Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Reverse (-)

58692069 .. 58694691

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAACCGCCACCGCCAAGAGAGGGAGACAGAGACACTAAACCGTGCTCGTCAGCTGGTCTTCAACAACGATAACCTAGCCGCTCCTGGCCCTCCTCATTTAGGCTGCTGCCATCCGATGACATCTCCAGGAGGGTATCCCCACCCAATTGCAGGAGCTCCCGGTGACCCAACAACATTACCTCTGAGATTCCCTGCAAGAATGTTTTCTGGTTCTCCTTCCACACAACTCATACCACCGCCGCCAGCAGCGGCCCCAGGTCAACCACCGCAGGCCGTACAGCCCTCGCAGCCCTACTTATACCCCTCTCCTTCACGCCCCATGTCCTACCCTTCTTCACACTATCAACACCAAAATGACTACTATGTCGGTCATGTCCTCGGTGGTAACAACACTAGTGCGTCCCAGTATGGCCATCATCTGAATGTGAGCTATGGCGCCACGGCGGGTGTACAAGATCATCATCAGTCCAACAACAACGGTTACAACAACTATACTTGTATTGGTGCTCCGGTCTCGCATAGCGGGGGGTTTGGGCAAGGCAGCAGCAGCCTGAGTTCGGAGTTGACTGGATCGGGAGGAGGAGGCGGTGTTGGTGGTGGAGCTAGGGATGGGTCTATGAGCTACTCAGGAACACAACCCCCTCCACCTCCTTCCATCAACCGATTTCAACATGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

23.78

Weight (kDa)

7.86

Isoelectric Point (pI)

