Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Reverse (-)

2812741 .. 2814769

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1040900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCAAACAAGTTGCCGACGACAGCTCCTCCGTACCCCCCACTAGCTCTAAAAGGAGATTATGGGCTTGAATTAATTGATGAGCTTATCGAAGTTGCTTTTGTTTTGTTTGTTGATTGGGGGTTTCACATAGTTGCAGGCAGCTACAGAAAAAAGAAAAGCAATGCAAAAGATGGAAAAGACGAGAGCGGGAAGGTCTACGAGTGTAGGTTTTGCTCCCTCAAGTTCTGCAAATCTCAGGCCCTCGGGGGACACATGAACCGCCACCGTCAAGAAAGGGAGACAGAACAACTAAACCGGGCTCGTCAGTTGGTTTTCAATAACGATAACCTAGCCGCCCCTCCTCACCTAGGATGCTGCCATCCGATTCCCCCAGGAGGGTATCATCATCCGGCTGCTGCAGGCAACAACATTGGTGGTGTTGATCCAACATTACCTCTCAGATTCCCACCAAGAATTTTTTCTGGTTCTTCATCAAACACCCTTATACCGCCGCCACCGGTACCGGCACCGCAGGGAGGCGTACAAGTACAACCGCCTCAACCCTACTTATATCCGTCTGCGTCGCGGCCCATGTCCTACCCTGCTTCTTCCCATTACCCTCATCATCAAGTCAATGACTATTACGTTGGACATGTTCTTAGCAACAGCACTACTGGCACTCCTTCATACGGCAACCCAAATGTAAACTACGGAGTGGCACCGGCGGAGTCCACCAACTACACTTGCATTGGGGCGCCTGTGGGACCAGGAGGCGGTGGAGGTAGTGGTAGTGGTGGTGGTGGTAAAGACGGATCGCTGCACGTGAATCAGGAAGAAGGATTGAATTGGAGCAGGGGCTACGCAGGGACTCCTCCTTCGATCAATCGATTTCAACATGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

31.49

Weight (kDa)

8.46

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	502
AccB1I	GGYRCC	4 cut(s)	502, 508, 700, 736
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	568
AclWI	GGATC	2 cut(s)	419, 802
AcsI	RAATTY	1 cut(s)	456
AcvI	CACGTG	1 cut(s)	805
AcyI	GRCGYC	1 cut(s)	737
AfaI	GTAC	4 cut(s)	35, 504, 525, 531
AfiI	CCNNNNNNNGG	6 cut(s)	350, 377, 378, 518, 671, 755
AflIII	ACRYGT	1 cut(s)	634
AgeI	ACCGGT	1 cut(s)	499
AgsI	TTSAA	4 cut(s)	71, 319, 826, 875
AjnI	CCWGG	2 cut(s)	373, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	445, 477
AluBI	AGCT	4 cut(s)	26, 47, 85, 144
AluI	AGCT	4 cut(s)	26, 47, 85, 144
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	2 cut(s)	419, 802
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	240, 569
ApeKI	GCWGC	5 cut(s)	141, 357, 395, 398, 799
ApoI	RAATTY	1 cut(s)	456
ArsI	GACNNNNNNTTYG	2 cut(s)	841, 873
AseI	ATTAAT	1 cut(s)	74
AsiGI	ACCGGT	1 cut(s)	499
Asp700I	GAANNNNTTC	1 cut(s)	460
Asp718I	GGTACC	1 cut(s)	502
AspA2I	CCTAGG	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	3 cut(s)	241, 570, 746
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	746
AvrII	CCTAGG	1 cut(s)	349
BanI	GGYRCC	4 cut(s)	502, 508, 700, 736
BanII	GRGCYC	1 cut(s)	304
BbrPI	CACGTG	1 cut(s)	805
BbvI	GCAGC	5 cut(s)	153, 344, 382, 385, 786
BccI	CCATC	2 cut(s)	167, 369
BceAI	ACGGC	1 cut(s)	688
BciT130I	CCWGG	2 cut(s)	375, 750
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	3 cut(s)	44, 332, 350
BfmI	CTRYAG	2 cut(s)	145, 399
BfoI	RGCGCY	1 cut(s)	740
BisI	GCNGC	8 cut(s)	142, 336, 358, 396, 399, 494, 569, 800
BlnI	CCTAGG	1 cut(s)	349
