Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Forward (+)

45640770 .. 45642561

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0282300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGGGGCCTTGTGGTGAGTATTTTGTTGACTCCCTTTGTACAATTTTTGGGGAGATCATGGAATTTGGTAGACATAATTACGGCGGCCACTTTTCTGGCCCCCCACATCCTCTGTTTGTTTGCTCCGTTTCATTTCACATGGGCTGCCTTTTGGTTGGCCGCCGCACTCTATATTCTCACTGGTTTGGGAGTCACTCTGGGTTTCCATAGACACCTTGCGCACAAGAGTTTACGGCTTCCCAAATGGCTCGAGTACTTGTTTGCCTATTTCGGGGCTCTATCACTTCAGGGAAGTCCGATAGAATGGGTGAGCACGCACCGATACCATCACCAGTTTACAGACACAGAGAGAGACCCTCACAGCCCCTTGAAGGGTTTCTGGTTTAGTCATGTGGGTTGGATCTTTGATAGCACTTCTCGATATCGAAAAAATGGAGGATTGAAGAACGTTGAGGATATGAAGAAGCAGTGGTTCTATAGATTTCTTCATCGTACATACGTTTTACACATAATTGTTTCTGGAGCTTTGCTCTATGCCCTAGGTGGACTACCTTTCTTTATTTGGGGAATGGGAGTGAGAACGGTATATGTTTTCCACTTCACCTTGCTAGTAAACTCGGCCGGTCACATCTGGGGAAAACAAGTATGGAACACCGGCGACCTGTCAAAGAACAATTGGTGGTTGGGATGGATCGCACTTGGAGAAGGGTGGCACAACAACCATCATGCATTTGAATACTCAGCTCGACAGGGTCTGGAATGGTGGCAAGTCGACTTCACTTGGTATGTAATCACAGCTCTTCAAGCAATTGGGTTGGCAACTGACGTCAAAGTTCCCACTGAATCTCAGATGCGTCGCAAAGCCCTCAAGAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

34.0

Weight (kDa)

