AT1G13460

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4615767 .. 4618449
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13460.1

Sequence Viewer

Length: 1479 bp
ATGTGGAAACAGATTCTGAGTAAGCTTCCTAAGAAGTCTTCTTCTAAGAACCATTCTTCTTCATCTAGTTCCACTTCAAAAAGTAGTGATAATGGCGCCAGTAAATCGGGTAATTCTCAAACCCAGAACGCTCCTCCTGTAAAACCTTCTGCTGATTCAGGGTTTAAAGAAGGGAATTTGAAAGGAAATGGTAACGGTTTCACTCCATATGAAGCATTGCCAGGTTTCAAAGATGTTCCTAATGCAGAGAAACAGAACTTGTTTGTGAGAAAACTCAGCTTGTGCTGTGTTGTTTTCGATTTCTCGGATCCAACGAAGAACGTTAAGGAAAAGGATATTAAGCGGCAGACATTGCTTGAGCTTGTGGATTATGTAGCTTCTCCTAATGGAAAGTTTAGTGAAACTGTGATTCAAGAAGTGGTTAGAATGGTTTCTGTTAACATATTCAGAACCTTGAATCCTCAACCGCGCGAGAATAAAGTTATTGATGCGTTAGACTTGGAGGAAGAAGAGCCTTCTATGGATCCTACTTGGCCTCACTTGCAGCTTGTCTATGAAATTCTCCTGCGGCTTATTGCTTCACCAGAGACAGACACCAAGCTGGCTAAGAAATACATTGACCAATCTTTTGTCTCAAGGTTACTTGATTTATTTGATTCAGAGGATCCTAGAGAAAGAGATTGTCTTAAGACCGTTCTACATCGCATCTACGGTAAATTTATGGTTCATCGTCCTTTCATAAGGAAATCCATTAATAACATTTTCTATCGGTTTGTTTTCGAGACTGAGAAACACAATGGGATTGCTGAGTTTCTAGAGATTTTGGGAAGTATCATCAATGGATTTGCTCTGCCGCTTAAAGACGAGCATAAAGTGTTTTTGGTTAGAGCTTTGGTACCTCTTCACAAACCGAAAAGCTTGCAAATGTATCATCAGCAATTGTCTTATTGTATCACACAGTTTGTGGAAAAAGATTGCAAACTCGCTGATACGGTTATAAGGGGACTACTCAAGTCTTGGCCTGTCACAAATAGTTCCAAAGAAGTCATGTTTCTAAACGAGCTAGAGGAAGTATTAGAAGCAACTCAACCACCTGAATTCCAACGGTGTATGGTCCCATTGTTTCGCCAAGTTGCTCGGTGTTTGAACAGTCTCCATTTTCAGGTTGCAGAAAGAGCTTTGTTCTTATGGAACAACGATCATATCGAGAATCTAATAATGCAGAACCGGAAAGTTATTCTTCCAATCATATTCCCTGCATTGGAGAGAAACACTCAGAAGCATTGGAACCAAGCTGTTCATAGCTTGACGTTGAATGTGCAGAAGATCTTTAATGACATTGATGCAGAGTTGTTTAAGGATTGTCTTGCTAAGTTTAGAGAAGATGAATCAAAAGAAGCTGAAATTGGCGCAAAACGTGAGGCAACGTGGAAACGGTTGGAAGAAATTGGTAATCAAAAGCAAAAGAGTTCATTGTAA

Protein Analysis

492

Amino Acids

56.51

Weight (kDa)