BlsI	GCNGC	8 cut(s)	143, 337, 359, 397, 400, 495, 570, 801
Bme1390I	CCNGG	3 cut(s)	299, 375, 750
Bme18I	GGWCC	1 cut(s)	746
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	3 cut(s)	241, 570, 746
BmiI	GGNNCC	5 cut(s)	504, 510, 702, 738, 747
BmrFI	CCNGG	3 cut(s)	299, 375, 750
BmsI	GCATC	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	299
Bsa29I	ATCGAT	1 cut(s)	868
BsaAI	YACGTR	1 cut(s)	805
BsaHI	GRCGYC	1 cut(s)	737
BsaJI	CCNNGG	3 cut(s)	244, 349, 373
BsaWI	WCCGGW	1 cut(s)	499
BsaXI	ACNNNNNCTCC	6 cut(s)	10, 13, 40, 43, 646, 676
Bsc4I	CCNNNNNNNGG	6 cut(s)	350, 377, 378, 518, 671, 755
Bse118I	RCCGGY	3 cut(s)	499, 505, 703
Bse1I	ACTGG	1 cut(s)	661
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	375, 750
BseCI	ATCGAT	1 cut(s)	868
BseDI	CCNNGG	3 cut(s)	244, 349, 373
BseGI	GGATG	3 cut(s)	359, 361, 388
BseLI	CCNNNNNNNGG	6 cut(s)	350, 377, 378, 518, 671, 755
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	2 cut(s)	251, 454
BseNI	ACTGG	1 cut(s)	661
BseRI	GAGGAG	3 cut(s)	18, 333, 843
BseXI	GCAGC	5 cut(s)	153, 344, 382, 385, 786
BsgI	GTGCAG	1 cut(s)	785
Bsh1236I	CGCG	1 cut(s)	568
BshFI	GGCC	2 cut(s)	242, 571
BshNI	GGYRCC	4 cut(s)	502, 508, 700, 736
BshTI	ACCGGT	1 cut(s)	499
BshVI	ATCGAT	1 cut(s)	868
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	5 cut(s)	298, 392, 500, 506, 704
BslFI	GGGAC	3 cut(s)	264, 759, 862
BslI	CCNNNNNNNGG	6 cut(s)	350, 377, 378, 518, 671, 755
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	3 cut(s)	264, 759, 862
BsnI	GGCC	2 cut(s)	242, 571
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	424, 794, 861
BspANI	GGCC	2 cut(s)	242, 571
BspCNI	CTCAG	2 cut(s)	250, 453
BspDI	ATCGAT	1 cut(s)	868
BspFNI	CGCG	1 cut(s)	568
BspLI	GGNNCC	5 cut(s)	504, 510, 702, 738, 747
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	2 cut(s)	419, 802
BspT107I	GGYRCC	4 cut(s)	502, 508, 700, 736
BsrBI	CCGCTC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	169
BsrFI	RCCGGY	3 cut(s)	499, 505, 703
BsrI	ACTGG	1 cut(s)	661
BssAI	RCCGGY	3 cut(s)	499, 505, 703
BssECI	CCNNGG	3 cut(s)	244, 349, 373
BssMI	GATC	3 cut(s)	424, 794, 861
BssNI	GRCGYC	1 cut(s)	737
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	375, 750
Bst4CI	ACNGT	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	737
BstBAI	YACGTR	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	139, 403
BstDEI	CTNAG	3 cut(s)	237, 440, 641
BstENI	CCTNNNNNAGG	1 cut(s)	348
BstF5I	GGATG	3 cut(s)	359, 361, 388
BstFNI	CGCG	1 cut(s)	568
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	3 cut(s)	427, 797, 864
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	3 cut(s)	424, 794, 861
BstMWI	GCNNNNNNNGC	1 cut(s)	657
BstNI	CCWGG	2 cut(s)	375, 750
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	3 cut(s)	297, 373, 748
BstSFI	CTRYAG	2 cut(s)	145, 399
