Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001125

Physical Location & Seq

Genomic Coordinates Forward (+)

70053590 .. 70055251

Gene Structure 1662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0575500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGACGATGTCTCCGCCCAGAGTACAAGTGAATGAACACATAGACCTCAATGAAACCGAGACCAAGATCTTCGATATCCTTCTCAAAACACTTTGCCATAATGGCCTTGAGAACCTGCAGCTTCATGTTGCTGATGGATGGGTCCGTGATAAGCTTCTGGGAAAAGACTATGGGGACATTGATTTTACAGTTGAAGACATGAGGGGAATCAAATTTGCTGAGAAGGTGAAAGACTACTTGTACTCTGTTGGGAAGGAGCAAGCAATCACTTATTTTCCAGGCAAATTACAACGTGTGGCAGCGGCGAGGATGAGCATGTTTAATATATGGCTCGATTTTCTTAAGCTAGGGGGTGAAAATAACAGTGACAATAGCCCCATTAGTTCCACTGATGAGTTGAATAATTTGCTTTGCATCTTTACAGCAAAAATATGCCACAGAAAAGAGAAGGATGCATGTAGAAGAGATATAACCATTAACAGCTTGTTGTGCAATATCAATTCAAAATCAGTTGAAGATCATACTGGAAGAGGAACTGCAGATCTAAAAGAAGGAAGAATAGCAACTACTACACCACCTGAGCTTTCACTTGTGGAGGATCCTAAACGAGTTCTTCGTGCTATCCGTTATGGGGCCAAGTTTGGTTTTTTTCTCGACAATGATATAAAGAAAGCTGCTGCAAGTGATGAAGTGAAAGCTGCTCTGATGTCGAAAGTTAGCAGAGATAGGATCAATGTTGAATCTGAATACCAGGATCAATCCTCAGTTGCTGATGCATTTATGATCAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

264

Amino Acids

29.83

Weight (kDa)

