Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Reverse (-)

56997695 .. 57000329

Gene Structure 2635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00376280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAGTCCAAAATCCAAAGGGAATCCATTAGACCTTAACAACTTGCCTGATGATCATAATCGAGACAGAGATAGAGATAGAGACCGAGAAAATGGTAAACAATTCATCGACGGCGACGCCTCCTCCTCCTCAGGTACCGAGAGGGAGACAGAGACACTAAACCGTGCTCGTCAGCTGGTCTTCAACAACGATAACCTAGCCGCTCCTGGCCCTCCACATTTAGGCTGCTGCCATCCGATGACATCTCCAGGAGGGTATCCCCACCCAATTGCAGGAGCTCCCGGTGACCCAACAACATTACCTCTGAGATTCCCTGCAAGAATGTTTTCTGGTTCTCCTTCCACACAACTCATACCACCGCCGCCAGCAGCGGCCCCAGGTCAACCACCCCAAGCCGTACAGCCCTCGCAGCCCTACTTATACCCCTCTCCTTCACGGCCCATGTCCTACCCTTCTTCACACTATCAACACCAAAATGACTACTATGTCGGTCATGTCCTCGGTGGTAACAACACTAGTGCATCCCAGTATGGCCATCATCTGAATGTGAGCTATGGCGCCACGGCGGGAGTACAAGATCATCATCAGTCCAACAACAACGGTTACAACAACTATACTTGTATTGGTGCTCCGGTCACGCATAGCGGGGGGTTTGGGCAAGGCAGCAGCAGCCTGAGTTCGGAGTTGACTGGATCGGGAGGAGGAGGCGGTGTTGGTGGTGGAGCTAGGGATGGGTCTATGAGCTACTCAGGAACACAACCCCCTCCACCTCCTTCCATCAACCGATTTCAACATGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

28.08

Weight (kDa)

6.48

Isoelectric Point (pI)

