Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Forward (+)

30252134 .. 30254595

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G311900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCGACCTGATGAGGGCAACCCTTTAGACCTCAACAACTTGCCTGATGATCATTTCAGTAGAGATGGTAAACAAGTTGTCGAGGACAGCTTCTCTGTTGCAGGCTACAGAAAAAAGAAAAGCGGCGCAAAAGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGGTTTTGTTCCCTCAAGTTCTGCAAATCTCAGGCCCTTGGGGGACACATGAATCGCCATCGTCAAGAAAGGGAGACAGAAACACTCAACAAGGCTCGTCAGCTAGTCTTCAGTAACGATAACCTAGCCGCCCCTCCTCCTCCTCACCTAGGATGCTGCCATCCAATTACACCGGCAGGATATCATCATCCGGCTGCTGCAGGCAACAACATTGGCGGTGACCCAACATTACCTCTCAGATTCCCAGCAAGAATGTTTTCTGGCTCTTCGTCAAGTACCCTCGTACCACCACCGCCTCCGCCGGCGGTGCCACAGCCAGGTGTTCAACCGCCTCAACAACCATATTTATACTCCTCTCCTTCGCGGCCCATGTTCCCTGCTTCCCATTACCCTCACCATCAACACTCGGTCAATGATTATTATGTTGGACATGTTCTTAGCAGCACTAGTAGTAGTAGCCCCTCACAGTATGGTCATGGTCACCCAAATGTGAACTATGGAGCATCACCACCGGAGCCCGCCAACTACACTTGCATTGGTGCACCTGTGGGACCCGGAGGAGGAGGAGGTGGAGGTGGTGGTAGAGACGGGTCACTGCACATGAACCAGGAGGAGGGATTGAATTGGAGCAGGAGCTATGCAGGGACACAGCAGCGTTTGGATCCTCCTCCTTCGATCAATCGATTTCAACCTGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

31.03

Weight (kDa)

8.15

Isoelectric Point (pI)