8.57

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B56 PF01603 73 - 482 2.1e-189 Protein phosphatase 2A regulatory B subunit (B56 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 998
Acc65I GGTACC 1 cut(s) 895
AccB1I GGYRCC 2 cut(s) 95, 895
AccII CGCG 2 cut(s) 469, 471
AciI CCGC 4 cut(s) 343, 467, 568, 854
AclI AACGTT 1 cut(s) 321
AclWI GGATC 6 cut(s) 302, 315, 518, 531, 659, 672
AcsI RAATTY 4 cut(s) 175, 558, 716, 1097
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 897
AfiI CCNNNNNNNGG 2 cut(s) 1162, 1261
AflII CTTAAG 1 cut(s) 686
AgsI TTSAA 7 cut(s) 78, 181, 229, 413, 457, 1147, 1315
AjnI CCWGG 1 cut(s) 220
AjuI GAANNNNNNNTTGG 2 cut(s) 1389, 1421
AloI GAACNNNNNNTCC 2 cut(s) 442, 474
Alw26I GTCTC 4 cut(s) 581, 637, 776, 1157
AlwI GGATC 6 cut(s) 302, 315, 518, 531, 659, 672
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 2 cut(s) 533, 1019
ApeKI GCWGC 1 cut(s) 544
ApoI RAATTY 4 cut(s) 175, 558, 716, 1097
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
AseI ATTAAT 1 cut(s) 753
Asp700I GAANNNNTTC 1 cut(s) 430
Asp718I GGTACC 1 cut(s) 895
AspLEI GCGC 3 cut(s) 98, 471, 1412
AspS9I GGNCC 1 cut(s) 1114
AsuHPI GGTGA 1 cut(s) 573
AvaII GGWCC 1 cut(s) 1114
BamHI GGATCC 3 cut(s) 307, 523, 664
BanI GGYRCC 2 cut(s) 95, 895
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 556
BcgI CGANNNNNNTGC 2 cut(s) 901, 935
BciT130I CCWGG 1 cut(s) 222
BcoDI GTCTC 4 cut(s) 581, 637, 776, 1157
BfaI CTAG 4 cut(s) 66, 669, 815, 1064
BfoI RGCGCY 1 cut(s) 99
BfrI CTTAAG 1 cut(s) 686
BglII AGATCT 1 cut(s) 1326
BisI GCNGC 4 cut(s) 344, 545, 569, 854
BlsI GCNGC 4 cut(s) 345, 546, 570, 855
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 1114
BmgT120I GGNCC 1 cut(s) 1114
BmiI GGNNCC 7 cut(s) 97, 309, 525, 666, 897, 1116, 1289
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 3 cut(s) 478, 714, 1333
BpiI GAAGAC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 1258, 1290
BpuEI CTTGAG 3 cut(s) 377, 619, 995
BsaHI GRCGYC 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 1227
Bsc4I CCNNNNNNNGG 2 cut(s) 1162, 1261
Bse1I ACTGG 1 cut(s) 99
Bse3DI GCAATG 2 cut(s) 215, 350
BseBI CCWGG 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 1162, 1261
BseMI GCAATG 2 cut(s) 215, 350
BseMII CTCAG 5 cut(s) 8, 289, 777, 798, 1289
BseNI ACTGG 1 cut(s) 99
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 556
BsgI GTGCAG 1 cut(s) 1340
Bsh1236I CGCG 2 cut(s) 469, 471
BshFI GGCC 2 cut(s) 535, 1021
BshNI GGYRCC 2 cut(s) 95, 895
BsiSI CCGG 1 cut(s) 1228
BslFI GGGAC 2 cut(s) 1017, 1100
BslI CCNNNNNNNGG 2 cut(s) 1162, 1261
BsmAI GTCTC 4 cut(s) 581, 637, 776, 1157
BsmFI GGGAC 2 cut(s) 1017, 1100
BsnI GGCC 2 cut(s) 535, 1021
Bsp143I GATC 5 cut(s) 307, 523, 664, 1198, 1326
BspACI CCGC 4 cut(s) 343, 467, 568, 854
BspANI GGCC 2 cut(s) 535, 1021
BspCNI CTCAG 5 cut(s) 9, 288, 778, 799, 1288
BspFNI CGCG 2 cut(s) 469, 471
BspLI GGNNCC 7 cut(s) 97, 309, 525, 666, 897, 1116, 1289
BspPI GGATC 6 cut(s) 302, 315, 518, 531, 659, 672
BspQI GCTCTTC 1 cut(s) 504
BspT107I GGYRCC 2 cut(s) 95, 895
BspTI CTTAAG 1 cut(s) 686
BsrDI GCAATG 2 cut(s) 215, 350
BsrI ACTGG 1 cut(s) 99
