Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Forward (+)

9104727 .. 9107145

Gene Structure 2419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006621

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAATTTTGAAAATGGGGATATTATGAGCAAACAAGGAATTGAAAATCTTATGAATCCATTAGACCTCAACAACTTGCCCGATGATCATAATCGAGACAGAGATAGAGATAGAGACCGAGAAAATGGTAAACAATTCATCGACGGCGACGCCTCCTCCTCCTCAGGCCATAGAAAAAAGAAAAGCGGCGGAAAAGATGGAAAAGACGAGAGTGGGAAGGTCTACGAGTGTAGGTTTTGTTCCCTCAAGTTCTGCAAATCTCAAGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAGACAGAGACACTAAACCGTGCTCGTCAGCTGGTCTTCAACAACGATAACCTAGCCGCTCCTGGCCCTCCACATTTAGGCTGCTGCCATCCGATGACATCTCCAGGAGGGTATCCCCACCCAATTGCAGGAGCTCCCGGTGACCCAACAACATTACCTCTGAGATTCCCTGCAAGAATGTTTTCTGGTTCTCCTTCTACACAACTCATACCACCGCCGCCAGCAGCGGCCCCAGGTCAACCACCGCAAGCCGTACAGCCCTCGCAGCCCTACTTATACCCCTCTCCTTCACGCCCCATGTCCTACCCTTCTTCACACTATCAACACCAAAATGACTACTATGTCGGTCATGTCCTCGGTGGTAACAACACTAGTGCATCCCAGTATGGCCATCATCTGAATGTGAGCTATGGCGCCACGGCGGGTGTACAAGATCATCATCAGTCCAACAACGGTTACAACAACTATACTTGTATTGGTGCTCCGGTCACGCATAGCGGGGGGTTTGGGCAAGGCAGCAGCAGCCTGAGTTCGGAGTTAACTGGATCGGGAGGAGGAGGCGGTGTTGGTGGTGGAGCTAGGGATGGGTCTATGAGCTACTCAGGAACACAACCCCCTCCACCTCCTTCCATCAACCGATTTCAACATGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

34.11

Weight (kDa)

