Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Reverse (-)

25684314 .. 25686195

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGGCATGAGGAGAATTACTTAGACCTCAACAATCTTCCAGATGATTTTTCTAAAGATGGCAATAAGCAAGCCCTCGAGGAAGGTTCTTCCTCTGGTCAAAGAAAGAAGAAAGGGAGTAAAGAAGGGAAAGATGAGAGTGGGAAAGTGTACGAATGTCGATTTTGTTCACTCAAGTTCTGCAAATCCCAAGCTCTTGGTGGCCACATGAATCGCCACCGACAAGAGAGGGAGACCGAGACATTGAATCAAGCTCGTCAATTGGTCTACCGTAACGATACCATAACCCCACCTGGAATTTCTCCTTTCGGCTATCATCATACCACAGATCCAACAATATACCGGTCGGTTTACTCATCACCAATGATATATCCTGGAAGCTCTTCAACGAACTTGGTTCCGCAACCGCCGATGCCACCACCACCGCCTCCATATCCATACTCTTCAAACCAATACTCTCCTCACAACCACTTCAACGACTACTACTTAAACCCATCTTTTAGAGGCAGCAGAAGCATCTCTCCAAGTCCTAACCTCCCCACCACCACCACCGTTGATTACATGGCCGATAGTCCCGTGGAACCGGGCTACACTTGTGTTGGTGCACCCATTGGTCCGACCGGTTTCCCTATCCGTGGCCCAAGCATCGTCCGTGCGCCGCTTGAACCACCACAAGGTCGTGATGGTGACGCTTCACGACAGCGTTTGGATCACTCTCTTAGGTTCCCCATCAATCGGTTTCAAGATCATCACTCGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

28.38

Weight (kDa)

