Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Reverse (-)

56123055 .. 56125167

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G029450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAGGAATCCATTAGACCTCAACAACTTGCCTGATGATCATAATCGAGACAGAGATAGAGATAGAGACCGAGAAAATGGTAAACAATTCATCGACGGCGACTCCTCCTCCTCCTCAGGCCATAGAAAAAAGAAAAGCGGCGGAAAAGATGGAAAAGACGAGAGTGGGAAGGTCTACGAGTGTAGGTTTTGTTCCCTCAGGTTCTGCAAATCTCAAGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAGACAGAGACACTAAACCGTGCTCGTCAGCTGGTCTTCAACAACGATAACCTAGCCGCTCCTGGCCCTCCTCATTTAGGCTGCTGCCATCCGATGACATCTCCAGGAGGGTATCCCCACCCAATTGCAGGAGCTCCCGGTGACCCAACAACATTACCTCTGAGATTCCCTGCAAGAATGTTTTCTGGTTCTCCTTCCACACAACTCATACCACCGCCGCCAGCAGCGGCCCCAGGTCAACCACCGCAAGCGGTACAGCCCTCGCAGCCCTACTTATACCCCTCTCCTTCACGCCCCATGTCCTACCCTTCTTCACACTATCAACACCAAAAGGACTACTATGTCGGTCATGTCCTCGGTGGTAACAACACTAGTGCATCCCAGTATGGCCATCATCTGAATGTGAGCTATGGCGCCACTGCGGGTGTACAAGATCATCATCAGTCCAACAACAACGGTTACAACAACTTTACTTGTATTGGTGCTCCGGTCACGCATAGCGGGGGGTTTGGGCAAGGCAGCAGCAGCCTGAGTTCGGAGTTGACTGGATCGGGAGGAGGAGGCGGTGTTGGTGGTGGAGCTAGGGATGGGTCTATGAGCTACTCAGGAACACAACCCCCTCCACCTCCTTCCATCAACCGATTTCAACATGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

32.5

Weight (kDa)

8.87

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	596
AccB1I	GGYRCC	1 cut(s)	668
AccBSI	CCGCTC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	811
AcoI	YGGCCR	1 cut(s)	643
AcyI	GRCGYC	1 cut(s)	669
AfaI	GTAC	2 cut(s)	510, 684
AfiI	CCNNNNNNNGG	4 cut(s)	253, 332, 383, 790
AgsI	TTSAA	2 cut(s)	295, 902
AhlI	ACTAGT	1 cut(s)	626
AjnI	CCWGG	3 cut(s)	316, 358, 487
AluBI	AGCT	6 cut(s)	218, 286, 389, 663, 836, 855
AluI	AGCT	6 cut(s)	218, 286, 389, 663, 836, 855
Alw21I	GWGCWC	3 cut(s)	280, 391, 742
Alw26I	GTCTC	4 cut(s)	42, 60, 251, 257
AlwI	GGATC	1 cut(s)	811
AlwNI	CAGNNNCTG	1 cut(s)	204
AoxI	GGCC	4 cut(s)	118, 319, 483, 643
ApeKI	GCWGC	7 cut(s)	336, 339, 479, 520, 774, 777, 780
Asp700I	GAANNNNTTC	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	671
AspS9I	GGNCC	2 cut(s)	320, 484
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	1 cut(s)	407
AxyI	CCTNAGG	2 cut(s)	115, 197
BalI	TGGCCA	1 cut(s)	645
BanI	GGYRCC	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	3 cut(s)	280, 391, 742
BbvI	GCAGC	7 cut(s)	323, 326, 491, 532, 786, 789, 792
BccI	CCATC	5 cut(s)	143, 351, 654, 836, 896
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	3 cut(s)	318, 360, 489
BciVI	GTATCC	1 cut(s)	378
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	4 cut(s)	42, 60, 251, 257
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	3 cut(s)	308, 627, 837
BfoI	RGCGCY	1 cut(s)	672