6.25

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	42 - 187	3.1e-18	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13460 AT1G13460 AT3G26020 AT3G26020 AT3G26020 AT3G26020
fragaria_vesca	FvH4_4g24551 FvH4_4g24551 FvH4_4g24551 FvH4_4g24560 FvH4_4g24560 FvH4_6g52600 FvH4_6g52600 FvH4_6g52600 FvH4_6g52600
malus_domestica	MD09G1017500.v1.1 MD13G1110300.v1.1 MD13G1110400.v1.1 MD16G1110300.v1.1 MD16G1110400.v1.1 MD17G1018300.v1.1
prunus_persica	Prupe.1G234200_v2.0.a1 Prupe.1G234200_v2.0.a1 Prupe.1G234200_v2.0.a1 Prupe.1G234200_v2.0.a1 Prupe.1G234400_v2.0.a1 Prupe.1G234400_v2.0.a1 Prupe.1G234400_v2.0.a1 Prupe.3G299400_v2.0.a1 Prupe.3G299400_v2.0.a1
pyrus_communis	pycom111g01440 pycom13g09600 pycom13g09610 pycom16g09370 pycom16g09380
rosa_chinensis	RchiOBHm_Chr2g0174161 RchiOBHm_Chr4g0431471 RchiOBHm_Chr4g0431481
rosa_laevigata	RLG00000006911 RLG00000022252
rosa_multiflora	Rmu_sc0007885.1_g000009 Rmu_sc0007885.1_g000011 Rmu_ssc0000198.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078400 Rroxscaffold_5G00372930
rosa_rugosa	Rorug02G0575500
rosa_samantha	Rh2AG654900 Rh2BG666100 Rh2CG630300 Rh2DG680700 Rh4AG306600 Rh4BG314600 Rh4BG314700 Rh4CG330000 Rh4DG309800
rosa_wichuraiana	Rw2G053750 Rw4G026610 Rw4G026620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	123
AciI	CCGC	2 cut(s)	14, 302
AclWI	GGATC	4 cut(s)	593, 606, 737, 762
AcsI	RAATTY	1 cut(s)	212
AfaI	GTAC	2 cut(s)	24, 242
AfiI	CCNNNNNNNGG	1 cut(s)	631
AflII	CTTAAG	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	5 cut(s)	194, 400, 504, 515, 740
AjnI	CCWGG	2 cut(s)	277, 750
AluBI	AGCT	7 cut(s)	121, 154, 346, 483, 583, 674, 698
AluI	AGCT	7 cut(s)	121, 154, 346, 483, 583, 674, 698
Alw26I	GTCTC	2 cut(s)	15, 53
AlwI	GGATC	4 cut(s)	593, 606, 737, 762
AlwNI	CAGNNNCTG	1 cut(s)	770
AoxI	GGCC	2 cut(s)	103, 633
ApeKI	GCWGC	5 cut(s)	118, 299, 674, 677, 698
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	142, 633
AsuHPI	GGTGA	2 cut(s)	238, 365
AvaII	GGWCC	1 cut(s)	142
BamHI	GGATCC	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	5 cut(s)	130, 311, 661, 664, 685
BccI	CCATC	2 cut(s)	128, 132
BciT130I	CCWGG	2 cut(s)	279, 752
BclI	TGATCA	1 cut(s)	783
BcoDI	GTCTC	2 cut(s)	15, 53
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	2 cut(s)	116, 537
BfrI	CTTAAG	1 cut(s)	341
BfuAI	ACCTGC	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	102
BglII	AGATCT	2 cut(s)	66, 541
BisI	GCNGC	6 cut(s)	119, 300, 303, 675, 678, 699
BlsI	GCNGC	6 cut(s)	120, 301, 304, 676, 679, 700
Bme1390I	CCNGG	2 cut(s)	279, 752
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	142, 633
BmiI	GGNNCC	3 cut(s)	143, 600, 634
BmrFI	CCNGG	2 cut(s)	279, 752
BmsI	GCATC	3 cut(s)	423, 442, 763
BpiI	GAAGAC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	53
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse1I	ACTGG	1 cut(s)	529
BseBI	CCWGG	2 cut(s)	279, 752
BseGI	GGATG	3 cut(s)	143, 315, 457
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMII	CTCAG	3 cut(s)	210, 570, 777
BseNI	ACTGG	1 cut(s)	529
BseXI	GCAGC	5 cut(s)	130, 311, 661, 664, 685
BshFI	GGCC	2 cut(s)	105, 635
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	2 cut(s)	15, 53
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	105, 635
Bso31I	GGTCTC	1 cut(s)	53
Bsp143I	GATC	7 cut(s)	66, 517, 541, 598, 729, 754, 783
BspACI	CCGC	2 cut(s)	14, 302
BspANI	GGCC	2 cut(s)	105, 635
BspCNI	CTCAG	3 cut(s)	211, 571, 776
BspLI	GGNNCC	3 cut(s)	143, 600, 634
BspMAI	CTGCAG	2 cut(s)	120, 541
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	4 cut(s)	593, 606, 737, 762
BspTI	CTTAAG	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	529
BssMI	GATC	7 cut(s)	66, 517, 541, 598, 729, 754, 783
Bst2UI	CCWGG	2 cut(s)	279, 752
Bst4CI	ACNGT	2 cut(s)	190, 365
Bst6I	CTCTTC	2 cut(s)	457, 523
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	3 cut(s)	219, 579, 763
BstF5I	GGATG	3 cut(s)	143, 315, 457
BstKTI	GATC	7 cut(s)	69, 520, 544, 601, 732, 757, 786
BstMAI	GTCTC	2 cut(s)	15, 53
BstMBI	GATC	7 cut(s)	66, 517, 541, 598, 729, 754, 783
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 489
BstNI	CCWGG	2 cut(s)	279, 752
BstNSI	RCATGY	2 cut(s)	319, 459
BstSCI	CCNGG	2 cut(s)	277, 750
BstSFI	CTRYAG	2 cut(s)	116, 537
BstV1I	GCAGC	5 cut(s)	130, 311, 661, 664, 685
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	3 cut(s)	66, 541, 598
BstYI	RGATCY	3 cut(s)	66, 541, 598