BssMI GATC 5 cut(s) 307, 523, 664, 1198, 1326
BssNI GRCGYC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 9 cut(s) 197, 406, 694, 713, 960, 994, 1107, 1151, 1437
Bst6I CTCTTC 2 cut(s) 504, 906
BstACI GRCGYC 1 cut(s) 96
BstAFI CTTAAG 1 cut(s) 686
BstAPI GCANNNNNTGC 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 603, 920
BstDEI CTNAG 9 cut(s) 17, 30, 45, 275, 606, 786, 807, 1275, 1371
BstFNI CGCG 2 cut(s) 469, 471
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 3 cut(s) 98, 471, 1412
BstKTI GATC 5 cut(s) 310, 526, 667, 1201, 1329
BstMAI GTCTC 4 cut(s) 581, 637, 776, 1157
BstMBI GATC 5 cut(s) 307, 523, 664, 1198, 1326
BstMWI GCNNNNNNNGC 3 cut(s) 352, 541, 1175
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstUI CGCG 2 cut(s) 469, 471
BstV1I GCAGC 1 cut(s) 556
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 4 cut(s) 307, 523, 664, 1326
BstYI RGATCY 4 cut(s) 307, 523, 664, 1326
BsuRI GGCC 2 cut(s) 535, 1021
BtgZI GCGATG 1 cut(s) 686
Cac8I GCNNGC 2 cut(s) 603, 920
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 3 cut(s) 98, 471, 1412
Cfr13I GGNCC 1 cut(s) 1114
Csp6I GTAC 1 cut(s) 896
CviAII CATG 1 cut(s) 1048
CviQI GTAC 1 cut(s) 896
DdeI CTNAG 9 cut(s) 17, 30, 45, 275, 606, 786, 807, 1275, 1371
DinI GGCGCC 1 cut(s) 97
DpnI GATC 5 cut(s) 309, 525, 666, 1200, 1328
DpnII GATC 5 cut(s) 307, 523, 664, 1198, 1326
DraI TTTAAA 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 504, 906
EarI CTCTTC 2 cut(s) 504, 906
Eco47I GGWCC 1 cut(s) 1114
EcoRI GAATTC 1 cut(s) 1097
EcoRII CCWGG 1 cut(s) 220
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
FaeI CATG 1 cut(s) 1051
FalI AAGNNNNNCTT 2 cut(s) 1224, 1256
FaqI GGGAC 2 cut(s) 1017, 1100
FatI CATG 1 cut(s) 1047
FauNDI CATATG 1 cut(s) 208
Fnu4HI GCNGC 4 cut(s) 344, 545, 569, 854
Fsp4HI GCNGC 4 cut(s) 344, 545, 569, 854
FspBI CTAG 4 cut(s) 66, 669, 815, 1064
GlaI GCGC 3 cut(s) 97, 470, 1411
GluI GCNGC 4 cut(s) 344, 545, 569, 854
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 2 cut(s) 535, 1021
HapII CCGG 1 cut(s) 1228
HhaI GCGC 3 cut(s) 98, 471, 1412
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 1 cut(s) 1051
Hin6I GCGC 3 cut(s) 96, 469, 1410
HinP1I GCGC 3 cut(s) 96, 469, 1410
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 2 cut(s) 23, 916
HinfI GANTC 7 cut(s) 13, 155, 409, 457, 656, 1210, 1388
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 1 cut(s) 1228
HphI GGTGA 1 cut(s) 573
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 5 cut(s) 18, 307, 449, 661, 1278
Hpy188III TCNNGA 4 cut(s) 413, 781, 815, 1207
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 3 cut(s) 156, 164, 525
HpyCH4III ACNGT 9 cut(s) 197, 406, 694, 713, 960, 994, 1107, 1151, 1437
HpyCH4IV ACGT 4 cut(s) 321, 1310, 1417, 1427
HpyCH4V TGCA 9 cut(s) 245, 544, 922, 978, 1169, 1222, 1259, 1321, 1346
HpyF10VI GCNNNNNNNGC 3 cut(s) 352, 541, 1175
HpyF3I CTNAG 9 cut(s) 17, 30, 45, 275, 606, 786, 807, 1275, 1371
HpySE526I ACGT 4 cut(s) 321, 1310, 1417, 1427
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 1051
HspAI GCGC 3 cut(s) 96, 469, 1410
KasI GGCGCC 1 cut(s) 95
KpnI GGTACC 1 cut(s) 899
KspAI GTTAAC 1 cut(s) 439