BfuI	GTATCC	1 cut(s)	378
Bme1390I	CCNGG	4 cut(s)	318, 360, 393, 489
BmgT120I	GGNCC	2 cut(s)	320, 484
BmiI	GGNNCC	2 cut(s)	486, 670
BmrFI	CCNGG	4 cut(s)	318, 360, 393, 489
BmrI	ACTGGG	1 cut(s)	631
BmsI	GCATC	1 cut(s)	641
BmuI	ACTGGG	1 cut(s)	631
BpiI	GAAGAC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	393
BsaBI	GATNNNNATC	2 cut(s)	42, 693
BsaHI	GRCGYC	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	487, 610
BsaWI	WCCGGW	1 cut(s)	742
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 92, 116, 122, 807, 837
Bsc4I	CCNNNNNNNGG	4 cut(s)	253, 332, 383, 790
Bse1I	ACTGG	2 cut(s)	637, 805
Bse21I	CCTNAGG	2 cut(s)	115, 197
Bse8I	GATNNNNATC	2 cut(s)	42, 693
BseBI	CCWGG	3 cut(s)	318, 360, 489
BseDI	CCNNGG	2 cut(s)	487, 610
BseGI	GGATG	3 cut(s)	343, 632, 847
BseJI	GATNNNNATC	2 cut(s)	42, 693
BseLI	CCNNNNNNNGG	4 cut(s)	253, 332, 383, 790
BseMII	CTCAG	5 cut(s)	129, 211, 407, 776, 873
BseNI	ACTGG	2 cut(s)	637, 805
BseRI	GAGGAG	7 cut(s)	94, 97, 100, 103, 315, 825, 828
BseXI	GCAGC	7 cut(s)	323, 326, 491, 532, 786, 789, 792
BshFI	GGCC	4 cut(s)	120, 321, 485, 645
BshNI	GGYRCC	1 cut(s)	668
BsiHKAI	GWGCWC	3 cut(s)	280, 391, 742
BsiSI	CCGG	2 cut(s)	393, 743
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	4 cut(s)	253, 332, 383, 790
BsmAI	GTCTC	4 cut(s)	42, 60, 251, 257
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	4 cut(s)	120, 321, 485, 645
Bso31I	GGTCTC	1 cut(s)	60
Bsp1286I	GDGCHC	3 cut(s)	280, 391, 742
Bsp1407I	TGTACA	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	37, 688, 803
BspANI	GGCC	4 cut(s)	120, 321, 485, 645
BspCNI	CTCAG	5 cut(s)	128, 210, 408, 777, 872
BspLI	GGNNCC	2 cut(s)	486, 670
BspPI	GGATC	1 cut(s)	811
BspT107I	GGYRCC	1 cut(s)	668
BspTNI	GGTCTC	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	314
BsrGI	TGTACA	1 cut(s)	682
BsrI	ACTGG	2 cut(s)	637, 805
BssECI	CCNNGG	2 cut(s)	487, 610
BssMI	GATC	3 cut(s)	37, 688, 803
BssNI	GRCGYC	1 cut(s)	669
Bst2UI	CCWGG	3 cut(s)	318, 360, 489
Bst4CI	ACNGT	2 cut(s)	275, 713
BstACI	GRCGYC	1 cut(s)	669
BstAUI	TGTACA	1 cut(s)	682
BstC8I	GCNNGC	2 cut(s)	477, 504
BstDEI	CTNAG	5 cut(s)	115, 197, 416, 785, 859
BstEII	GGTNACC	1 cut(s)	395
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstF5I	GGATG	3 cut(s)	343, 632, 847
BstH2I	RGCGCY	1 cut(s)	672
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	3 cut(s)	40, 691, 806
BstMAI	GTCTC	4 cut(s)	42, 60, 251, 257
BstMBI	GATC	3 cut(s)	37, 688, 803
BstMWI	GCNNNNNNNGC	2 cut(s)	520, 780
BstNI	CCWGG	3 cut(s)	318, 360, 489
BstPI	GGTNACC	1 cut(s)	395
BstSCI	CCNGG	4 cut(s)	316, 358, 391, 487
BstV1I	GCAGC	7 cut(s)	323, 326, 491, 532, 786, 789, 792