7.74

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	716
AccBSI	CCGCTC	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	856
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	1 cut(s)	4
AcyI	GRCGYC	2 cut(s)	150, 717
AfaI	GTAC	2 cut(s)	558, 732
AfiI	CCNNNNNNNGG	4 cut(s)	301, 380, 431, 835
AgsI	TTSAA	4 cut(s)	11, 44, 343, 947
AhlI	ACTAGT	1 cut(s)	674
AjnI	CCWGG	3 cut(s)	364, 406, 535
AluBI	AGCT	6 cut(s)	266, 334, 437, 711, 881, 900
AluI	AGCT	6 cut(s)	266, 334, 437, 711, 881, 900
Alw21I	GWGCWC	3 cut(s)	328, 439, 787
Alw26I	GTCTC	4 cut(s)	90, 108, 299, 305
AlwI	GGATC	1 cut(s)	856
AoxI	GGCC	4 cut(s)	166, 367, 531, 691
ApeKI	GCWGC	7 cut(s)	384, 387, 527, 568, 819, 822, 825
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	2 cut(s)	368, 532
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	455
AxyI	CCTNAGG	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	693
BanI	GGYRCC	1 cut(s)	716
BanII	GRGCYC	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	3 cut(s)	328, 439, 787
BbvI	GCAGC	7 cut(s)	371, 374, 539, 580, 831, 834, 837
BccI	CCATC	5 cut(s)	191, 399, 702, 881, 941
BceAI	ACGGC	3 cut(s)	160, 539, 738
BciT130I	CCWGG	3 cut(s)	366, 408, 537
BciVI	GTATCC	1 cut(s)	426
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	4 cut(s)	90, 108, 299, 305
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	3 cut(s)	356, 675, 882
BfoI	RGCGCY	1 cut(s)	720
BfuI	GTATCC	1 cut(s)	426
Bme1390I	CCNGG	4 cut(s)	366, 408, 441, 537
BmgT120I	GGNCC	2 cut(s)	368, 532
BmiI	GGNNCC	2 cut(s)	534, 718
BmrFI	CCNGG	4 cut(s)	366, 408, 441, 537
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	1 cut(s)	689
BmuI	ACTGGG	1 cut(s)	679
BpiI	GAAGAC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	230, 246
BpuMI	CCSGG	1 cut(s)	441
BsaBI	GATNNNNATC	2 cut(s)	90, 741
BsaHI	GRCGYC	2 cut(s)	150, 717
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	535, 658, 720
BsaWI	WCCGGW	1 cut(s)	787
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 852, 882
Bsc4I	CCNNNNNNNGG	4 cut(s)	301, 380, 431, 835
Bse1I	ACTGG	2 cut(s)	685, 850
Bse21I	CCTNAGG	1 cut(s)	163
Bse8I	GATNNNNATC	2 cut(s)	90, 741
BseBI	CCWGG	3 cut(s)	366, 408, 537
BseDI	CCNNGG	3 cut(s)	535, 658, 720
BseGI	GGATG	3 cut(s)	391, 680, 892
BseJI	GATNNNNATC	2 cut(s)	90, 741
BseLI	CCNNNNNNNGG	4 cut(s)	301, 380, 431, 835
BseMII	CTCAG	4 cut(s)	177, 455, 821, 918
BseNI	ACTGG	2 cut(s)	685, 850
BseRI	GAGGAG	5 cut(s)	145, 148, 151, 870, 873
BseXI	GCAGC	7 cut(s)	371, 374, 539, 580, 831, 834, 837
BshFI	GGCC	4 cut(s)	168, 369, 533, 693
BshNI	GGYRCC	1 cut(s)	716
BsiHKAI	GWGCWC	3 cut(s)	328, 439, 787
BsiSI	CCGG	2 cut(s)	441, 788
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	4 cut(s)	301, 380, 431, 835
BsmAI	GTCTC	4 cut(s)	90, 108, 299, 305
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	4 cut(s)	168, 369, 533, 693
Bso31I	GGTCTC	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	328, 439, 787
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	3 cut(s)	85, 736, 848
BspANI	GGCC	4 cut(s)	168, 369, 533, 693
BspCNI	CTCAG	4 cut(s)	176, 456, 822, 917