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	5 cut(s)	153, 344, 382, 385, 786
Bsu15I	ATCGAT	1 cut(s)	868
BsuRI	GGCC	2 cut(s)	242, 571
BsuTUI	ATCGAT	1 cut(s)	868
BtsCI	GGATG	3 cut(s)	359, 361, 388
Cac8I	GCNNGC	2 cut(s)	139, 403
CfoI	GCGC	1 cut(s)	739
Cfr10I	RCCGGY	3 cut(s)	499, 505, 703
Cfr13I	GGNCC	3 cut(s)	241, 570, 746
ClaI	ATCGAT	1 cut(s)	868
CseI	GACGC	1 cut(s)	552
Csp6I	GTAC	4 cut(s)	34, 503, 524, 530
CspAI	ACCGGT	1 cut(s)	499
CspCI	CAANNNNNGTGG	2 cut(s)	397, 432
CviAII	CATG	4 cut(s)	256, 574, 635, 878
CviQI	GTAC	4 cut(s)	34, 503, 524, 530
DdeI	CTNAG	3 cut(s)	237, 440, 641
DinI	GGCGCC	1 cut(s)	738
DpnI	GATC	3 cut(s)	426, 796, 863
DpnII	GATC	3 cut(s)	424, 794, 861
EciI	GGCGGA	1 cut(s)	722
Eco130I	CCWWGG	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	746
Eco72I	CACGTG	1 cut(s)	805
Eco88I	CYCGRG	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRII	CCWGG	2 cut(s)	373, 748
EcoT14I	CCWWGG	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	304
EgeI	GGCGCC	1 cut(s)	738
EheI	GGCGCC	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	4 cut(s)	259, 577, 638, 881
FaiI	YATR	9 cut(s)	63, 131, 257, 488, 553, 575, 636, 670, 879
FaqI	GGGAC	3 cut(s)	264, 759, 862
FatI	CATG	4 cut(s)	255, 573, 634, 877
FauI	CCCGC	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	8 cut(s)	142, 336, 358, 396, 399, 494, 569, 800
FokI	GGATG	3 cut(s)	348, 366, 375
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	8 cut(s)	142, 336, 358, 396, 399, 494, 569, 800
FspBI	CTAG	3 cut(s)	44, 332, 350
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	8 cut(s)	142, 336, 358, 396, 399, 494, 569, 800
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	2 cut(s)	242, 571
HapII	CCGG	5 cut(s)	298, 392, 500, 506, 704
HgaI	GACGC	1 cut(s)	552
HhaI	GCGC	1 cut(s)	739
Hin1I	GRCGYC	1 cut(s)	737
Hin1II	CATG	4 cut(s)	259, 577, 638, 881
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HinfI	GANTC	5 cut(s)	367, 444, 710, 808, 850
HpaII	CCGG	5 cut(s)	298, 392, 500, 506, 704
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	3 cut(s)	199, 688, 714
Hpy188I	TCNGA	2 cut(s)	366, 443
Hpy188III	TCNNGA	2 cut(s)	272, 812
Hpy8I	GTNNAC	3 cut(s)	199, 688, 714
Hpy99I	CGWCG	2 cut(s)	22, 568
HpyAV	CCTTC	4 cut(s)	187, 675, 812, 867
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	2 cut(s)	627, 804
HpyCH4V	TGCA	6 cut(s)	137, 167, 231, 401, 729, 802
HpyF10VI	GCNNNNNNNGC	1 cut(s)	657
HpyF3I	CTNAG	3 cut(s)	237, 440, 641
HpySE526I	ACGT	2 cut(s)	627, 804
Hsp92I	GRCGYC	1 cut(s)	737
Hsp92II	CATG	4 cut(s)	259, 577, 638, 881
HspAI	GCGC	1 cut(s)	737
KasI	GGCGCC	1 cut(s)	736
KpnI	GGTACC	1 cut(s)	506
Kzo9I	GATC	3 cut(s)	424, 794, 861
LmnI	GCTCC	3 cut(s)	31, 221, 831
Lsp1109I	GCAGC	5 cut(s)	153, 344, 382, 385, 786
LweI	GCATC	1 cut(s)	344