8.28

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	4 cut(s)	401, 407, 425, 659
AclWI	GGATC	2 cut(s)	323, 717
AcoI	YGGCCR	2 cut(s)	202, 564
AcsI	RAATTY	1 cut(s)	297
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	635, 674, 735
AgeI	ACCGGT	2 cut(s)	342, 620
AgsI	TTSAA	6 cut(s)	247, 387, 447, 475, 665, 743
AjnI	CCWGG	2 cut(s)	292, 373
AluBI	AGCT	3 cut(s)	194, 254, 381
AluI	AGCT	3 cut(s)	194, 254, 381
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	2 cut(s)	227, 233
Alw44I	GTGCAC	1 cut(s)	603
AlwI	GGATC	2 cut(s)	323, 717
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	3 cut(s)	202, 564, 637
ApaLI	GTGCAC	1 cut(s)	603
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	1 cut(s)	297
AsiGI	ACCGGT	2 cut(s)	342, 620
Asp700I	GAANNNNTTC	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	658
AspS9I	GGNCC	2 cut(s)	614, 638
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	2 cut(s)	351, 698
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	614
BaeGI	GKGCMC	1 cut(s)	607
BalI	TGGCCA	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	1 cut(s)	519
BccI	CCATC	4 cut(s)	53, 502, 677, 737
BciT130I	CCWGG	2 cut(s)	294, 375
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	2 cut(s)	227, 233
BisI	GCNGC	2 cut(s)	508, 659
BlsI	GCNGC	2 cut(s)	509, 660
Bme1390I	CCNGG	3 cut(s)	294, 375, 585
Bme18I	GGWCC	1 cut(s)	614
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	614, 638
BmiI	GGNNCC	3 cut(s)	399, 582, 725
BmrFI	CCNGG	3 cut(s)	294, 375, 585
BmsI	GCATC	3 cut(s)	402, 525, 654
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	576, 634
BsaWI	WCCGGW	2 cut(s)	342, 620
Bsc4I	CCNNNNNNNGG	3 cut(s)	635, 674, 735
Bse118I	RCCGGY	2 cut(s)	342, 620
BseBI	CCWGG	2 cut(s)	294, 375
BseDI	CCNNGG	2 cut(s)	576, 634
BseLI	CCNNNNNNNGG	3 cut(s)	635, 674, 735
BseRI	GAGGAG	2 cut(s)	26, 450
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	1 cut(s)	519
Bsh1285I	CGRYCG	2 cut(s)	347, 621
BshFI	GGCC	3 cut(s)	204, 566, 639
BshTI	ACCGGT	2 cut(s)	342, 620
BsiEI	CGRYCG	2 cut(s)	347, 621
BsiHKAI	GWGCWC	1 cut(s)	607
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	343, 584, 621
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	3 cut(s)	635, 674, 735
BsmAI	GTCTC	2 cut(s)	227, 233
BsmFI	GGGAC	1 cut(s)	558
BsnI	GGCC	3 cut(s)	204, 566, 639
Bso31I	GGTCTC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	3 cut(s)	328, 709, 745
BspACI	CCGC	4 cut(s)	401, 407, 425, 659
BspANI	GGCC	3 cut(s)	204, 566, 639
BspLI	GGNNCC	3 cut(s)	399, 582, 725
BspPI	GGATC	2 cut(s)	323, 717
BspQI	GCTCTTC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	227
BsrFI	RCCGGY	2 cut(s)	342, 620
BssAI	RCCGGY	2 cut(s)	342, 620
BssECI	CCNNGG	2 cut(s)	576, 634
BssMI	GATC	3 cut(s)	328, 709, 745
Bst2UI	CCWGG	2 cut(s)	294, 375
Bst4CI	ACNGT	2 cut(s)	272, 553
Bst6I	CTCTTC	2 cut(s)	388, 448
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	22, 719
BstDSI	CCRYGG	2 cut(s)	576, 634
BstHHI	GCGC	1 cut(s)	658
BstKTI	GATC	3 cut(s)	331, 712, 748
BstMAI	GTCTC	2 cut(s)	227, 233
BstMBI	GATC	3 cut(s)	328, 709, 745
BstMCI	CGRYCG	2 cut(s)	347, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	513
BstNI	CCWGG	2 cut(s)	294, 375
BstSCI	CCNGG	3 cut(s)	292, 373, 583
BstSLI	GKGCMC	1 cut(s)	607
BstV1I	GCAGC	1 cut(s)	519
BstX2I	RGATCY	1 cut(s)	328
BstXI	CCANNNNNNTGG	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	204, 566, 639
BtgI	CCRYGG	2 cut(s)	576, 634
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	658
Cfr10I	RCCGGY	2 cut(s)	342, 620
Cfr13I	GGNCC	2 cut(s)	614, 638
CseI	GACGC	1 cut(s)	698
Csp6I	GTAC	1 cut(s)	151
CspAI	ACCGGT	2 cut(s)	342, 620
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviAII	CATG	3 cut(s)	8, 208, 562
