Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Reverse (-)

2974897 .. 2976460

Gene Structure 1564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1042200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATTGAGGGGTTTCACATAGTTGCAGGCAGCTACAGAAAAAAGAAAAACGGCGCAAAAGATGGAAAGGACGAGAGTGGGAAGGTCTACGAGTGTAGGTTTTGCTCCCTCAAGTTCTGCAAATCCCAGGCCCTCGGGGGACACATGAACCGCCACCGTCAAGAAAGGGAGACAGAACAACTAAACAGGGCTCGTCGGTTGGTTTTCAATAACGATAACCTAGCCGCCCCTCCTCCTCACCTAGGATGCTGCCATCCGATTCCACCAGGAGGGTATCATCATACGGCTGCTGCAGGTAACAACATTGGTGGTGCTGATCCAACATTACCTCTCAGATTTCCACCAAGAATGTTTTCTGCCTCTTCATCAAACACCCTTATACCACCGCCATTGCCACCGCAGCTAGGTGTACAAGTACAACCCCCTCAACCCTACTTATATCCGTCTCCGTCACGGCCCATGCCCTTCCCTACTTCTTCGCACTACCCTCATCATCAAGTCAATGACTATTATGTTGGACATGTTCTTAGCAACAATACTCGCACTCCTTCATACGGGCATCCAAATGTGAACTACGGAGTGGCACCGGCGGAGTCCACCAACTACACTTGCATTGGAGCGCCTGTGGGACCAGGAAGAGGTGGAGGTGGAGGTGGTTGTAGTGGTCGTGGTCGTGGTAGAGACGAATCGCTGCACGTGAATCAGGAAGAAGCATTGAATTGGAGCAGGAGCTACGCAGGGACTCCTCCTTCGATCAATCGATTTCAACATGGCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

28.1

Weight (kDa)