65.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	1 cut(s)	532
AciI	CCGC	9 cut(s)	123, 297, 384, 461, 467, 473, 497, 532, 687
AclWI	GGATC	2 cut(s)	824, 837
AcuI	CTGAAG	1 cut(s)	262
AfaI	GTAC	2 cut(s)	445, 453
AfiI	CCNNNNNNNGG	5 cut(s)	14, 317, 485, 728, 781
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	3 cut(s)	494, 790, 857
AhlI	ACTAGT	1 cut(s)	614
AjnI	CCWGG	3 cut(s)	484, 774, 859
AluBI	AGCT	3 cut(s)	90, 271, 804
AluI	AGCT	3 cut(s)	90, 271, 804
Alw21I	GWGCWC	1 cut(s)	712
Alw26I	GTCTC	2 cut(s)	236, 747
Alw44I	GTGCAC	1 cut(s)	708
AlwI	GGATC	2 cut(s)	824, 837
AoxI	GGCC	2 cut(s)	201, 533
ApaLI	GTGCAC	1 cut(s)	708
ApeKI	GCWGC	5 cut(s)	324, 362, 365, 609, 820
Asp700I	GAANNNNTTC	1 cut(s)	424
AspA2I	CCTAGG	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	202, 534, 719
AsuC2I	CCSGG	1 cut(s)	723
AsuHPI	GGTGA	5 cut(s)	305, 398, 554, 641, 666
AvaII	GGWCC	1 cut(s)	719
AvrII	CCTAGG	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	712
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BamHI	GGATCC	1 cut(s)	829
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	687
BbsI	GAAGAC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	712
BbvI	GCAGC	5 cut(s)	311, 349, 352, 621, 832
BccI	CCATC	5 cut(s)	59, 128, 234, 336, 573
BciT130I	CCWGG	3 cut(s)	486, 776, 861
BclI	TGATCA	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	723
BcoDI	GTCTC	2 cut(s)	236, 747
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	4 cut(s)	272, 293, 317, 615
BfmI	CTRYAG	2 cut(s)	106, 366
BisI	GCNGC	8 cut(s)	124, 297, 325, 363, 366, 533, 610, 821
BlnI	CCTAGG	1 cut(s)	316
BlsI	GCNGC	8 cut(s)	125, 298, 326, 364, 367, 534, 611, 822
Bme1390I	CCNGG	4 cut(s)	486, 723, 776, 861
Bme18I	GGWCC	1 cut(s)	719
BmgT120I	GGNCC	3 cut(s)	202, 534, 719
BmiI	GGNNCC	5 cut(s)	477, 684, 720, 721, 831
BmrFI	CCNGG	4 cut(s)	486, 723, 776, 861
BmsI	GCATC	2 cut(s)	311, 680
BpiI	GAAGAC	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	723
Bsa29I	ATCGAT	1 cut(s)	850
BsaJI	CCNNGG	2 cut(s)	205, 316
BsaWI	WCCGGW	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 317, 485, 728, 781
Bse118I	RCCGGY	2 cut(s)	340, 469
BseBI	CCWGG	3 cut(s)	486, 776, 861
BseCI	ATCGAT	1 cut(s)	850
BseDI	CCNNGG	2 cut(s)	205, 316
BseGI	GGATG	3 cut(s)	326, 328, 355
BseLI	CCNNNNNNNGG	5 cut(s)	14, 317, 485, 728, 781
BseMII	CTCAG	2 cut(s)	212, 418
BseRI	GAGGAG	9 cut(s)	294, 297, 300, 511, 741, 744, 747, 794, 825
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	5 cut(s)	311, 349, 352, 621, 832
BseYI	CCCAGC	1 cut(s)	412
BsgI	GTGCAG	1 cut(s)	749
Bsh1236I	CGCG	1 cut(s)	532
BshFI	GGCC	2 cut(s)	203, 535
BshNI	GGYRCC	1 cut(s)	475
BshVI	ATCGAT	1 cut(s)	850
BsiHKAI	GWGCWC	1 cut(s)	712
BsiSI	CCGG	5 cut(s)	341, 359, 470, 680, 723
BslFI	GGGAC	3 cut(s)	225, 732, 826
BslI	CCNNNNNNNGG	5 cut(s)	14, 317, 485, 728, 781
BsmAI	GTCTC	2 cut(s)	236, 747
BsmBI	CGTCTC	1 cut(s)	747
BsmFI	GGGAC	3 cut(s)	225, 732, 826
BsnI	GGCC	2 cut(s)	203, 535
Bsp1286I	GDGCHC	2 cut(s)	687, 712
Bsp143I	GATC	3 cut(s)	49, 829, 843
BspACI	CCGC	9 cut(s)	123, 297, 384, 461, 467, 473, 497, 532, 687
BspANI	GGCC	2 cut(s)	203, 535
BspCNI	CTCAG	2 cut(s)	211, 417
BspDI	ATCGAT	1 cut(s)	850
BspFNI	CGCG	1 cut(s)	532
BspLI	GGNNCC	5 cut(s)	477, 684, 720, 721, 831
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	2 cut(s)	824, 837