BspLI	GGNNCC	2 cut(s)	534, 718
BspPI	GGATC	1 cut(s)	856
BspT107I	GGYRCC	1 cut(s)	716
BspTNI	GGTCTC	1 cut(s)	108
BsrBI	CCGCTC	1 cut(s)	362
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	685, 850
BssECI	CCNNGG	3 cut(s)	535, 658, 720
BssMI	GATC	3 cut(s)	85, 736, 848
BssNI	GRCGYC	2 cut(s)	150, 717
Bst2UI	CCWGG	3 cut(s)	366, 408, 537
Bst4CI	ACNGT	2 cut(s)	323, 758
BstACI	GRCGYC	2 cut(s)	150, 717
BstAUI	TGTACA	1 cut(s)	730
BstC8I	GCNNGC	2 cut(s)	525, 552
BstDEI	CTNAG	4 cut(s)	163, 464, 830, 904
BstDSI	CCRYGG	1 cut(s)	720
BstEII	GGTNACC	1 cut(s)	443
BstF5I	GGATG	3 cut(s)	391, 680, 892
BstH2I	RGCGCY	1 cut(s)	720
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	3 cut(s)	88, 739, 851
BstMAI	GTCTC	4 cut(s)	90, 108, 299, 305
BstMBI	GATC	3 cut(s)	85, 736, 848
BstMWI	GCNNNNNNNGC	2 cut(s)	568, 825
BstNI	CCWGG	3 cut(s)	366, 408, 537
BstPI	GGTNACC	1 cut(s)	443
BstSCI	CCNGG	4 cut(s)	364, 406, 439, 535
BstV1I	GCAGC	7 cut(s)	371, 374, 539, 580, 831, 834, 837
BstV2I	GAAGAC	1 cut(s)	331
Bsu36I	CCTNAGG	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	426
BsuRI	GGCC	4 cut(s)	168, 369, 533, 693
BtgI	CCRYGG	1 cut(s)	720
BtsCI	GGATG	3 cut(s)	391, 680, 892
Cac8I	GCNNGC	2 cut(s)	525, 552
CfoI	GCGC	1 cut(s)	719
Cfr13I	GGNCC	2 cut(s)	368, 532
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	557, 731
CviAII	CATG	4 cut(s)	280, 601, 653, 950
CviQI	GTAC	2 cut(s)	557, 731
DdeI	CTNAG	4 cut(s)	163, 464, 830, 904
DinI	GGCGCC	1 cut(s)	718
DpnI	GATC	3 cut(s)	87, 738, 850
DpnII	GATC	3 cut(s)	85, 736, 848
DrdI	GACNNNNNNGTC	1 cut(s)	644
DseDI	GACNNNNNNGTC	1 cut(s)	644
EaeI	YGGCCR	1 cut(s)	691
EciI	GGCGGA	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	439
Eco31I	GGTCTC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	437
Eco81I	CCTNAGG	1 cut(s)	163
Eco91I	GGTNACC	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	443
EcoRII	CCWGG	3 cut(s)	364, 406, 535
EcoT38I	GRGCYC	1 cut(s)	439
EgeI	GGCGCC	1 cut(s)	718
EheI	GGCGCC	1 cut(s)	718
FaeI	CATG	4 cut(s)	283, 604, 656, 953
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	4 cut(s)	279, 600, 652, 949
FauI	CCCGC	2 cut(s)	718, 794
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	222
FokI	GGATG	3 cut(s)	378, 667, 899
FriOI	GRGCYC	1 cut(s)	439
FspBI	CTAG	3 cut(s)	356, 675, 882
GlaI	GCGC	1 cut(s)	718
GsuI	CTGGAG	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	720
HaeIII	GGCC	4 cut(s)	168, 369, 533, 693
HapII	CCGG	2 cut(s)	441, 788
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	719
Hin1I	GRCGYC	2 cut(s)	150, 717
Hin1II	CATG	4 cut(s)	283, 604, 656, 953
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HincII	GTYRAC	2 cut(s)	542, 843
HindII	GTYRAC	2 cut(s)	542, 843
HinfI	GANTC	2 cut(s)	55, 468
HpaI	GTTAAC	1 cut(s)	843
HpaII	CCGG	2 cut(s)	441, 788
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	5 cut(s)	131, 223, 542, 731, 843
Hpy188I	TCNGA	4 cut(s)	396, 465, 702, 838
Hpy188III	TCNNGA	3 cut(s)	95, 852, 906
Hpy8I	GTNNAC	5 cut(s)	131, 223, 542, 731, 843
Hpy99I	CGWCG	2 cut(s)	146, 152
HpyAV	CCTTC	5 cut(s)	211, 507, 600, 621, 939