CviJI	RGCY	9 cut(s)	74, 194, 204, 254, 312, 381, 566, 588, 639
CviKI_1	RGCY	9 cut(s)	74, 194, 204, 254, 312, 381, 566, 588, 639
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	22, 719
DpnI	GATC	3 cut(s)	330, 711, 747
DpnII	GATC	3 cut(s)	328, 709, 745
EaeI	YGGCCR	2 cut(s)	202, 564
Eam1104I	CTCTTC	2 cut(s)	388, 448
EarI	CTCTTC	2 cut(s)	388, 448
Eco31I	GGTCTC	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	292, 373
FaeI	CATG	3 cut(s)	11, 211, 565
FaiI	YATR	9 cut(s)	9, 209, 284, 321, 340, 370, 433, 439, 563
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	3 cut(s)	7, 207, 561
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	508, 659
Fsp4HI	GCNGC	2 cut(s)	508, 659
GlaI	GCGC	1 cut(s)	657
GluI	GCNGC	2 cut(s)	508, 659
HaeIII	GGCC	3 cut(s)	204, 566, 639
HapII	CCGG	3 cut(s)	343, 584, 621
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	1 cut(s)	658
Hin1II	CATG	3 cut(s)	11, 211, 565
Hin6I	GCGC	1 cut(s)	656
HinP1I	GCGC	1 cut(s)	656
HinfI	GANTC	2 cut(s)	211, 247
HpaII	CCGG	3 cut(s)	343, 584, 621
HphI	GGTGA	2 cut(s)	351, 698
Hpy166II	GTNNAC	5 cut(s)	151, 170, 268, 352, 605
Hpy188I	TCNGA	2 cut(s)	618, 761
Hpy188III	TCNNGA	4 cut(s)	41, 680, 696, 743
Hpy8I	GTNNAC	5 cut(s)	151, 170, 268, 352, 605
HpyAV	CCTTC	2 cut(s)	77, 119
HpyCH4III	ACNGT	2 cut(s)	272, 553
HpyCH4V	TGCA	2 cut(s)	183, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	513
HpyF3I	CTNAG	2 cut(s)	22, 719
Hsp92II	CATG	3 cut(s)	11, 211, 565
HspAI	GCGC	1 cut(s)	656
Kzo9I	GATC	3 cut(s)	328, 709, 745
LguI	GCTCTTC	1 cut(s)	388
LpnPI	CCDG	9 cut(s)	54, 81, 279, 306, 356, 360, 387, 597, 634
Lsp1109I	GCAGC	1 cut(s)	519
LweI	GCATC	3 cut(s)	402, 525, 654
MaeIII	GTNAC	2 cut(s)	272, 686
MalI	GATC	3 cut(s)	330, 711, 747
MboI	GATC	3 cut(s)	328, 709, 745
MboII	GAAGA	5 cut(s)	29, 81, 121, 375, 435
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	607
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	3 cut(s)	16, 260, 297
MluNI	TGGCCA	1 cut(s)	204
MmeI	TCCRAC	2 cut(s)	356, 641
Mox20I	TGGCCA	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	1 cut(s)	488
Msp20I	TGGCCA	1 cut(s)	204
MspI	CCGG	3 cut(s)	343, 584, 621
MspR9I	CCNGG	3 cut(s)	294, 375, 585
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	2 cut(s)	294, 375
MwoI	GCNNNNNNNGC	1 cut(s)	513
NciI	CCSGG	1 cut(s)	585
NdeII	GATC	3 cut(s)	328, 709, 745
NlaIII	CATG	3 cut(s)	11, 211, 565
NlaIV	GGNNCC	3 cut(s)	399, 582, 725
NmuCI	GTSAC	1 cut(s)	686
PaeR7I	CTCGAG	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	211, 247
PfoI	TCCNGGA	1 cut(s)	373
PinAI	ACCGGT	2 cut(s)	342, 620
PkrI	GCNGC	2 cut(s)	509, 660
Psp6I	CCWGG	2 cut(s)	292, 373
PspGI	CCWGG	2 cut(s)	292, 373
PspN4I	GGNNCC	3 cut(s)	399, 582, 725
PspPI	GGNCC	2 cut(s)	614, 638
PspXI	VCTCGAGB	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	2 cut(s)	508, 659
Sau3AI	GATC	3 cut(s)	328, 709, 745
Sau96I	GGNCC	2 cut(s)	614, 638
ScrFI	CCNGG	3 cut(s)	294, 375, 585
SduI	GDGCHC	1 cut(s)	607
SetI	ASST	9 cut(s)	30, 88, 196, 256, 295, 383, 537, 679, 725
SfaNI	GCATC	3 cut(s)	402, 525, 654
Sfr274I	CTCGAG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	614
SlaI	CTCGAG	1 cut(s)	77
SmlI	CTYRAG	2 cut(s)	77, 173
SmoI	CTYRAG	2 cut(s)	77, 173
Sse9I	AATT	3 cut(s)	16, 260, 297
SsiI	CCGC	4 cut(s)	401, 407, 425, 659
StyD4I	CCNGG	3 cut(s)	292, 373, 583
TaaI	ACNGT	2 cut(s)	272, 553
TaqI	TCGA	2 cut(s)	78, 160
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	3 cut(s)	16, 260, 297
TauI	GCSGC	1 cut(s)	661
TfiI	GAWTC	2 cut(s)	211, 247
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	2 cut(s)	623, 641
VneI	GTGCAC	1 cut(s)	603
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	1 cut(s)	297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.