56.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	485
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	134, 557
AccBSI	CCGCTC	1 cut(s)	203
AciI	CCGC	7 cut(s)	201, 359, 362, 371, 566, 645, 708
AclWI	GGATC	1 cut(s)	700
AcoI	YGGCCR	1 cut(s)	532
AcyI	GRCGYC	2 cut(s)	117, 558
AfaI	GTAC	3 cut(s)	136, 399, 573
AfiI	CCNNNNNNNGG	3 cut(s)	221, 272, 679
AgsI	TTSAA	2 cut(s)	184, 791
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	3 cut(s)	205, 247, 376
AluBI	AGCT	5 cut(s)	175, 278, 552, 725, 744
AluI	AGCT	5 cut(s)	175, 278, 552, 725, 744
Alw21I	GWGCWC	3 cut(s)	169, 280, 631
Alw26I	GTCTC	4 cut(s)	57, 75, 140, 146
AlwI	GGATC	1 cut(s)	700
AoxI	GGCC	4 cut(s)	208, 372, 437, 532
ApeKI	GCWGC	7 cut(s)	225, 228, 368, 409, 663, 666, 669
Asp700I	GAANNNNTTC	1 cut(s)	325
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	3 cut(s)	209, 373, 438
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	296
AxyI	CCTNAGG	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	534
BanI	GGYRCC	2 cut(s)	134, 557
BanII	GRGCYC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	3 cut(s)	169, 280, 631
BbvI	GCAGC	7 cut(s)	212, 215, 380, 421, 675, 678, 681
BccI	CCATC	4 cut(s)	240, 543, 725, 785
BceAI	ACGGC	4 cut(s)	127, 380, 452, 579
BciT130I	CCWGG	3 cut(s)	207, 249, 378
BciVI	GTATCC	1 cut(s)	267
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	4 cut(s)	57, 75, 140, 146
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	3 cut(s)	197, 516, 726
BfoI	RGCGCY	1 cut(s)	561
BfuI	GTATCC	1 cut(s)	267
Bme1390I	CCNGG	4 cut(s)	207, 249, 282, 378
BmgT120I	GGNCC	3 cut(s)	209, 373, 438
BmiI	GGNNCC	3 cut(s)	136, 375, 559
BmrFI	CCNGG	4 cut(s)	207, 249, 282, 378
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	1 cut(s)	530
BmuI	ACTGGG	1 cut(s)	520
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	282
BsaBI	GATNNNNATC	2 cut(s)	57, 582
BsaHI	GRCGYC	2 cut(s)	117, 558
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	376, 499, 561
BsaWI	WCCGGW	1 cut(s)	631
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 696, 726
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 272, 679
Bse1I	ACTGG	2 cut(s)	526, 694
Bse21I	CCTNAGG	1 cut(s)	130
Bse8I	GATNNNNATC	2 cut(s)	57, 582
BseBI	CCWGG	3 cut(s)	207, 249, 378
BseDI	CCNNGG	3 cut(s)	376, 499, 561
BseGI	GGATG	3 cut(s)	232, 521, 736
BseJI	GATNNNNATC	2 cut(s)	57, 582
BseLI	CCNNNNNNNGG	3 cut(s)	221, 272, 679
BseMII	CTCAG	4 cut(s)	144, 296, 665, 762
BseNI	ACTGG	2 cut(s)	526, 694
BseRI	GAGGAG	5 cut(s)	112, 115, 118, 714, 717
BseXI	GCAGC	7 cut(s)	212, 215, 380, 421, 675, 678, 681
BshFI	GGCC	4 cut(s)	210, 374, 439, 534
BshNI	GGYRCC	2 cut(s)	134, 557
BsiHKAI	GWGCWC	3 cut(s)	169, 280, 631
BsiSI	CCGG	2 cut(s)	282, 632
BslI	CCNNNNNNNGG	3 cut(s)	221, 272, 679
BsmAI	GTCTC	4 cut(s)	57, 75, 140, 146
BsnI	GGCC	4 cut(s)	210, 374, 439, 534
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	169, 280, 631
Bsp143I	GATC	3 cut(s)	52, 577, 692
BspACI	CCGC	7 cut(s)	201, 359, 362, 371, 566, 645, 708
BspANI	GGCC	4 cut(s)	210, 374, 439, 534
BspCNI	CTCAG	4 cut(s)	143, 297, 666, 761
BspLI	GGNNCC	3 cut(s)	136, 375, 559
BspPI	GGATC	1 cut(s)	700
BspT107I	GGYRCC	2 cut(s)	134, 557
BspTNI	GGTCTC	1 cut(s)	75
BsrBI	CCGCTC	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	526, 694
BssECI	CCNNGG	3 cut(s)	376, 499, 561
BssMI	GATC	3 cut(s)	52, 577, 692
BssNI	GRCGYC	2 cut(s)	117, 558
Bst2UI	CCWGG	3 cut(s)	207, 249, 378
Bst4CI	ACNGT	2 cut(s)	164, 602
BstACI	GRCGYC	2 cut(s)	117, 558
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	4 cut(s)	130, 305, 674, 748
BstDSI	CCRYGG	1 cut(s)	561
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	3 cut(s)	232, 521, 736
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	3 cut(s)	55, 580, 695
BstMAI	GTCTC	4 cut(s)	57, 75, 140, 146
BstMBI	GATC	3 cut(s)	52, 577, 692
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 669
BstNI	CCWGG	3 cut(s)	207, 249, 378
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	4 cut(s)	205, 247, 280, 376
BstV1I	GCAGC	7 cut(s)	212, 215, 380, 421, 675, 678, 681
BstV2I	GAAGAC	1 cut(s)	172
Bsu36I	CCTNAGG	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	4 cut(s)	210, 374, 439, 534
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	3 cut(s)	232, 521, 736
Cac8I	GCNNGC	1 cut(s)	366
CfoI	GCGC	1 cut(s)	560
Cfr13I	GGNCC	3 cut(s)	209, 373, 438
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	135, 398, 572
CviAII	CATG	3 cut(s)	442, 494, 794
CviQI	GTAC	3 cut(s)	135, 398, 572
DdeI	CTNAG	4 cut(s)	130, 305, 674, 748
DinI	GGCGCC	1 cut(s)	559