HpyCH4III	ACNGT	2 cut(s)	323, 758
HpyCH4V	TGCA	4 cut(s)	255, 431, 476, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	568, 825
HpyF3I	CTNAG	4 cut(s)	163, 464, 830, 904
Hsp92I	GRCGYC	2 cut(s)	150, 717
Hsp92II	CATG	4 cut(s)	283, 604, 656, 953
HspAI	GCGC	1 cut(s)	717
KasI	GGCGCC	1 cut(s)	716
Ksp22I	TGATCA	1 cut(s)	85
KspAI	GTTAAC	1 cut(s)	843
Kzo9I	GATC	3 cut(s)	85, 736, 848
LmnI	GCTCC	5 cut(s)	367, 434, 442, 790, 878
Lsp1109I	GCAGC	7 cut(s)	371, 374, 539, 580, 831, 834, 837
LweI	GCATC	1 cut(s)	689
MaeI	CTAG	3 cut(s)	356, 675, 882
MaeIII	GTNAC	4 cut(s)	443, 665, 758, 790
MalI	GATC	3 cut(s)	87, 738, 850
MbiI	CCGCTC	1 cut(s)	362
MboI	GATC	3 cut(s)	85, 736, 848
MboII	GAAGA	2 cut(s)	331, 606
MfeI	CAATTG	1 cut(s)	426
MhlI	GDGCHC	3 cut(s)	328, 439, 787
MlsI	TGGCCA	1 cut(s)	693
MluCI	AATT	4 cut(s)	4, 39, 134, 426
MluNI	TGGCCA	1 cut(s)	693
Mly113I	GGCGCC	1 cut(s)	717
MmeI	TCCRAC	1 cut(s)	774
Mox20I	TGGCCA	1 cut(s)	693
MroXI	GAANNNNTTC	1 cut(s)	484
MscI	TGGCCA	1 cut(s)	693
MseI	TTAA	1 cut(s)	842
MslI	CAYNNNNRTG	2 cut(s)	633, 702
Msp20I	TGGCCA	1 cut(s)	693
MspA1I	CMGCKG	2 cut(s)	334, 530
MspI	CCGG	2 cut(s)	441, 788
MspR9I	CCNGG	4 cut(s)	366, 408, 441, 537
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	3 cut(s)	366, 408, 537
MwoI	GCNNNNNNNGC	2 cut(s)	568, 825
NarI	GGCGCC	1 cut(s)	717
NciI	CCSGG	1 cut(s)	441
NdeII	GATC	3 cut(s)	85, 736, 848
NlaIII	CATG	4 cut(s)	283, 604, 656, 953
NlaIV	GGNNCC	2 cut(s)	534, 718
NmuCI	GTSAC	2 cut(s)	443, 790
PdmI	GAANNNNTTC	1 cut(s)	484
PfeI	GAWTC	2 cut(s)	55, 468
PfoI	TCCNGGA	1 cut(s)	406
PluTI	GGCGCC	1 cut(s)	720
Psp124BI	GAGCTC	1 cut(s)	439
Psp6I	CCWGG	3 cut(s)	364, 406, 535
PspEI	GGTNACC	1 cut(s)	443
PspGI	CCWGG	3 cut(s)	364, 406, 535
PspN4I	GGNNCC	2 cut(s)	534, 718
PspPI	GGNCC	2 cut(s)	368, 532
PsrI	GAACNNNNNNTAC	2 cut(s)	223, 255
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	558, 732
RsaNI	GTAC	2 cut(s)	557, 731
RseI	CAYNNNNRTG	2 cut(s)	633, 702
SacI	GAGCTC	1 cut(s)	439
SaqAI	TTAA	1 cut(s)	842
Sau3AI	GATC	3 cut(s)	85, 736, 848
Sau96I	GGNCC	2 cut(s)	368, 532
ScrFI	CCNGG	4 cut(s)	366, 408, 441, 537
SduI	GDGCHC	3 cut(s)	328, 439, 787
SfaNI	GCATC	1 cut(s)	689
SfoI	GGCGCC	1 cut(s)	718
SmiMI	CAYNNNNRTG	2 cut(s)	633, 702
SmlI	CTYRAG	2 cut(s)	245, 261
SmoI	CTYRAG	2 cut(s)	245, 261
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	4 cut(s)	4, 39, 134, 426
SspDI	GGCGCC	1 cut(s)	716
SspMI	CTAG	3 cut(s)	356, 675, 882
SstI	GAGCTC	1 cut(s)	439
StyD4I	CCNGG	4 cut(s)	364, 406, 439, 535
TaaI	ACNGT	2 cut(s)	323, 758
TaqI	TCGA	2 cut(s)	94, 141
TaqII	GACCGA	2 cut(s)	132, 638
TasI	AATT	4 cut(s)	4, 39, 134, 426
TatI	WGTACW	1 cut(s)	730
TauI	GCSGC	4 cut(s)	189, 362, 523, 533
TfiI	GAWTC	2 cut(s)	55, 468
Tru1I	TTAA	1 cut(s)	842
Tru9I	TTAA	1 cut(s)	842
TseFI	GTSAC	2 cut(s)	443, 790
TseI	GCWGC	7 cut(s)	384, 387, 527, 568, 819, 822, 825
Tsp45I	GTSAC	2 cut(s)	443, 790
TspDTI	ATGAA	4 cut(s)	17, 68, 127, 296
XapI	RAATTY	1 cut(s)	4
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	484
XspI	CTAG	3 cut(s)	356, 675, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.