Kzo9I GATC 5 cut(s) 307, 523, 664, 1198, 1326
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 3 cut(s) 478, 714, 1333
MaeI CTAG 4 cut(s) 66, 669, 815, 1064
MaeII ACGT 4 cut(s) 321, 1310, 1417, 1427
MaeIII GTNAC 3 cut(s) 191, 639, 1024
MalI GATC 5 cut(s) 309, 525, 666, 1200, 1328
MboI GATC 5 cut(s) 307, 523, 664, 1198, 1326
MfeI CAATTG 1 cut(s) 938
MflI RGATCY 4 cut(s) 307, 523, 664, 1326
MluCI AATT 8 cut(s) 112, 175, 558, 716, 938, 1097, 1404, 1446
Mly113I GGCGCC 1 cut(s) 96
MmeI TCCRAC 3 cut(s) 335, 1126, 1419
MnlI CCTC 8 cut(s) 144, 471, 496, 546, 655, 909, 1060, 1414
MroXI GAANNNNTTC 1 cut(s) 430
MseI TTAA 9 cut(s) 165, 324, 339, 438, 687, 753, 858, 1332, 1356
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 1 cut(s) 1228
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 938
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 2 cut(s) 469, 471
MwoI GCNNNNNNNGC 3 cut(s) 352, 541, 1175
NarI GGCGCC 1 cut(s) 96
NdeI CATATG 1 cut(s) 208
NdeII GATC 5 cut(s) 307, 523, 664, 1198, 1326
NlaIII CATG 1 cut(s) 1051
NlaIV GGNNCC 7 cut(s) 97, 309, 525, 666, 897, 1116, 1289
NmuCI GTSAC 1 cut(s) 1024
PciSI GCTCTTC 1 cut(s) 504
PcsI WCGNNNNNNNCGW 2 cut(s) 311, 1203
PdmI GAANNNNTTC 1 cut(s) 430
PfeI GAWTC 7 cut(s) 13, 155, 409, 457, 656, 1210, 1388
PkrI GCNGC 4 cut(s) 345, 546, 570, 855
PluTI GGCGCC 1 cut(s) 99
PshBI ATTAAT 1 cut(s) 753
PsiI TTATAA 1 cut(s) 998
Psp1406I AACGTT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 7 cut(s) 97, 309, 525, 666, 897, 1116, 1289
PspPI GGNCC 1 cut(s) 1114
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 4 cut(s) 307, 523, 664, 1326
RsaI GTAC 1 cut(s) 897
RsaNI GTAC 1 cut(s) 896
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 9 cut(s) 165, 324, 339, 438, 687, 753, 858, 1332, 1356
SatI GCNGC 4 cut(s) 344, 545, 569, 854
Sau3AI GATC 5 cut(s) 307, 523, 664, 1198, 1326
Sau96I GGNCC 1 cut(s) 1114
ScrFI CCNGG 1 cut(s) 222
SfaNI GCATC 3 cut(s) 478, 714, 1333
SfoI GGCGCC 1 cut(s) 97
SinI GGWCC 1 cut(s) 1114
SmlI CTYRAG 4 cut(s) 356, 634, 686, 1010
SmoI CTYRAG 4 cut(s) 356, 634, 686, 1010
Sse9I AATT 8 cut(s) 112, 175, 558, 716, 938, 1097, 1404, 1446
SsiI CCGC 4 cut(s) 343, 467, 568, 854
SspDI GGCGCC 1 cut(s) 95
SspMI CTAG 4 cut(s) 66, 669, 815, 1064
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 9 cut(s) 197, 406, 694, 713, 960, 994, 1107, 1151, 1437
TaiI ACGT 4 cut(s) 324, 1313, 1420, 1430
TaqI TCGA 3 cut(s) 297, 780, 1206
TasI AATT 8 cut(s) 112, 175, 558, 716, 938, 1097, 1404, 1446
TauI GCSGC 3 cut(s) 346, 571, 856
TfiI GAWTC 7 cut(s) 13, 155, 409, 457, 656, 1210, 1388
Tru1I TTAA 9 cut(s) 165, 324, 339, 438, 687, 753, 858, 1332, 1356
Tru9I TTAA 9 cut(s) 165, 324, 339, 438, 687, 753, 858, 1332, 1356
TseFI GTSAC 1 cut(s) 1024
TseI GCWGC 1 cut(s) 544
Tsp45I GTSAC 1 cut(s) 1024
TspDTI ATGAA 8 cut(s) 51, 225, 570, 716, 727, 1289, 1401, 1461
Vha464I CTTAAG 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 1114
VspI ATTAAT 1 cut(s) 753
XapI RAATTY 4 cut(s) 175, 558, 716, 1097
XbaI TCTAGA 1 cut(s) 814
XmnI GAANNNNTTC 1 cut(s) 430
XspI CTAG 4 cut(s) 66, 669, 815, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.