MaeI	CTAG	3 cut(s)	44, 332, 350
MaeII	ACGT	2 cut(s)	627, 804
MalI	GATC	3 cut(s)	426, 796, 863
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	3 cut(s)	424, 794, 861
MboII	GAAGA	3 cut(s)	462, 582, 827
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	4 cut(s)	71, 75, 456, 826
Mly113I	GGCGCC	1 cut(s)	737
MlyI	GAGTC	2 cut(s)	719, 844
MmeI	TCCRAC	2 cut(s)	452, 610
MroXI	GAANNNNTTC	1 cut(s)	460
MseI	TTAA	1 cut(s)	74
MspI	CCGG	5 cut(s)	298, 392, 500, 506, 704
MspR9I	CCNGG	3 cut(s)	299, 375, 750
MvaI	CCWGG	2 cut(s)	375, 750
MvnI	CGCG	1 cut(s)	568
MwoI	GCNNNNNNNGC	1 cut(s)	657
NarI	GGCGCC	1 cut(s)	737
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	3 cut(s)	424, 794, 861
NlaIII	CATG	4 cut(s)	259, 577, 638, 881
NlaIV	GGNNCC	5 cut(s)	504, 510, 702, 738, 747
NspI	RCATGY	1 cut(s)	638
PciI	ACATGT	1 cut(s)	634
PdmI	GAANNNNTTC	1 cut(s)	460
PfeI	GAWTC	3 cut(s)	367, 444, 808
PinAI	ACCGGT	1 cut(s)	499
PkrI	GCNGC	8 cut(s)	143, 337, 359, 397, 400, 495, 570, 801
PleI	GAGTC	2 cut(s)	718, 844
PluTI	GGCGCC	1 cut(s)	740
PmaCI	CACGTG	1 cut(s)	805
PmlI	CACGTG	1 cut(s)	805
PpsI	GAGTC	2 cut(s)	718, 844
Ppu21I	YACGTR	1 cut(s)	805
PscI	ACATGT	1 cut(s)	634
PshBI	ATTAAT	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	373, 748
PspCI	CACGTG	1 cut(s)	805
PspGI	CCWGG	2 cut(s)	373, 748
PspN4I	GGNNCC	5 cut(s)	504, 510, 702, 738, 747
PspPI	GGNCC	3 cut(s)	241, 570, 746
PstI	CTGCAG	1 cut(s)	403
RsaI	GTAC	4 cut(s)	35, 504, 525, 531
RsaNI	GTAC	4 cut(s)	34, 503, 524, 530
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	8 cut(s)	142, 336, 358, 396, 399, 494, 569, 800
Sau3AI	GATC	3 cut(s)	424, 794, 861
Sau96I	GGNCC	3 cut(s)	241, 570, 746
SchI	GAGTC	2 cut(s)	719, 844
ScrFI	CCNGG	3 cut(s)	299, 375, 750
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	1 cut(s)	344
SfcI	CTRYAG	2 cut(s)	145, 399
SfoI	GGCGCC	1 cut(s)	738
SgrAI	CRCCGGYG	1 cut(s)	703
SinI	GGWCC	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	4 cut(s)	71, 75, 456, 826
SspDI	GGCGCC	1 cut(s)	736
SspMI	CTAG	3 cut(s)	44, 332, 350
StyD4I	CCNGG	3 cut(s)	297, 373, 748
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	2 cut(s)	630, 807
TaqI	TCGA	3 cut(s)	90, 860, 868
TasI	AATT	4 cut(s)	71, 75, 456, 826
TatI	WGTACW	1 cut(s)	529
TauI	GCSGC	3 cut(s)	338, 496, 571
TfiI	GAWTC	3 cut(s)	367, 444, 808
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TseI	GCWGC	5 cut(s)	141, 357, 395, 398, 799
TspDTI	ATGAA	3 cut(s)	272, 462, 657
TspGWI	ACGGA	4 cut(s)	21, 546, 708, 807
VpaK11BI	GGWCC	1 cut(s)	746
VspI	ATTAAT	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	348
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	1 cut(s)	638
XmaJI	CCTAGG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	3 cut(s)	44, 332, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.