MD17G1018300.v1.1

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
1429838 .. 1433600
3763 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1018300.v1.1.491

Sequence Viewer

Length: 1545 bp
ATGATCAAACAGATACTTAATAGGCTCCCGAGGAAGCCCAAGTCATCCGAGCATCGCGAGGGAGGGTCCTCTAACGCTAATTCAAATGCTTCCACCGGTTCAAGAGGCAACTCTATATCAAGTAACAAGTATGCGAGCTCGAGTACTACTTTTTCGAGTGCTACTTCTACTCCGAACTTTGGAGTAAATGCGAATTCGAAGCTTAATGGGAACTCATTGGCTTCTCCATATGAGGCATTGCCTAGTTTCAAAGATGTCCCGAATGCAGAGAAGCAGAATTTGTTGATAAAAAAGTTGAACTTGTGTTGTGTTGTCTTTGACTTCAGTGACCCAACGAAGAACATCAAGGAAAAGGAGATAAAGCGACAGACATTGGTAGAGCTTGTGGATTACATTGCTTCTGCTAATGGGAAATTCCCAGAAACTGTCGTGCAAGAAATCGTAAAGATGGTGTGCATAAATTTATTTAGAACACTCAGTTCTCCTCCCCTTGAAAACAAAGCATTAGAGGCCTTTGACGTAGAAGAGGAAGAGCCCTTGATGGACCCAGCATGGCCGCACTTGCAAGTTGTGTATGAATTCTTCCTGAGGTTTGTGGCATCACCTGAGACGGATGCAAAGTTGGCTAAGAGGTACATAGATCACTCTTTTGTTCTCAGGTTGTTAGGTCTTTTCGATTCAGAGGACCACAGAGAGAGGGATTACTTGAAAACGGTTCTGCACCGCATCTATGGGAAATTTATGGTGCACCGCCCGTTCATAAGGAAAGCAATCAACAACATCTTCTATAATTTTATTTTTGAAACTGAAAAGCATAATGGGATTGCAGAGCTGTTAGAGATTTTGGGAAGTATAATAAACGGTTTTGCTCTGCCACTGAAAGAAGAGCACAAGCTCTTTCTTGTTCGAGTGCTTATTCCACTTCACAAACCAAAATGCATACCCTTGTACCACCAGCAGTTGTCATACTGTATTACTCAATTTGTGGAGAAAGACGGCAAACTTGCTGATACAATAATTCGTGGTTTACTAAAATATTGGCCTATTACAAATAGTTCTAAGGAGGTCATGTTCTTGGGTGAACTGGAAGAAGTTTTAGAGGCAACTCAGCCTGCAGAGTTTCAGCGCTGTATGGTACCGCTGTTTCGCCAGATTGGCCGTTGCTTGAGCAGTTCACATTTTCAGGTGGCAGAGAGAGCACTGTTCTTATGGAATAATGATCACATTGCAAACCTAATCAAACAGAATCGCCATGTCTTACTGCCAATCATATTCCCTTCATTGGAGAAAAATGCAAGAAGCCACTGGAACCAGGCAGTACAGAGCCTGACACTAAATGTCCGTAAGATTTTCTCCGATATTGACCCTGAGCTTTTTGAGGAATGTTTGCTCAACTTCCAGGAAGATGAAGCACAAGCGAGTGTAAAAAGTTTGAAGCGTCAAAACACTTGGAAACGTTTGGAAGAGATTGCGGCAAAGAATGCTACAAGCACTGAAGCAGTGCTTGTTTCCCCCAGAGGAGCCTCCGGCAAAACTTCTGGCTAG

Protein Analysis

515

Amino Acids

58.44

Weight (kDa)