BstV2I	GAAGAC	1 cut(s)	283
Bsu36I	CCTNAGG	2 cut(s)	115, 197
BsuI	GTATCC	1 cut(s)	378
BsuRI	GGCC	4 cut(s)	120, 321, 485, 645
BtsCI	GGATG	3 cut(s)	343, 632, 847
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	2 cut(s)	477, 504
CaiI	CAGNNNCTG	1 cut(s)	204
CfoI	GCGC	1 cut(s)	671
Cfr13I	GGNCC	2 cut(s)	320, 484
Csp6I	GTAC	2 cut(s)	509, 683
CviAII	CATG	4 cut(s)	232, 553, 605, 905
CviQI	GTAC	2 cut(s)	509, 683
DdeI	CTNAG	5 cut(s)	115, 197, 416, 785, 859
DinI	GGCGCC	1 cut(s)	670
DpnI	GATC	3 cut(s)	39, 690, 805
DpnII	GATC	3 cut(s)	37, 688, 803
DrdI	GACNNNNNNGTC	1 cut(s)	596
DseDI	GACNNNNNNGTC	1 cut(s)	596
EaeI	YGGCCR	1 cut(s)	643
EciI	GGCGGA	1 cut(s)	156
Ecl136II	GAGCTC	1 cut(s)	389
Eco24I	GRGCYC	1 cut(s)	391
Eco31I	GGTCTC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	389
Eco81I	CCTNAGG	2 cut(s)	115, 197
Eco91I	GGTNACC	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	389
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoO65I	GGTNACC	1 cut(s)	395
EcoRII	CCWGG	3 cut(s)	316, 358, 487
EcoT38I	GRGCYC	1 cut(s)	391
EgeI	GGCGCC	1 cut(s)	670
EheI	GGCGCC	1 cut(s)	670
FaeI	CATG	4 cut(s)	235, 556, 608, 908
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	4 cut(s)	231, 552, 604, 904
FauI	CCCGC	2 cut(s)	670, 749
FbaI	TGATCA	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	174
FokI	GGATG	3 cut(s)	330, 619, 854
FriOI	GRGCYC	1 cut(s)	391
FspBI	CTAG	3 cut(s)	308, 627, 837
GlaI	GCGC	1 cut(s)	670
GsuI	CTGGAG	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	672
HaeIII	GGCC	4 cut(s)	120, 321, 485, 645
HapII	CCGG	2 cut(s)	393, 743
HhaI	GCGC	1 cut(s)	671
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	4 cut(s)	235, 556, 608, 908
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HincII	GTYRAC	2 cut(s)	494, 798
HindII	GTYRAC	2 cut(s)	494, 798
HinfI	GANTC	3 cut(s)	7, 101, 420
HpaII	CCGG	2 cut(s)	393, 743
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	5 cut(s)	83, 175, 494, 683, 798
Hpy188I	TCNGA	4 cut(s)	348, 417, 654, 793
Hpy188III	TCNNGA	3 cut(s)	47, 807, 861
Hpy8I	GTNNAC	5 cut(s)	83, 175, 494, 683, 798
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	5 cut(s)	163, 459, 552, 573, 894
HpyCH4III	ACNGT	2 cut(s)	275, 713
HpyCH4V	TGCA	4 cut(s)	207, 383, 428, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	520, 780
HpyF3I	CTNAG	5 cut(s)	115, 197, 416, 785, 859
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	4 cut(s)	235, 556, 608, 908
HspAI	GCGC	1 cut(s)	669
KasI	GGCGCC	1 cut(s)	668
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	37, 688, 803
LmnI	GCTCC	5 cut(s)	319, 386, 394, 745, 833
Lsp1109I	GCAGC	7 cut(s)	323, 326, 491, 532, 786, 789, 792