9.68

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	47 - 263	9.9e-20	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	831
Acc16I	TGCGCA	1 cut(s)	222
AccI	GTMKAC	2 cut(s)	72, 774
AciI	CCGC	3 cut(s)	86, 162, 165
AclI	AACGTT	1 cut(s)	450
AclWI	GGATC	2 cut(s)	410, 701
AcoI	YGGCCR	3 cut(s)	87, 159, 621
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	828
AfaI	GTAC	3 cut(s)	42, 257, 496
AfiI	CCNNNNNNNGG	3 cut(s)	273, 373, 374
AgsI	TTSAA	4 cut(s)	373, 445, 737, 806
AluBI	AGCT	3 cut(s)	527, 746, 800
AluI	AGCT	3 cut(s)	527, 746, 800
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	410, 701
AlwNI	CAGNNNCTG	1 cut(s)	757
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	5 cut(s)	7, 87, 99, 159, 621
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	64
Asp700I	GAANNNNTTC	1 cut(s)	377
AspA2I	CCTAGG	1 cut(s)	541
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	7, 100
AsuHPI	GGTGA	4 cut(s)	28, 322, 323, 595
AvaI	CYCGRG	1 cut(s)	251
AvrII	CCTAGG	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	3 cut(s)	336, 684, 732
BceAI	ACGGC	2 cut(s)	99, 251
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	542, 611
BfmI	CTRYAG	1 cut(s)	478
BisI	GCNGC	4 cut(s)	87, 147, 162, 165
BlnI	CCTAGG	1 cut(s)	541
BlsI	GCNGC	4 cut(s)	88, 148, 163, 166
BmcAI	AGTACT	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	7, 100
BmiI	GGNNCC	2 cut(s)	8, 102
BmsI	GCATC	1 cut(s)	843
BplI	GAGNNNNNCTC	4 cut(s)	343, 375, 516, 548
BpmI	CTGGAG	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	854
BsaHI	GRCGYC	1 cut(s)	828
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 373, 374
Bse118I	RCCGGY	2 cut(s)	623, 656
Bse1I	ACTGG	2 cut(s)	187, 334
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	2 cut(s)	108, 695
BseLI	CCNNNNNNNGG	3 cut(s)	273, 373, 374
BseMII	CTCAG	2 cut(s)	756, 863
BseNI	ACTGG	2 cut(s)	187, 334
BseX3I	CGGCCG	1 cut(s)	621
BseXI	GCAGC	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	624
BshFI	GGCC	5 cut(s)	9, 89, 101, 161, 623
BsiEI	CGRYCG	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	624, 657
BslI	CCNNNNNNNGG	3 cut(s)	273, 373, 374
BsmAI	GTCTC	1 cut(s)	348
BsnI	GGCC	5 cut(s)	9, 89, 101, 161, 623
Bso31I	GGTCTC	1 cut(s)	348
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	280, 317
Bsp1407I	TGTACA	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	56, 402, 693
BspACI	CCGC	3 cut(s)	86, 162, 165
BspANI	GGCC	5 cut(s)	9, 89, 101, 161, 623
BspCNI	CTCAG	2 cut(s)	755, 862
BspLI	GGNNCC	2 cut(s)	8, 102
BspPI	GGATC	2 cut(s)	410, 701
BspQI	GCTCTTC	1 cut(s)	807
BspTNI	GGTCTC	1 cut(s)	348
BsrFI	RCCGGY	2 cut(s)	623, 656
BsrGI	TGTACA	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	187, 334
BssAI	RCCGGY	2 cut(s)	623, 656
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	3 cut(s)	56, 402, 693
BssNI	GRCGYC	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	541
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	807
BstACI	GRCGYC	1 cut(s)	828
BstAUI	TGTACA	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	742, 849
BstF5I	GGATG	2 cut(s)	108, 695
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	3 cut(s)	59, 405, 696
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	3 cut(s)	56, 402, 693
BstMCI	CGRYCG	1 cut(s)	624
BstMWI	GCNNNNNNNGC	1 cut(s)	806
BstSFI	CTRYAG	1 cut(s)	478
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	402
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	402
BstZI	CGGCCG	1 cut(s)	621
BsuRI	GGCC	5 cut(s)	9, 89, 101, 161, 623
BtsCI	GGATG	2 cut(s)	108, 695
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	3 cut(s)	180, 476, 840
Cac8I	GCNNGC	1 cut(s)	317
CaiI	CAGNNNCTG	1 cut(s)	757
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	2 cut(s)	623, 656
Cfr13I	GGNCC	2 cut(s)	7, 100
CseI	GACGC	1 cut(s)	845
Csp6I	GTAC	3 cut(s)	41, 256, 495
CviAII	CATG	4 cut(s)	60, 141, 392, 728
CviQI	GTAC	3 cut(s)	41, 256, 495
DdeI	CTNAG	2 cut(s)	742, 849
DpnI	GATC	3 cut(s)	58, 404, 695
DpnII	GATC	3 cut(s)	56, 402, 693
EaeI	YGGCCR	3 cut(s)	87, 159, 621
EagI	CGGCCG	1 cut(s)	621
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
EclXI	CGGCCG	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	348
Eco32I	GATATC	1 cut(s)	425
Eco52I	CGGCCG	1 cut(s)	621
Eco57I	CTGAAG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	541
EcoT22I	ATGCAT	1 cut(s)	733
EcoT38I	GRGCYC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	541