61.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	580
AcoI	YGGCCR	1 cut(s)	412
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	2 cut(s)	279, 453
AfiI	CCNNNNNNNGG	4 cut(s)	22, 101, 152, 559
AgsI	TTSAA	2 cut(s)	64, 671
AhlI	ACTAGT	1 cut(s)	395
AjnI	CCWGG	3 cut(s)	85, 127, 256
AluBI	AGCT	5 cut(s)	55, 158, 432, 605, 624
AluI	AGCT	5 cut(s)	55, 158, 432, 605, 624
Alw21I	GWGCWC	3 cut(s)	49, 160, 511
Alw26I	GTCTC	3 cut(s)	20, 26, 520
AlwI	GGATC	1 cut(s)	580
AoxI	GGCC	4 cut(s)	88, 252, 273, 412
ApeKI	GCWGC	7 cut(s)	105, 108, 248, 289, 543, 546, 549
Asp700I	GAANNNNTTC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	89, 253
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	3 cut(s)	49, 160, 511
BbvI	GCAGC	7 cut(s)	92, 95, 260, 301, 555, 558, 561
BccI	CCATC	4 cut(s)	120, 423, 605, 665
BceAI	ACGGC	2 cut(s)	260, 459
BciT130I	CCWGG	3 cut(s)	87, 129, 258
BciVI	GTATCC	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	3 cut(s)	20, 26, 520
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	3 cut(s)	77, 396, 606
BfoI	RGCGCY	1 cut(s)	441
BfuI	GTATCC	1 cut(s)	147
Bme1390I	CCNGG	4 cut(s)	87, 129, 162, 258
BmgT120I	GGNCC	2 cut(s)	89, 253
BmiI	GGNNCC	2 cut(s)	255, 439
BmrFI	CCNGG	4 cut(s)	87, 129, 162, 258
BmrI	ACTGGG	1 cut(s)	400
BmuI	ACTGGG	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	162
BsaBI	GATNNNNATC	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	3 cut(s)	256, 379, 441
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 101, 152, 559
Bse1I	ACTGG	2 cut(s)	406, 574
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	3 cut(s)	87, 129, 258
BseDI	CCNNGG	3 cut(s)	256, 379, 441
BseGI	GGATG	2 cut(s)	112, 616
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	4 cut(s)	22, 101, 152, 559
BseMII	CTCAG	3 cut(s)	176, 545, 642
BseNI	ACTGG	2 cut(s)	406, 574
BseRI	GAGGAG	3 cut(s)	84, 594, 597
BseXI	GCAGC	7 cut(s)	92, 95, 260, 301, 555, 558, 561
BshFI	GGCC	4 cut(s)	90, 254, 275, 414
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	3 cut(s)	49, 160, 511
BsiSI	CCGG	2 cut(s)	162, 512
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	4 cut(s)	22, 101, 152, 559
BsmAI	GTCTC	3 cut(s)	20, 26, 520
BsmFI	GGGAC	1 cut(s)	388
BsnI	GGCC	4 cut(s)	90, 254, 275, 414
Bso31I	GGTCTC	1 cut(s)	520
Bsp1286I	GDGCHC	3 cut(s)	49, 160, 511
Bsp1407I	TGTACA	1 cut(s)	451
Bsp143I	GATC	2 cut(s)	457, 572
BspANI	GGCC	4 cut(s)	90, 254, 275, 414
BspCNI	CTCAG	3 cut(s)	177, 546, 641
BspLI	GGNNCC	2 cut(s)	255, 439
BspPI	GGATC	1 cut(s)	580
BspT107I	GGYRCC	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	520
BsrBI	CCGCTC	1 cut(s)	83
BsrGI	TGTACA	1 cut(s)	451
BsrI	ACTGG	2 cut(s)	406, 574
BssECI	CCNNGG	3 cut(s)	256, 379, 441
BssMI	GATC	2 cut(s)	457, 572
BssNI	GRCGYC	1 cut(s)	438
Bst2UI	CCWGG	3 cut(s)	87, 129, 258
Bst4CI	ACNGT	2 cut(s)	44, 482
BstACI	GRCGYC	1 cut(s)	438
BstAUI	TGTACA	1 cut(s)	451
BstC8I	GCNNGC	2 cut(s)	246, 273
BstDEI	CTNAG	3 cut(s)	185, 554, 628
BstDSI	CCRYGG	1 cut(s)	441
BstEII	GGTNACC	1 cut(s)	164
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	112, 616
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	2 cut(s)	460, 575
BstMAI	GTCTC	3 cut(s)	20, 26, 520
BstMBI	GATC	2 cut(s)	457, 572
BstMWI	GCNNNNNNNGC	2 cut(s)	289, 549
BstNI	CCWGG	3 cut(s)	87, 129, 258
BstPI	GGTNACC	1 cut(s)	164
BstSCI	CCNGG	4 cut(s)	85, 127, 160, 256
BstV1I	GCAGC	7 cut(s)	92, 95, 260, 301, 555, 558, 561
BstV2I	GAAGAC	1 cut(s)	52
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	4 cut(s)	90, 254, 275, 414
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	112, 616
Cac8I	GCNNGC	2 cut(s)	246, 273
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	89, 253
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	278, 452
CviAII	CATG	3 cut(s)	322, 374, 674
CviQI	GTAC	2 cut(s)	278, 452
DdeI	CTNAG	3 cut(s)	185, 554, 628
DinI	GGCGCC	1 cut(s)	439
DpnI	GATC	2 cut(s)	459, 574
DpnII	GATC	2 cut(s)	457, 572