8.59

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B56 PF01603 80 - 491 2.6e-192 Protein phosphatase 2A regulatory B subunit (B56 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1135
AccB1I GGYRCC 1 cut(s) 1135
AccII CGCG 1 cut(s) 57
AciI CCGC 5 cut(s) 557, 724, 751, 1139, 1472
AclI AACGTT 1 cut(s) 1456
AcoI YGGCCR 2 cut(s) 554, 1156
AcsI RAATTY 6 cut(s) 193, 277, 413, 460, 578, 737
AcuI CTGAAG 2 cut(s) 307, 1515
AfaI GTAC 5 cut(s) 145, 635, 950, 1137, 1320
AfeI AGCGCT 1 cut(s) 1127
AfiI CCNNNNNNNGG 2 cut(s) 179, 1282
AgeI ACCGGT 1 cut(s) 95
AgsI TTSAA 8 cut(s) 84, 102, 250, 298, 494, 709, 803, 1435
AjnI CCWGG 2 cut(s) 1311, 1398
AloI GAACNNNNNNTCC 2 cut(s) 1055, 1087
AluBI AGCT 6 cut(s) 138, 202, 382, 832, 895, 1372
AluI AGCT 6 cut(s) 138, 202, 382, 832, 895, 1372
Alw21I GWGCWC 4 cut(s) 140, 750, 891, 1201
Alw26I GTCTC 1 cut(s) 602
Alw44I GTGCAC 1 cut(s) 746
AlwNI CAGNNNCTG 2 cut(s) 425, 1327
Ama87I CYCGRG 2 cut(s) 28, 139
Aor51HI AGCGCT 1 cut(s) 1127
AoxI GGCC 4 cut(s) 510, 554, 1040, 1156
ApaLI GTGCAC 1 cut(s) 746
ApoI RAATTY 6 cut(s) 193, 277, 413, 460, 578, 737
AsiGI ACCGGT 1 cut(s) 95
Asp718I GGTACC 1 cut(s) 1135
AspLEI GCGC 1 cut(s) 1128
AspS9I GGNCC 3 cut(s) 66, 544, 685
AsuHPI GGTGA 2 cut(s) 594, 1091
AsuII TTCGAA 1 cut(s) 197
AvaI CYCGRG 2 cut(s) 28, 139
AvaII GGWCC 3 cut(s) 66, 544, 685
AxyI CCTNAGG 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 750
BaeI ACNNNNGTAYC 4 cut(s) 932, 965, 1127, 1160
BanI GGYRCC 1 cut(s) 1135
BanII GRGCYC 2 cut(s) 140, 537
BarI GAAGNNNNNNTAC 2 cut(s) 566, 598
Bbv12I GWGCWC 4 cut(s) 140, 750, 891, 1201
BccI CCATC 2 cut(s) 442, 535
BceAI ACGGC 2 cut(s) 1012, 1143
BciT130I CCWGG 2 cut(s) 1313, 1400
BclI TGATCA 2 cut(s) 3, 1219
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 2 cut(s) 243, 1543
BfmI CTRYAG 1 cut(s) 1113
BfoI RGCGCY 1 cut(s) 1129
BglI GCCNNNNNGGC 1 cut(s) 1155
BisI GCNGC 2 cut(s) 557, 1473
BlsI GCNGC 2 cut(s) 558, 1474
BmcAI AGTACT 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 1313, 1400
Bme18I GGWCC 3 cut(s) 66, 544, 685
BmeT110I CYCGRG 2 cut(s) 28, 139
BmgT120I GGNCC 3 cut(s) 66, 544, 685
BmiI GGNNCC 6 cut(s) 26, 67, 546, 1137, 1310, 1522
BmrFI CCNGG 2 cut(s) 1313, 1400
BmsI GCATC 4 cut(s) 61, 604, 608, 735
Bpu10I CCTNAGC 1 cut(s) 1368
Bpu14I TTCGAA 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 1186
BsaJI CCNNGG 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 95
BsaXI ACNNNNNCTCC 4 cut(s) 154, 184, 1055, 1085
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 1282
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 1089, 1310
Bse21I CCTNAGG 1 cut(s) 587
Bse3DI GCAATG 3 cut(s) 236, 393, 1224
BseBI CCWGG 2 cut(s) 1313, 1400
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 2 cut(s) 44, 619