BspQI	GCTCTTC	1 cut(s)	439
BspT107I	GGYRCC	1 cut(s)	475
BsrFI	RCCGGY	2 cut(s)	340, 469
BssAI	RCCGGY	2 cut(s)	340, 469
BssECI	CCNNGG	2 cut(s)	205, 316
BssMI	GATC	3 cut(s)	49, 829, 843
BssT1I	CCWWGG	2 cut(s)	205, 316
Bst2UI	CCWGG	3 cut(s)	486, 776, 861
Bst4CI	ACNGT	1 cut(s)	636
Bst6I	CTCTTC	1 cut(s)	439
BstC8I	GCNNGC	4 cut(s)	103, 370, 471, 687
BstDEI	CTNAG	3 cut(s)	198, 404, 605
BstEII	GGTNACC	2 cut(s)	386, 647
BstENI	CCTNNNNNAGG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	326, 328, 355
BstFNI	CGCG	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	3 cut(s)	52, 832, 846
BstMAI	GTCTC	2 cut(s)	236, 747
BstMBI	GATC	3 cut(s)	49, 829, 843
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	3 cut(s)	486, 776, 861
BstNSI	RCATGY	1 cut(s)	602
BstPI	GGTNACC	2 cut(s)	386, 647
BstSCI	CCNGG	4 cut(s)	484, 721, 774, 859
BstSFI	CTRYAG	2 cut(s)	106, 366
BstSLI	GKGCMC	1 cut(s)	712
BstUI	CGCG	1 cut(s)	532
BstV1I	GCAGC	5 cut(s)	311, 349, 352, 621, 832
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
Bsu15I	ATCGAT	1 cut(s)	850
BsuRI	GGCC	2 cut(s)	203, 535
BsuTUI	ATCGAT	1 cut(s)	850
BtsCI	GGATG	3 cut(s)	326, 328, 355
BtsI	GCAGTG	1 cut(s)	761
BtsIMutI	CAGTG	1 cut(s)	761
Cac8I	GCNNGC	4 cut(s)	103, 370, 471, 687
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	2 cut(s)	340, 469
Cfr13I	GGNCC	3 cut(s)	202, 534, 719
ClaI	ATCGAT	1 cut(s)	850
Csp6I	GTAC	2 cut(s)	444, 452
CviAII	CATG	5 cut(s)	217, 538, 599, 644, 769
CviQI	GTAC	2 cut(s)	444, 452
DdeI	CTNAG	3 cut(s)	198, 404, 605
DpnI	GATC	3 cut(s)	51, 831, 845
DpnII	GATC	3 cut(s)	49, 829, 843
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
EciI	GGCGGA	1 cut(s)	456
Eco130I	CCWWGG	2 cut(s)	205, 316
Eco24I	GRGCYC	1 cut(s)	687
Eco32I	GATATC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	719
Eco57I	CTGAAG	1 cut(s)	262
Eco91I	GGTNACC	2 cut(s)	386, 647
EcoNI	CCTNNNNNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	2 cut(s)	202, 719
EcoO65I	GGTNACC	2 cut(s)	386, 647
EcoRII	CCWGG	3 cut(s)	484, 774, 859
EcoRV	GATATC	1 cut(s)	350
EcoT14I	CCWWGG	2 cut(s)	205, 316
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	2 cut(s)	205, 316
Esp3I	CGTCTC	1 cut(s)	747
FaeI	CATG	5 cut(s)	220, 541, 602, 647, 772
FaqI	GGGAC	3 cut(s)	225, 732, 826
FatI	CATG	5 cut(s)	216, 537, 598, 643, 768
FauI	CCCGC	1 cut(s)	694
FbaI	TGATCA	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	8 cut(s)	124, 297, 325, 363, 366, 533, 610, 821
FokI	GGATG	3 cut(s)	315, 333, 342
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	8 cut(s)	124, 297, 325, 363, 366, 533, 610, 821
FspBI	CTAG	4 cut(s)	272, 293, 317, 615
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	8 cut(s)	124, 297, 325, 363, 366, 533, 610, 821
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	203, 535
HapII	CCGG	5 cut(s)	341, 359, 470, 680, 723
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	5 cut(s)	220, 541, 602, 647, 772
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	220, 408
HpaII	CCGG	5 cut(s)	341, 359, 470, 680, 723
HphI	GGTGA	5 cut(s)	305, 398, 554, 641, 666
Hpy166II	GTNNAC	4 cut(s)	71, 160, 661, 710
Hpy188I	TCNGA	1 cut(s)	407
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	4 cut(s)	71, 160, 661, 710
HpyAV	CCTTC	3 cut(s)	148, 537, 849