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
EaeI	YGGCCR	1 cut(s)	412
Ecl136II	GAGCTC	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	158
Eco91I	GGTNACC	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoO65I	GGTNACC	1 cut(s)	164
EcoRII	CCWGG	3 cut(s)	85, 127, 256
EcoT38I	GRGCYC	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
FaeI	CATG	3 cut(s)	325, 377, 677
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	3 cut(s)	321, 373, 673
FauI	CCCGC	2 cut(s)	439, 518
FokI	GGATG	2 cut(s)	99, 623
FriOI	GRGCYC	1 cut(s)	160
FspBI	CTAG	3 cut(s)	77, 396, 606
GlaI	GCGC	1 cut(s)	439
GsuI	CTGGAG	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	4 cut(s)	90, 254, 275, 414
HapII	CCGG	2 cut(s)	162, 512
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	325, 377, 677
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HincII	GTYRAC	2 cut(s)	263, 567
HindII	GTYRAC	2 cut(s)	263, 567
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	2 cut(s)	162, 512
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	3 cut(s)	263, 452, 567
Hpy188I	TCNGA	4 cut(s)	117, 186, 423, 562
Hpy188III	TCNNGA	2 cut(s)	576, 630
Hpy8I	GTNNAC	3 cut(s)	263, 452, 567
HpyAV	CCTTC	4 cut(s)	228, 321, 342, 663
HpyCH4III	ACNGT	2 cut(s)	44, 482
HpyCH4V	TGCA	2 cut(s)	152, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	289, 549
HpyF3I	CTNAG	3 cut(s)	185, 554, 628
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	325, 377, 677
HspAI	GCGC	1 cut(s)	438
KasI	GGCGCC	1 cut(s)	437
Kzo9I	GATC	2 cut(s)	457, 572
LmnI	GCTCC	5 cut(s)	88, 155, 163, 514, 602
Lsp1109I	GCAGC	7 cut(s)	92, 95, 260, 301, 555, 558, 561
MaeI	CTAG	3 cut(s)	77, 396, 606
MaeIII	GTNAC	3 cut(s)	164, 386, 482
MalI	GATC	2 cut(s)	459, 574
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	2 cut(s)	457, 572
MboII	GAAGA	2 cut(s)	52, 327
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	3 cut(s)	49, 160, 511
MlsI	TGGCCA	1 cut(s)	414
MluCI	AATT	1 cut(s)	147
MluNI	TGGCCA	1 cut(s)	414
Mly113I	GGCGCC	1 cut(s)	438
MmeI	TCCRAC	1 cut(s)	495
Mox20I	TGGCCA	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	414
MslI	CAYNNNNRTG	2 cut(s)	354, 423
Msp20I	TGGCCA	1 cut(s)	414
MspA1I	CMGCKG	2 cut(s)	55, 251
MspI	CCGG	2 cut(s)	162, 512
MspR9I	CCNGG	4 cut(s)	87, 129, 162, 258
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	3 cut(s)	87, 129, 258
MwoI	GCNNNNNNNGC	2 cut(s)	289, 549
NarI	GGCGCC	1 cut(s)	438
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	2 cut(s)	457, 572
NlaIII	CATG	3 cut(s)	325, 377, 677
NlaIV	GGNNCC	2 cut(s)	255, 439
NmuCI	GTSAC	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	189
PfoI	TCCNGGA	1 cut(s)	127
PluTI	GGCGCC	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	160
Psp6I	CCWGG	3 cut(s)	85, 127, 256
PspEI	GGTNACC	1 cut(s)	164
PspGI	CCWGG	3 cut(s)	85, 127, 256
PspN4I	GGNNCC	2 cut(s)	255, 439
PspPI	GGNCC	2 cut(s)	89, 253
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	2 cut(s)	279, 453
RsaNI	GTAC	2 cut(s)	278, 452
RseI	CAYNNNNRTG	2 cut(s)	354, 423
SacI	GAGCTC	1 cut(s)	160
Sau3AI	GATC	2 cut(s)	457, 572
Sau96I	GGNCC	2 cut(s)	89, 253
ScrFI	CCNGG	4 cut(s)	87, 129, 162, 258
SduI	GDGCHC	3 cut(s)	49, 160, 511
SetI	ASST	9 cut(s)	57, 78, 160, 184, 262, 434, 607, 626, 652
SfoI	GGCGCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	2 cut(s)	354, 423
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	1 cut(s)	147
SspDI	GGCGCC	1 cut(s)	437
SspMI	CTAG	3 cut(s)	77, 396, 606
SstI	GAGCTC	1 cut(s)	160
StyD4I	CCNGG	4 cut(s)	85, 127, 160, 256
TaaI	ACNGT	2 cut(s)	44, 482
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	1 cut(s)	147
TatI	WGTACW	1 cut(s)	451
TauI	GCSGC	3 cut(s)	83, 244, 254
TfiI	GAWTC	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	7 cut(s)	105, 108, 248, 289, 543, 546, 549
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	3 cut(s)	77, 396, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.