DpnI	GATC	3 cut(s)	54, 579, 694
DpnII	GATC	3 cut(s)	52, 577, 692
DrdI	GACNNNNNNGTC	1 cut(s)	485
DseDI	GACNNNNNNGTC	1 cut(s)	485
EaeI	YGGCCR	1 cut(s)	532
Ecl136II	GAGCTC	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	278
Eco81I	CCTNAGG	1 cut(s)	130
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	3 cut(s)	205, 247, 376
EcoT38I	GRGCYC	1 cut(s)	280
EgeI	GGCGCC	1 cut(s)	559
EheI	GGCGCC	1 cut(s)	559
FaeI	CATG	3 cut(s)	445, 497, 797
FatI	CATG	3 cut(s)	441, 493, 793
FauI	CCCGC	2 cut(s)	559, 638
FbaI	TGATCA	1 cut(s)	52
FokI	GGATG	3 cut(s)	219, 508, 743
FriOI	GRGCYC	1 cut(s)	280
FspBI	CTAG	3 cut(s)	197, 516, 726
GlaI	GCGC	1 cut(s)	559
GsuI	CTGGAG	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	561
HaeIII	GGCC	4 cut(s)	210, 374, 439, 534
HapII	CCGG	2 cut(s)	282, 632
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	560
Hin1I	GRCGYC	2 cut(s)	117, 558
Hin1II	CATG	3 cut(s)	445, 497, 797
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HincII	GTYRAC	2 cut(s)	383, 687
HindII	GTYRAC	2 cut(s)	383, 687
HinfI	GANTC	3 cut(s)	4, 22, 309
HpaII	CCGG	2 cut(s)	282, 632
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	3 cut(s)	98, 383, 687
Hpy188I	TCNGA	4 cut(s)	237, 306, 543, 682
Hpy188III	TCNNGA	3 cut(s)	62, 696, 750
Hpy8I	GTNNAC	3 cut(s)	98, 383, 687
Hpy99I	CGWCG	2 cut(s)	113, 119
HpyAV	CCTTC	4 cut(s)	348, 441, 462, 783
HpyCH4III	ACNGT	2 cut(s)	164, 602
HpyCH4V	TGCA	3 cut(s)	272, 317, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 669
HpyF3I	CTNAG	4 cut(s)	130, 305, 674, 748
Hsp92I	GRCGYC	2 cut(s)	117, 558
Hsp92II	CATG	3 cut(s)	445, 497, 797
HspAI	GCGC	1 cut(s)	558
KasI	GGCGCC	1 cut(s)	557
KpnI	GGTACC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	52, 577, 692
LmnI	GCTCC	5 cut(s)	208, 275, 283, 634, 722
Lsp1109I	GCAGC	7 cut(s)	212, 215, 380, 421, 675, 678, 681
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	3 cut(s)	197, 516, 726
MaeIII	GTNAC	4 cut(s)	284, 506, 602, 634
MalI	GATC	3 cut(s)	54, 579, 694
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	3 cut(s)	52, 577, 692
MboII	GAAGA	2 cut(s)	172, 447
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	3 cut(s)	169, 280, 631
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	2 cut(s)	101, 267
MluNI	TGGCCA	1 cut(s)	534
Mly113I	GGCGCC	1 cut(s)	558
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	615
Mox20I	TGGCCA	1 cut(s)	534
MroXI	GAANNNNTTC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	2 cut(s)	474, 543
Msp20I	TGGCCA	1 cut(s)	534
MspA1I	CMGCKG	2 cut(s)	175, 371
MspI	CCGG	2 cut(s)	282, 632
MspR9I	CCNGG	4 cut(s)	207, 249, 282, 378
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	3 cut(s)	207, 249, 378
MwoI	GCNNNNNNNGC	2 cut(s)	409, 669
NarI	GGCGCC	1 cut(s)	558
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	3 cut(s)	52, 577, 692
NlaIII	CATG	3 cut(s)	445, 497, 797
NlaIV	GGNNCC	3 cut(s)	136, 375, 559
NmuCI	GTSAC	2 cut(s)	284, 634
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	22, 309
PfoI	TCCNGGA	1 cut(s)	247
PleI	GAGTC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	561
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	280
Psp6I	CCWGG	3 cut(s)	205, 247, 376
PspEI	GGTNACC	1 cut(s)	284
PspGI	CCWGG	3 cut(s)	205, 247, 376
PspN4I	GGNNCC	3 cut(s)	136, 375, 559
PspPI	GGNCC	3 cut(s)	209, 373, 438
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	3 cut(s)	136, 399, 573
RsaNI	GTAC	3 cut(s)	135, 398, 572
RseI	CAYNNNNRTG	2 cut(s)	474, 543
SacI	GAGCTC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	52, 577, 692
Sau96I	GGNCC	3 cut(s)	209, 373, 438
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	4 cut(s)	207, 249, 282, 378
SduI	GDGCHC	3 cut(s)	169, 280, 631
SfaNI	GCATC	1 cut(s)	530
SfoI	GGCGCC	1 cut(s)	559
SmiMI	CAYNNNNRTG	2 cut(s)	474, 543
SpeI	ACTAGT	1 cut(s)	515
Sse9I	AATT	2 cut(s)	101, 267
SsiI	CCGC	7 cut(s)	201, 359, 362, 371, 566, 645, 708
SspDI	GGCGCC	1 cut(s)	557
SspMI	CTAG	3 cut(s)	197, 516, 726
SstI	GAGCTC	1 cut(s)	280
StyD4I	CCNGG	4 cut(s)	205, 247, 280, 376
TaaI	ACNGT	2 cut(s)	164, 602
TaqI	TCGA	2 cut(s)	61, 108
TaqII	GACCGA	2 cut(s)	99, 479
TasI	AATT	2 cut(s)	101, 267
TatI	WGTACW	1 cut(s)	571
TauI	GCSGC	3 cut(s)	203, 364, 374
TfiI	GAWTC	2 cut(s)	22, 309
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseFI	GTSAC	2 cut(s)	284, 634
TseI	GCWGC	7 cut(s)	225, 228, 368, 409, 663, 666, 669
Tsp45I	GTSAC	2 cut(s)	284, 634
TspDTI	ATGAA	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	3 cut(s)	197, 516, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.