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4V	TGCA	7 cut(s)	101, 192, 368, 702, 710, 766, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	3 cut(s)	198, 404, 605
Hsp92II	CATG	5 cut(s)	220, 541, 602, 647, 772
HspAI	GCGC	1 cut(s)	126
KflI	GGGWCCC	1 cut(s)	719
KroI	GCCGGC	1 cut(s)	469
KroNI	GCCGGC	1 cut(s)	471
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	49, 829, 843
LguI	GCTCTTC	1 cut(s)	439
LmnI	GCTCC	4 cut(s)	668, 682, 795, 801
Lsp1109I	GCAGC	5 cut(s)	311, 349, 352, 621, 832
LweI	GCATC	2 cut(s)	311, 680
MaeI	CTAG	4 cut(s)	272, 293, 317, 615
MaeIII	GTNAC	4 cut(s)	281, 386, 647, 759
MalI	GATC	3 cut(s)	51, 831, 845
MboI	GATC	3 cut(s)	49, 829, 843
MboII	GAAGA	2 cut(s)	268, 426
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	2 cut(s)	687, 712
MluCI	AATT	2 cut(s)	333, 790
MmeI	TCCRAC	1 cut(s)	574
MreI	CGCCGGCG	1 cut(s)	469
MroNI	GCCGGC	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	654
MspI	CCGG	5 cut(s)	341, 359, 470, 680, 723
MspR9I	CCNGG	4 cut(s)	486, 723, 776, 861
MvaI	CCWGG	3 cut(s)	486, 776, 861
MvnI	CGCG	1 cut(s)	532
MwoI	GCNNNNNNNGC	1 cut(s)	475
NaeI	GCCGGC	1 cut(s)	471
NciI	CCSGG	1 cut(s)	723
NdeII	GATC	3 cut(s)	49, 829, 843
NgoMIV	GCCGGC	1 cut(s)	469
NlaIII	CATG	5 cut(s)	220, 541, 602, 647, 772
NlaIV	GGNNCC	5 cut(s)	477, 684, 720, 721, 831
NmuCI	GTSAC	3 cut(s)	386, 647, 759
NspI	RCATGY	1 cut(s)	602
PciI	ACATGT	1 cut(s)	598
PciSI	GCTCTTC	1 cut(s)	439
PdiI	GCCGGC	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	220, 408
PkrI	GCNGC	8 cut(s)	125, 298, 326, 364, 367, 534, 611, 822
PpuMI	RGGWCCY	1 cut(s)	719
PscI	ACATGT	1 cut(s)	598
Psp5II	RGGWCCY	1 cut(s)	719
Psp6I	CCWGG	3 cut(s)	484, 774, 859
PspEI	GGTNACC	2 cut(s)	386, 647
PspFI	CCCAGC	1 cut(s)	412
PspGI	CCWGG	3 cut(s)	484, 774, 859
PspN4I	GGNNCC	5 cut(s)	477, 684, 720, 721, 831
PspPI	GGNCC	3 cut(s)	202, 534, 719
PspPPI	RGGWCCY	1 cut(s)	719
PsrI	GAACNNNNNNTAC	2 cut(s)	160, 192
PstI	CTGCAG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	829
RsaI	GTAC	2 cut(s)	445, 453
RsaNI	GTAC	2 cut(s)	444, 452
RseI	CAYNNNNRTG	1 cut(s)	654
SapI	GCTCTTC	1 cut(s)	439
SatI	GCNGC	8 cut(s)	124, 297, 325, 363, 366, 533, 610, 821
Sau3AI	GATC	3 cut(s)	49, 829, 843
Sau96I	GGNCC	3 cut(s)	202, 534, 719
ScrFI	CCNGG	4 cut(s)	486, 723, 776, 861
SduI	GDGCHC	2 cut(s)	687, 712
SfaNI	GCATC	2 cut(s)	311, 680
SfcI	CTRYAG	2 cut(s)	106, 366
SgrAI	CRCCGGYG	1 cut(s)	469
SinI	GGWCC	1 cut(s)	719
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SpeI	ACTAGT	1 cut(s)	614
Sse9I	AATT	2 cut(s)	333, 790
SsiI	CCGC	9 cut(s)	123, 297, 384, 461, 467, 473, 497, 532, 687
SspMI	CTAG	4 cut(s)	272, 293, 317, 615
StyD4I	CCNGG	4 cut(s)	484, 721, 774, 859
StyI	CCWWGG	2 cut(s)	205, 316
TaaI	ACNGT	1 cut(s)	636
TaqI	TCGA	3 cut(s)	81, 842, 850
TaqII	GACCGA	1 cut(s)	565
TasI	AATT	2 cut(s)	333, 790
TauI	GCSGC	3 cut(s)	126, 299, 535
TfiI	GAWTC	2 cut(s)	220, 408
TscAI	CASTG	1 cut(s)	768
TseFI	GTSAC	3 cut(s)	386, 647, 759
TseI	GCWGC	5 cut(s)	324, 362, 365, 609, 820
Tsp45I	GTSAC	3 cut(s)	386, 647, 759
TspDTI	ATGAA	2 cut(s)	233, 785
TspRI	CASTG	1 cut(s)	768
VneI	GTGCAC	1 cut(s)	708
VpaK11BI	GGWCC	1 cut(s)	719
XagI	CCTNNNNNAGG	1 cut(s)	315
XceI	RCATGY	1 cut(s)	602
XmaJI	CCTAGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	4 cut(s)	272, 293, 317, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.