BseLI CCNNNNNNNGG 2 cut(s) 179, 1282
BseMI GCAATG 3 cut(s) 236, 393, 1224
BseMII CTCAG 6 cut(s) 490, 578, 597, 670, 1121, 1359
BseNI ACTGG 2 cut(s) 1089, 1310
BseRI GAGGAG 2 cut(s) 474, 1533
BseSI GKGCMC 1 cut(s) 750
BseYI CCCAGC 1 cut(s) 547
BsgI GTGCAG 1 cut(s) 704
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 4 cut(s) 512, 556, 1042, 1158
BshNI GGYRCC 1 cut(s) 1135
BshTI ACCGGT 1 cut(s) 95
BsiHKAI GWGCWC 4 cut(s) 140, 750, 891, 1201
BsiHKCI CYCGRG 2 cut(s) 28, 139
BsiSI CCGG 2 cut(s) 96, 1527
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 2 cut(s) 179, 1282
BsmAI GTCTC 1 cut(s) 602
BsmBI CGTCTC 1 cut(s) 602
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 2 cut(s) 268, 1486
BsnI GGCC 4 cut(s) 512, 556, 1042, 1158
BsoBI CYCGRG 2 cut(s) 28, 139
Bsp119I TTCGAA 1 cut(s) 197
Bsp1286I GDGCHC 5 cut(s) 140, 537, 750, 891, 1201
Bsp143I GATC 3 cut(s) 3, 640, 1219
Bsp68I TCGCGA 1 cut(s) 57
BspACI CCGC 5 cut(s) 557, 724, 751, 1139, 1472
BspANI GGCC 4 cut(s) 512, 556, 1042, 1158
BspCNI CTCAG 6 cut(s) 489, 579, 598, 669, 1120, 1360
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 6 cut(s) 26, 67, 546, 1137, 1310, 1522
BspMAI CTGCAG 1 cut(s) 1117
BspQI GCTCTTC 2 cut(s) 525, 879
BspT104I TTCGAA 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 1135
BsrDI GCAATG 3 cut(s) 236, 393, 1224
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 2 cut(s) 1089, 1310
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 3 cut(s) 3, 640, 1219
Bst2UI CCWGG 2 cut(s) 1313, 1400
Bst4CI ACNGT 5 cut(s) 427, 715, 863, 971, 1203
Bst6I CTCTTC 4 cut(s) 519, 525, 879, 1458
BstAPI GCANNNNNTGC 1 cut(s) 1481
BstBI TTCGAA 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 136, 1113
BstDEI CTNAG 8 cut(s) 476, 587, 606, 627, 656, 1059, 1107, 1368
BstF5I GGATG 2 cut(s) 44, 619
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 1129
BstHHI GCGC 1 cut(s) 1128
BstKTI GATC 3 cut(s) 6, 643, 1222
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 3 cut(s) 3, 640, 1219
BstMWI GCNNNNNNNGC 6 cut(s) 509, 562, 623, 1155, 1196, 1481
BstNI CCWGG 2 cut(s) 1313, 1400
BstSCI CCNGG 2 cut(s) 1311, 1398
BstSFI CTRYAG 1 cut(s) 1113
BstSLI GKGCMC 1 cut(s) 750
BstUI CGCG 1 cut(s) 57
Bsu36I CCTNAGG 1 cut(s) 587
BsuRI GGCC 4 cut(s) 512, 556, 1042, 1158
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 2 cut(s) 44, 619
BtsI GCAGTG 1 cut(s) 1506
BtsIMutI CAGTG 6 cut(s) 331, 875, 1199, 1303, 1491, 1506
BtuMI TCGCGA 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 136, 1113
CaiI CAGNNNCTG 2 cut(s) 425, 1327
CfoI GCGC 1 cut(s) 1128
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 3 cut(s) 66, 544, 685
CseI GACGC 1 cut(s) 1427
Csp6I GTAC 5 cut(s) 144, 634, 949, 1136, 1319