9.39

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	5 cut(s)	151, 225, 386, 398, 590
AclWI	GGATC	1 cut(s)	311
AcvI	CACGTG	1 cut(s)	697
AfaI	GTAC	2 cut(s)	411, 417
AfiI	CCNNNNNNNGG	5 cut(s)	242, 269, 404, 554, 638
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	208, 718, 767
AjnI	CCWGG	3 cut(s)	126, 265, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	337, 369
AluBI	AGCT	3 cut(s)	33, 403, 732
AluI	AGCT	3 cut(s)	33, 403, 732
Alw26I	GTCTC	3 cut(s)	164, 450, 675
AlwI	GGATC	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	129, 455
ApeKI	GCWGC	6 cut(s)	30, 249, 287, 290, 400, 691
ArsI	GACNNNNNNTTYG	2 cut(s)	733, 765
Asp700I	GAANNNNTTC	1 cut(s)	352
AspA2I	CCTAGG	1 cut(s)	241
AspLEI	GCGC	2 cut(s)	56, 622
AspS9I	GGNCC	3 cut(s)	130, 456, 629
AsuHPI	GGTGA	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	629
AvrII	CCTAGG	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	193
BbrPI	CACGTG	1 cut(s)	697
BbvI	GCAGC	6 cut(s)	42, 236, 274, 277, 412, 678
BccI	CCATC	2 cut(s)	56, 261
BceAI	ACGGC	3 cut(s)	67, 300, 470
BciT130I	CCWGG	3 cut(s)	128, 267, 633
BcoDI	GTCTC	3 cut(s)	164, 450, 675
BfaI	CTAG	3 cut(s)	221, 242, 404
BfmI	CTRYAG	2 cut(s)	34, 291
BfoI	RGCGCY	1 cut(s)	623
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	7 cut(s)	31, 225, 250, 288, 291, 401, 692
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	7 cut(s)	32, 226, 251, 289, 292, 402, 693
Bme1390I	CCNGG	3 cut(s)	128, 267, 633
Bme18I	GGWCC	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	3 cut(s)	130, 456, 629
BmiI	GGNNCC	3 cut(s)	585, 630, 775
BmrFI	CCNGG	3 cut(s)	128, 267, 633
BmsI	GCATC	2 cut(s)	236, 568
BpuEI	CTTGAG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	760
BsaAI	YACGTR	1 cut(s)	697
BsaJI	CCNNGG	3 cut(s)	126, 133, 241
BsaXI	ACNNNNNCTCC	4 cut(s)	529, 559, 609, 639
Bsc4I	CCNNNNNNNGG	5 cut(s)	242, 269, 404, 554, 638
Bse118I	RCCGGY	1 cut(s)	586
Bse3DI	GCAATG	1 cut(s)	389
BseBI	CCWGG	3 cut(s)	128, 267, 633
BseCI	ATCGAT	1 cut(s)	760
BseDI	CCNNGG	3 cut(s)	126, 133, 241
BseGI	GGATG	3 cut(s)	251, 253, 559
BseLI	CCNNNNNNNGG	5 cut(s)	242, 269, 404, 554, 638
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	346
BseRI	GAGGAG	3 cut(s)	222, 225, 735
BseXI	GCAGC	6 cut(s)	42, 236, 274, 277, 412, 678
BsgI	GTGCAG	1 cut(s)	677
BshFI	GGCC	2 cut(s)	131, 457
BshNI	GGYRCC	1 cut(s)	583
BshVI	ATCGAT	1 cut(s)	760
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	587
BslFI	GGGAC	3 cut(s)	153, 642, 754
BslI	CCNNNNNNNGG	5 cut(s)	242, 269, 404, 554, 638
BsmAI	GTCTC	3 cut(s)	164, 450, 675
BsmBI	CGTCTC	2 cut(s)	450, 675
BsmFI	GGGAC	3 cut(s)	153, 642, 754
BsnI	GGCC	2 cut(s)	131, 457
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	316, 753
BspACI	CCGC	5 cut(s)	151, 225, 386, 398, 590
BspANI	GGCC	2 cut(s)	131, 457
BspCNI	CTCAG	1 cut(s)	345
BspDI	ATCGAT	1 cut(s)	760
BspLI	GGNNCC	3 cut(s)	585, 630, 775
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	586
BsrGI	TGTACA	1 cut(s)	409
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	3 cut(s)	126, 133, 241
BssMI	GATC	2 cut(s)	316, 753
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	3 cut(s)	128, 267, 633
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	2 cut(s)	367, 631
BstAUI	TGTACA	1 cut(s)	409
BstBAI	YACGTR	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	332, 527
BstENI	CCTNNNNNAGG	1 cut(s)	240
BstF5I	GGATG	3 cut(s)	251, 253, 559
BstH2I	RGCGCY	1 cut(s)	623
BstHHI	GCGC	2 cut(s)	56, 622
BstKTI	GATC	2 cut(s)	319, 756
BstMAI	GTCTC	3 cut(s)	164, 450, 675
BstMBI	GATC	2 cut(s)	316, 753
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNI	CCWGG	3 cut(s)	128, 267, 633
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	3 cut(s)	126, 265, 631
BstSFI	CTRYAG	2 cut(s)	34, 291
BstV1I	GCAGC	6 cut(s)	42, 236, 274, 277, 412, 678
Bsu15I	ATCGAT	1 cut(s)	760
BsuRI	GGCC	2 cut(s)	131, 457
BsuTUI	ATCGAT	1 cut(s)	760
BtsCI	GGATG	3 cut(s)	251, 253, 559
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	2 cut(s)	56, 622
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	3 cut(s)	130, 456, 629
ClaI	ATCGAT	1 cut(s)	760
Csp6I	GTAC	2 cut(s)	410, 416
CspCI	CAANNNNNGTGG	4 cut(s)	289, 324, 372, 407
CviAII	CATG	4 cut(s)	145, 460, 521, 770
CviJI	RGCY	9 cut(s)	33, 131, 191, 224, 287, 403, 457, 732, 774
