	3 cut(s)	271, 664, 724
SfaNI	GCATC	1 cut(s)	814
SfoI	GGCGCC	1 cut(s)	649
Sfr303I	CCGCGG	1 cut(s)	654
SgrBI	CCGCGG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	188, 204
SmoI	CTYRAG	2 cut(s)	188, 204
SpeI	ACTAGT	1 cut(s)	611
Sse9I	AATT	1 cut(s)	369
SspDI	GGCGCC	1 cut(s)	647
SspMI	CTAG	2 cut(s)	299, 612
StyD4I	CCNGG	5 cut(s)	307, 349, 385, 481, 818
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	3 cut(s)	43, 84, 830
TasI	AATT	1 cut(s)	369
TauI	GCSGC	7 cut(s)	132, 305, 479, 499, 502, 653, 656
TfiI	GAWTC	2 cut(s)	4, 414
TseFI	GTSAC	2 cut(s)	389, 727
TseI	GCWGC	4 cut(s)	330, 473, 502, 762
Tsp45I	GTSAC	2 cut(s)	389, 727
TspDTI	ATGAA	3 cut(s)	17, 239, 848
VneI	GTGCAC	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	485
XagI	CCTNNNNNAGG	2 cut(s)	321, 351
XceI	RCATGY	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	430
XspI	CTAG	2 cut(s)	299, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.