CspAI ACCGGT 1 cut(s) 95
CviAII CATG 3 cut(s) 552, 1069, 1253
CviQI GTAC 5 cut(s) 144, 634, 949, 1136, 1319
DdeI CTNAG 8 cut(s) 476, 587, 606, 627, 656, 1059, 1107, 1368
DpnI GATC 3 cut(s) 5, 642, 1221
DpnII GATC 3 cut(s) 3, 640, 1219
EaeI YGGCCR 2 cut(s) 554, 1156
Eam1104I CTCTTC 4 cut(s) 519, 525, 879, 1458
EarI CTCTTC 4 cut(s) 519, 525, 879, 1458
Ecl136II GAGCTC 1 cut(s) 138
Eco147I AGGCCT 1 cut(s) 512
Eco24I GRGCYC 2 cut(s) 140, 537
Eco47I GGWCC 3 cut(s) 66, 544, 685
Eco47III AGCGCT 1 cut(s) 1127
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 2 cut(s) 307, 1515
Eco81I CCTNAGG 1 cut(s) 587
Eco88I CYCGRG 2 cut(s) 28, 139
EcoICRI GAGCTC 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 66
EcoRI GAATTC 2 cut(s) 193, 578
EcoRII CCWGG 2 cut(s) 1311, 1398
EcoT22I ATGCAT 1 cut(s) 941
EcoT38I GRGCYC 2 cut(s) 140, 537
Esp3I CGTCTC 1 cut(s) 602
FaeI CATG 3 cut(s) 555, 1072, 1256
FalI AAGNNNNNCTT 4 cut(s) 284, 316, 1488, 1520
FaqI GGGAC 1 cut(s) 242
FatI CATG 3 cut(s) 551, 1068, 1252
FauNDI CATATG 1 cut(s) 229
FbaI TGATCA 2 cut(s) 3, 1219
Fnu4HI GCNGC 2 cut(s) 557, 1473
FokI GGATG 2 cut(s) 31, 626
FriOI GRGCYC 2 cut(s) 140, 537
Fsp4HI GCNGC 2 cut(s) 557, 1473
FspBI CTAG 2 cut(s) 243, 1543
GlaI GCGC 1 cut(s) 1127
GluI GCNGC 2 cut(s) 557, 1473
GsaI CCCAGC 1 cut(s) 551
HaeII RGCGCY 1 cut(s) 1129
HaeIII GGCC 4 cut(s) 512, 556, 1042, 1158
HapII CCGG 2 cut(s) 96, 1527
HgaI GACGC 1 cut(s) 1427
HhaI GCGC 1 cut(s) 1128
Hin1II CATG 3 cut(s) 555, 1072, 1256
Hin6I GCGC 1 cut(s) 1126
HinP1I GCGC 1 cut(s) 1126
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 2 cut(s) 677, 1246
HpaII CCGG 2 cut(s) 96, 1527
HphI GGTGA 2 cut(s) 594, 1091
Hpy166II GTNNAC 4 cut(s) 748, 1028, 1082, 1175
Hpy188I TCNGA 4 cut(s) 49, 174, 682, 1357
Hpy188III TCNNGA 5 cut(s) 28, 56, 102, 259, 586
Hpy8I GTNNAC 4 cut(s) 748, 1028, 1082, 1175
HpyAV CCTTC 1 cut(s) 1287
HpyCH4III ACNGT 5 cut(s) 427, 715, 863, 971, 1203
HpyCH4IV ACGT 2 cut(s) 519, 1456
HpyF10VI GCNNNNNNNGC 6 cut(s) 509, 562, 623, 1155, 1196, 1481
HpyF3I CTNAG 8 cut(s) 476, 587, 606, 627, 656, 1059, 1107, 1368
HpySE526I ACGT 2 cut(s) 519, 1456
Hsp92II CATG 3 cut(s) 555, 1072, 1256
HspAI GCGC 1 cut(s) 1126
KpnI GGTACC 1 cut(s) 1139
Ksp22I TGATCA 2 cut(s) 3, 1219
Kzo9I GATC 3 cut(s) 3, 640, 1219
LguI GCTCTTC 2 cut(s) 525, 879
LmnI GCTCC 2 cut(s) 30, 1520
LweI GCATC 4 cut(s) 61, 604, 608, 735
MaeI CTAG 2 cut(s) 243, 1543
MaeII ACGT 2 cut(s) 519, 1456
MaeIII GTNAC 2 cut(s) 122, 326
MalI GATC 3 cut(s) 5, 642, 1221
MboI GATC 3 cut(s) 3, 640, 1219
MboII GAAGA 9 cut(s) 349, 536, 542, 574, 775, 896, 1100, 1415, 1475
MhlI GDGCHC 5 cut(s) 140, 537, 750, 891, 1201
Mph1103I ATGCAT 1 cut(s) 941
MseI TTAA 2 cut(s) 18, 204
MspA1I CMGCKG 1 cut(s) 1141
MspI CCGG 2 cut(s) 96, 1527