CviKI_1	RGCY	9 cut(s)	33, 131, 191, 224, 287, 403, 457, 732, 774
CviQI	GTAC	2 cut(s)	410, 416
DdeI	CTNAG	2 cut(s)	332, 527
DpnI	GATC	2 cut(s)	318, 755
DpnII	GATC	2 cut(s)	316, 753
Eam1104I	CTCTTC	2 cut(s)	367, 631
EarI	CTCTTC	2 cut(s)	367, 631
EciI	GGCGGA	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	629
Eco72I	CACGTG	1 cut(s)	697
Eco88I	CYCGRG	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	3 cut(s)	126, 265, 631
EcoT14I	CCWWGG	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	241
Esp3I	CGTCTC	2 cut(s)	450, 675
FaeI	CATG	4 cut(s)	148, 463, 524, 773
FaqI	GGGAC	3 cut(s)	153, 642, 754
FatI	CATG	4 cut(s)	144, 459, 520, 769
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	7 cut(s)	31, 225, 250, 288, 291, 401, 692
FokI	GGATG	3 cut(s)	240, 258, 546
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	7 cut(s)	31, 225, 250, 288, 291, 401, 692
FspBI	CTAG	3 cut(s)	221, 242, 404
GlaI	GCGC	2 cut(s)	55, 621
GluI	GCNGC	7 cut(s)	31, 225, 250, 288, 291, 401, 692
HaeII	RGCGCY	1 cut(s)	623
HaeIII	GGCC	2 cut(s)	131, 457
HapII	CCGG	1 cut(s)	587
HhaI	GCGC	2 cut(s)	56, 622
Hin1II	CATG	4 cut(s)	148, 463, 524, 773
Hin6I	GCGC	2 cut(s)	54, 620
HinP1I	GCGC	2 cut(s)	54, 620
HinfI	GANTC	5 cut(s)	259, 593, 686, 700, 742
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	4 cut(s)	88, 410, 571, 597
Hpy188I	TCNGA	2 cut(s)	258, 335
Hpy188III	TCNNGA	2 cut(s)	161, 704
Hpy8I	GTNNAC	4 cut(s)	88, 410, 571, 597
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	4 cut(s)	76, 475, 558, 759
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	5 cut(s)	26, 120, 293, 612, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	2 cut(s)	332, 527
HpySE526I	ACGT	1 cut(s)	696
Hsp92II	CATG	4 cut(s)	148, 463, 524, 773
HspAI	GCGC	2 cut(s)	54, 620
Kzo9I	GATC	2 cut(s)	316, 753
LmnI	GCTCC	5 cut(s)	110, 617, 723, 729, 779
Lsp1109I	GCAGC	6 cut(s)	42, 236, 274, 277, 412, 678
LweI	GCATC	2 cut(s)	236, 568
MaeI	CTAG	3 cut(s)	221, 242, 404
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	2 cut(s)	296, 450
MalI	GATC	2 cut(s)	318, 755
MboI	GATC	2 cut(s)	316, 753
MboII	GAAGA	4 cut(s)	354, 468, 648, 719
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	718
MlyI	GAGTC	2 cut(s)	602, 736
MmeI	TCCRAC	2 cut(s)	344, 496
MroXI	GAANNNNTTC	1 cut(s)	352
MslI	CAYNNNNRTG	1 cut(s)	564
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	3 cut(s)	128, 267, 633
MvaI	CCWGG	3 cut(s)	128, 267, 633
MwoI	GCNNNNNNNGC	1 cut(s)	400
NdeII	GATC	2 cut(s)	316, 753
NlaIII	CATG	4 cut(s)	148, 463, 524, 773
NlaIV	GGNNCC	3 cut(s)	585, 630, 775
NmuCI	GTSAC	1 cut(s)	450
NspI	RCATGY	1 cut(s)	524
PciI	ACATGT	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	259, 686, 700
PkrI	GCNGC	7 cut(s)	32, 226, 251, 289, 292, 402, 693
PleI	GAGTC	2 cut(s)	601, 736
PmaCI	CACGTG	1 cut(s)	697
PmlI	CACGTG	1 cut(s)	697
PpsI	GAGTC	2 cut(s)	601, 736
Ppu21I	YACGTR	1 cut(s)	697
PscI	ACATGT	1 cut(s)	520
Psp6I	CCWGG	3 cut(s)	126, 265, 631
PspCI	CACGTG	1 cut(s)	697
PspGI	CCWGG	3 cut(s)	126, 265, 631
PspN4I	GGNNCC	3 cut(s)	585, 630, 775
PspPI	GGNCC	3 cut(s)	130, 456, 629
PstI	CTGCAG	1 cut(s)	295
RsaI	GTAC	2 cut(s)	411, 417
RsaNI	GTAC	2 cut(s)	410, 416
RseI	CAYNNNNRTG	1 cut(s)	564
SatI	GCNGC	7 cut(s)	31, 225, 250, 288, 291, 401, 692
Sau3AI	GATC	2 cut(s)	316, 753
Sau96I	GGNCC	3 cut(s)	130, 456, 629
SchI	GAGTC	2 cut(s)	602, 736
ScrFI	CCNGG	3 cut(s)	128, 267, 633
SduI	GDGCHC	1 cut(s)	193
SfaNI	GCATC	2 cut(s)	236, 568
SfcI	CTRYAG	2 cut(s)	34, 291
SgrAI	CRCCGGYG	1 cut(s)	586
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	718
SsiI	CCGC	5 cut(s)	151, 225, 386, 398, 590
SspMI	CTAG	3 cut(s)	221, 242, 404
StyD4I	CCNGG	3 cut(s)	126, 265, 631
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	2 cut(s)	752, 760
TasI	AATT	1 cut(s)	718
TatI	WGTACW	2 cut(s)	409, 415
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	3 cut(s)	259, 686, 700
TseFI	GTSAC	1 cut(s)	450
TseI	GCWGC	6 cut(s)	30, 249, 287, 290, 400, 691
Tsp45I	GTSAC	1 cut(s)	450
TspDTI	ATGAA	3 cut(s)	161, 354, 540
TspGWI	ACGGA	3 cut(s)	432, 438, 591
VpaK11BI	GGWCC	1 cut(s)	629
XagI	CCTNNNNNAGG	1 cut(s)	240
XceI	RCATGY	1 cut(s)	524
XmaJI	CCTAGG	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	3 cut(s)	221, 242, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.