LweI	GCATC	1 cut(s)	641
MaeI	CTAG	3 cut(s)	308, 627, 837
MaeIII	GTNAC	4 cut(s)	395, 617, 713, 745
MalI	GATC	3 cut(s)	39, 690, 805
MbiI	CCGCTC	1 cut(s)	314
MboI	GATC	3 cut(s)	37, 688, 803
MboII	GAAGA	2 cut(s)	283, 558
MfeI	CAATTG	1 cut(s)	378
MhlI	GDGCHC	3 cut(s)	280, 391, 742
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	2 cut(s)	86, 378
MluNI	TGGCCA	1 cut(s)	645
Mly113I	GGCGCC	1 cut(s)	669
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	726
Mox20I	TGGCCA	1 cut(s)	645
MroXI	GAANNNNTTC	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	654
Msp20I	TGGCCA	1 cut(s)	645
MspA1I	CMGCKG	2 cut(s)	286, 482
MspI	CCGG	2 cut(s)	393, 743
MspR9I	CCNGG	4 cut(s)	318, 360, 393, 489
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	3 cut(s)	318, 360, 489
MwoI	GCNNNNNNNGC	2 cut(s)	520, 780
NarI	GGCGCC	1 cut(s)	669
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	3 cut(s)	37, 688, 803
NlaIII	CATG	4 cut(s)	235, 556, 608, 908
NlaIV	GGNNCC	2 cut(s)	486, 670
NmuCI	GTSAC	2 cut(s)	395, 745
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	7, 420
PfoI	TCCNGGA	1 cut(s)	358
PleI	GAGTC	1 cut(s)	95
PluTI	GGCGCC	1 cut(s)	672
PpsI	GAGTC	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	391
Psp6I	CCWGG	3 cut(s)	316, 358, 487
PspEI	GGTNACC	1 cut(s)	395
PspGI	CCWGG	3 cut(s)	316, 358, 487
PspN4I	GGNNCC	2 cut(s)	486, 670
PspPI	GGNCC	2 cut(s)	320, 484
PsrI	GAACNNNNNNTAC	2 cut(s)	175, 207
PstNI	CAGNNNCTG	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	2 cut(s)	510, 684
RsaNI	GTAC	2 cut(s)	509, 683
RseI	CAYNNNNRTG	1 cut(s)	654
SacI	GAGCTC	1 cut(s)	391
Sau3AI	GATC	3 cut(s)	37, 688, 803
Sau96I	GGNCC	2 cut(s)	320, 484
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	4 cut(s)	318, 360, 393, 489
SduI	GDGCHC	3 cut(s)	280, 391, 742
SfaNI	GCATC	1 cut(s)	641
SfoI	GGCGCC	1 cut(s)	670
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	2 cut(s)	86, 378
SspDI	GGCGCC	1 cut(s)	668
SspMI	CTAG	3 cut(s)	308, 627, 837
SstI	GAGCTC	1 cut(s)	391
StyD4I	CCNGG	4 cut(s)	316, 358, 391, 487
TaaI	ACNGT	2 cut(s)	275, 713
TaqI	TCGA	2 cut(s)	46, 93
TaqII	GACCGA	2 cut(s)	84, 590
TasI	AATT	2 cut(s)	86, 378
TatI	WGTACW	1 cut(s)	682
TauI	GCSGC	4 cut(s)	141, 314, 475, 485
TfiI	GAWTC	2 cut(s)	7, 420
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	2 cut(s)	395, 745
TseI	GCWGC	7 cut(s)	336, 339, 479, 520, 774, 777, 780
Tsp45I	GTSAC	2 cut(s)	395, 745
TspDTI	ATGAA	2 cut(s)	79, 248
TspRI	CASTG	1 cut(s)	679
XagI	CCTNNNNNAGG	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	436
XspI	CTAG	3 cut(s)	308, 627, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.