FaeI	CATG	4 cut(s)	63, 144, 395, 731
FatI	CATG	4 cut(s)	59, 140, 391, 727
FblI	GTMKAC	2 cut(s)	72, 774
Fnu4HI	GCNGC	4 cut(s)	87, 147, 162, 165
FokI	GGATG	2 cut(s)	95, 702
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	4 cut(s)	87, 147, 162, 165
FspBI	CTAG	2 cut(s)	542, 611
FspI	TGCGCA	1 cut(s)	222
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	4 cut(s)	87, 147, 162, 165
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	5 cut(s)	9, 89, 101, 161, 623
HapII	CCGG	2 cut(s)	624, 657
HgaI	GACGC	1 cut(s)	845
HhaI	GCGC	1 cut(s)	223
Hin1I	GRCGYC	1 cut(s)	828
Hin1II	CATG	4 cut(s)	63, 144, 395, 731
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	2 cut(s)	30, 775
HindII	GTYRAC	2 cut(s)	30, 775
HinfI	GANTC	3 cut(s)	31, 192, 845
HpaII	CCGG	2 cut(s)	624, 657
HphI	GGTGA	4 cut(s)	28, 322, 323, 595
Hpy166II	GTNNAC	7 cut(s)	30, 73, 233, 339, 548, 616, 775
Hpy188I	TCNGA	2 cut(s)	300, 852
Hpy188III	TCNNGA	4 cut(s)	420, 522, 758, 871
Hpy8I	GTNNAC	7 cut(s)	30, 73, 233, 339, 548, 616, 775
Hpy99I	CGWCG	1 cut(s)	861
HpyAV	CCTTC	2 cut(s)	367, 701
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	3 cut(s)	450, 501, 828
HpyCH4V	TGCA	1 cut(s)	731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	806
HpyF3I	CTNAG	2 cut(s)	742, 849
HpySE526I	ACGT	3 cut(s)	450, 501, 828
Hsp92I	GRCGYC	1 cut(s)	828
Hsp92II	CATG	4 cut(s)	63, 144, 395, 731
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	3 cut(s)	56, 402, 693
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	2 cut(s)	130, 524
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	843
MaeI	CTAG	2 cut(s)	542, 611
MaeII	ACGT	3 cut(s)	450, 501, 828
MaeIII	GTNAC	2 cut(s)	193, 626
MalI	GATC	3 cut(s)	58, 404, 695
MboI	GATC	3 cut(s)	56, 402, 693
MboII	GAAGA	4 cut(s)	457, 475, 479, 794
MfeI	CAATTG	2 cut(s)	676, 810
MflI	RGATCY	1 cut(s)	402
MhlI	GDGCHC	2 cut(s)	280, 317
MluCI	AATT	6 cut(s)	44, 64, 78, 513, 676, 810
MlyI	GAGTC	2 cut(s)	25, 201
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	5 cut(s)	122, 369, 431, 448, 878
Mph1103I	ATGCAT	1 cut(s)	733
MroXI	GAANNNNTTC	1 cut(s)	377
MspI	CCGG	2 cut(s)	624, 657
MunI	CAATTG	2 cut(s)	676, 810
MwoI	GCNNNNNNNGC	1 cut(s)	806
NdeII	GATC	3 cut(s)	56, 402, 693
NlaIII	CATG	4 cut(s)	63, 144, 395, 731
NlaIV	GGNNCC	2 cut(s)	8, 102
NmeAIII	GCCGAG	1 cut(s)	599
NmuCI	GTSAC	2 cut(s)	193, 626
NsbI	TGCGCA	1 cut(s)	222
NsiI	ATGCAT	1 cut(s)	733
PaeR7I	CTCGAG	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	807
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	845
PflFI	GACNNNGTC	1 cut(s)	753
PkrI	GCNGC	4 cut(s)	88, 148, 163, 166
PleI	GAGTC	2 cut(s)	25, 200
PpsI	GAGTC	2 cut(s)	25, 200
Psp1406I	AACGTT	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	8, 102
PspPI	GGNCC	2 cut(s)	7, 100
PspXI	VCTCGAGB	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	402
PsyI	GACNNNGTC	1 cut(s)	753
RsaI	GTAC	3 cut(s)	42, 257, 496
RsaNI	GTAC	3 cut(s)	41, 256, 495
SalI	GTCGAC	1 cut(s)	773
SapI	GCTCTTC	1 cut(s)	807
SatI	GCNGC	4 cut(s)	87, 147, 162, 165
Sau3AI	GATC	3 cut(s)	56, 402, 693
Sau96I	GGNCC	2 cut(s)	7, 100
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	2 cut(s)	25, 201
SduI	GDGCHC	2 cut(s)	280, 317
SfaNI	GCATC	1 cut(s)	843
SfcI	CTRYAG	1 cut(s)	478
Sfr274I	CTCGAG	1 cut(s)	251
SgrAI	CRCCGGYG	1 cut(s)	656
SlaI	CTCGAG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	251, 869
SmoI	CTYRAG	2 cut(s)	251, 869
Sse9I	AATT	6 cut(s)	44, 64, 78, 513, 676, 810
SsiI	CCGC	3 cut(s)	86, 162, 165
SspI	AATATT	1 cut(s)	878
SspMI	CTAG	2 cut(s)	542, 611
StyI	CCWWGG	1 cut(s)	541
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	3 cut(s)	453, 504, 831
TaqI	TCGA	5 cut(s)	252, 421, 427, 748, 774
TasI	AATT	6 cut(s)	44, 64, 78, 513, 676, 810
TatI	WGTACW	2 cut(s)	40, 255
TauI	GCSGC	3 cut(s)	89, 164, 167
TfiI	GAWTC	1 cut(s)	845
TscAI	CASTG	3 cut(s)	187, 476, 847
TseFI	GTSAC	2 cut(s)	193, 626
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	2 cut(s)	193, 626
TspDTI	ATGAA	3 cut(s)	122, 476, 479
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	3 cut(s)	187, 476, 847
Tth111I	GACNNNGTC	1 cut(s)	753
XapI	RAATTY	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	251
XmaJI	CCTAGG	1 cut(s)	541
XmiI	GTMKAC	2 cut(s)	72, 774
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	2 cut(s)	542, 611
ZraI	GACGTC	1 cut(s)	829
ZrmI	AGTACT	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.