BsuRI	GGCC	2 cut(s)	105, 635
BtsCI	GGATG	3 cut(s)	143, 315, 457
BtsIMutI	CAGTG	2 cut(s)	370, 387
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	770
Cfr13I	GGNCC	2 cut(s)	142, 633
Csp6I	GTAC	2 cut(s)	23, 241
CviAII	CATG	4 cut(s)	125, 199, 316, 456
CviQI	GTAC	2 cut(s)	23, 241
DdeI	CTNAG	3 cut(s)	219, 579, 763
DpnI	GATC	7 cut(s)	68, 519, 543, 600, 731, 756, 785
DpnII	GATC	7 cut(s)	66, 517, 541, 598, 729, 754, 783
Eam1104I	CTCTTC	2 cut(s)	457, 523
EarI	CTCTTC	2 cut(s)	457, 523
Eco31I	GGTCTC	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	277, 750
EcoRV	GATATC	1 cut(s)	76
EcoT22I	ATGCAT	2 cut(s)	457, 778
FaeI	CATG	4 cut(s)	128, 202, 319, 459
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	4 cut(s)	124, 198, 315, 455
FbaI	TGATCA	1 cut(s)	783
Fnu4HI	GCNGC	6 cut(s)	119, 300, 303, 675, 678, 699
FokI	GGATG	3 cut(s)	150, 322, 464
Fsp4HI	GCNGC	6 cut(s)	119, 300, 303, 675, 678, 699
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	6 cut(s)	119, 300, 303, 675, 678, 699
HaeIII	GGCC	2 cut(s)	105, 635
Hin1II	CATG	4 cut(s)	128, 202, 319, 459
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	2 cut(s)	207, 740
HphI	GGTGA	2 cut(s)	238, 365
Hpy188I	TCNGA	3 cut(s)	705, 745, 788
Hpy188III	TCNNGA	1 cut(s)	653
HpyAV	CCTTC	5 cut(s)	89, 217, 247, 442, 545
HpyCH4III	ACNGT	2 cut(s)	190, 365
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	7 cut(s)	118, 414, 455, 492, 539, 680, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 489
HpyF3I	CTNAG	3 cut(s)	219, 579, 763
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	4 cut(s)	128, 202, 319, 459
Ksp22I	TGATCA	1 cut(s)	783
Kzo9I	GATC	7 cut(s)	66, 517, 541, 598, 729, 754, 783
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	9 cut(s)	31, 128, 143, 264, 291, 510, 591, 737, 764
Lsp1109I	GCAGC	5 cut(s)	130, 311, 661, 664, 685
LweI	GCATC	3 cut(s)	423, 442, 763
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	7 cut(s)	68, 519, 543, 600, 731, 756, 785
MboI	GATC	7 cut(s)	66, 517, 541, 598, 729, 754, 783
MboII	GAAGA	7 cut(s)	61, 206, 474, 527, 540, 567, 605
MflI	RGATCY	3 cut(s)	66, 541, 598
MluCI	AATT	4 cut(s)	212, 284, 403, 499
MnlI	CCTC	6 cut(s)	56, 195, 300, 524, 589, 772
Mph1103I	ATGCAT	2 cut(s)	457, 778
MseI	TTAA	3 cut(s)	321, 342, 477
MspA1I	CMGCKG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	279, 752
MvaI	CCWGG	2 cut(s)	279, 752
MwoI	GCNNNNNNNGC	2 cut(s)	102, 489
NdeII	GATC	7 cut(s)	66, 517, 541, 598, 729, 754, 783
NlaIII	CATG	4 cut(s)	128, 202, 319, 459
NlaIV	GGNNCC	3 cut(s)	143, 600, 634
NmuCI	GTSAC	1 cut(s)	365
NsiI	ATGCAT	2 cut(s)	457, 778
NspI	RCATGY	2 cut(s)	319, 459
PcsI	WCGNNNNNNNCGW	2 cut(s)	613, 622
PfeI	GAWTC	2 cut(s)	207, 740
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	6 cut(s)	120, 301, 304, 676, 679, 700
Psp6I	CCWGG	2 cut(s)	277, 750
PspGI	CCWGG	2 cut(s)	277, 750
PspN4I	GGNNCC	3 cut(s)	143, 600, 634
PspPI	GGNCC	2 cut(s)	142, 633
PstI	CTGCAG	2 cut(s)	120, 541
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	3 cut(s)	66, 541, 598
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	2 cut(s)	24, 242
RsaNI	GTAC	2 cut(s)	23, 241
SaqAI	TTAA	3 cut(s)	321, 342, 477
SatI	GCNGC	6 cut(s)	119, 300, 303, 675, 678, 699
Sau3AI	GATC	7 cut(s)	66, 517, 541, 598, 729, 754, 783
Sau96I	GGNCC	2 cut(s)	142, 633
ScrFI	CCNGG	2 cut(s)	279, 752
SfaNI	GCATC	3 cut(s)	423, 442, 763
SfcI	CTRYAG	2 cut(s)	116, 537
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	2 cut(s)	107, 341
SmoI	CTYRAG	2 cut(s)	107, 341
Sse9I	AATT	4 cut(s)	212, 284, 403, 499
SsiI	CCGC	2 cut(s)	14, 302
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	277, 750
TaaI	ACNGT	2 cut(s)	190, 365
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	4 cut(s)	72, 333, 654, 710
TasI	AATT	4 cut(s)	212, 284, 403, 499
TatI	WGTACW	2 cut(s)	22, 240
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	2 cut(s)	207, 740
Tru1I	TTAA	3 cut(s)	321, 342, 477
Tru9I	TTAA	3 cut(s)	321, 342, 477
TscAI	CASTG	2 cut(s)	370, 394
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	5 cut(s)	118, 299, 674, 677, 698
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	4 cut(s)	48, 66, 113, 702
TspGWI	ACGGA	2 cut(s)	134, 614
TspRI	CASTG	2 cut(s)	370, 394
Tth111I	GACNNNGTC	1 cut(s)	7
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	2 cut(s)	319, 459
XspI	CTAG	1 cut(s)	347
Zsp2I	ATGCAT	2 cut(s)	457, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.