MspR9I CCNGG 2 cut(s) 1313, 1400
Mva1269I GAATGC 2 cut(s) 268, 1486
MvaI CCWGG 2 cut(s) 1313, 1400
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 6 cut(s) 509, 562, 623, 1155, 1196, 1481
NdeI CATATG 1 cut(s) 229
NdeII GATC 3 cut(s) 3, 640, 1219
NlaIII CATG 3 cut(s) 555, 1072, 1256
NlaIV GGNNCC 6 cut(s) 26, 67, 546, 1137, 1310, 1522
NmuCI GTSAC 1 cut(s) 326
NruI TCGCGA 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 941
NspV TTCGAA 1 cut(s) 197
PaeR7I CTCGAG 1 cut(s) 139
PceI AGGCCT 1 cut(s) 512
PciSI GCTCTTC 2 cut(s) 525, 879
PctI GAATGC 2 cut(s) 268, 1486
PfeI GAWTC 2 cut(s) 677, 1246
PfoI TCCNGGA 1 cut(s) 1398
PinAI ACCGGT 1 cut(s) 95
PkrI GCNGC 2 cut(s) 558, 1474
PpuMI RGGWCCY 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 140
Psp1406I AACGTT 1 cut(s) 1456
Psp5II RGGWCCY 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 1311, 1398
PspFI CCCAGC 1 cut(s) 547
PspGI CCWGG 2 cut(s) 1311, 1398
PspN4I GGNNCC 6 cut(s) 26, 67, 546, 1137, 1310, 1522
PspPI GGNCC 3 cut(s) 66, 544, 685
PspPPI RGGWCCY 1 cut(s) 66
PspXI VCTCGAGB 1 cut(s) 139
PstI CTGCAG 1 cut(s) 1117
PstNI CAGNNNCTG 2 cut(s) 425, 1327
RruI TCGCGA 1 cut(s) 57
RsaI GTAC 5 cut(s) 145, 635, 950, 1137, 1320
RsaNI GTAC 5 cut(s) 144, 634, 949, 1136, 1319
SacI GAGCTC 1 cut(s) 140
SapI GCTCTTC 2 cut(s) 525, 879
SaqAI TTAA 2 cut(s) 18, 204
SatI GCNGC 2 cut(s) 557, 1473
Sau3AI GATC 3 cut(s) 3, 640, 1219
Sau96I GGNCC 3 cut(s) 66, 544, 685
ScaI AGTACT 1 cut(s) 145
ScrFI CCNGG 2 cut(s) 1313, 1400
SduI GDGCHC 5 cut(s) 140, 537, 750, 891, 1201
SfaNI GCATC 4 cut(s) 61, 604, 608, 735
SfcI CTRYAG 1 cut(s) 1113
Sfr274I CTCGAG 1 cut(s) 139
SfuI TTCGAA 1 cut(s) 197
SinI GGWCC 3 cut(s) 66, 544, 685
SlaI CTCGAG 1 cut(s) 139
SmlI CTYRAG 2 cut(s) 139, 1165
SmoI CTYRAG 2 cut(s) 139, 1165
SseBI AGGCCT 1 cut(s) 512
SsiI CCGC 5 cut(s) 557, 724, 751, 1139, 1472
SspI AATATT 1 cut(s) 1037
SspMI CTAG 2 cut(s) 243, 1543
SstI GAGCTC 1 cut(s) 140
StuI AGGCCT 1 cut(s) 512
StyD4I CCNGG 2 cut(s) 1311, 1398
TaaI ACNGT 5 cut(s) 427, 715, 863, 971, 1203
TaiI ACGT 2 cut(s) 522, 1459
TaqI TCGA 5 cut(s) 140, 155, 197, 675, 907
TatI WGTACW 2 cut(s) 143, 1318
TauI GCSGC 2 cut(s) 559, 1475
TfiI GAWTC 2 cut(s) 677, 1246
Tru1I TTAA 2 cut(s) 18, 204
Tru9I TTAA 2 cut(s) 18, 204
TscAI CASTG 6 cut(s) 331, 882, 1206, 1310, 1498, 1506
TseFI GTSAC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 4 cut(s) 591, 748, 1269, 1422
TspGWI ACGGA 2 cut(s) 626, 1331
TspRI CASTG 6 cut(s) 331, 882, 1206, 1310, 1498, 1506
VneI GTGCAC 1 cut(s) 746
VpaK11BI GGWCC 3 cut(s) 66, 544, 685
XapI RAATTY 6 cut(s) 193, 277, 413, 460, 578, 737
XhoI CTCGAG 1 cut(s) 139
XspI CTAG 2 cut(s) 243, 1543
ZrmI AGTACT 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.