FvH4_6g52600

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
38669840 .. 38673667
3828 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52600.t2

Sequence Viewer

Length: 1569 bp
ATGATCAAACAGATACTTAATAGACTCCCAAGGAAGCCCAAGTCAGGTGATCATCGTGAAGGAGGATCGTCCAGCTCTTCTTCAAATGCTTCAACCAGTTCAAGAAGCGGCTCAACGAGTAATAAGTATGCACACTCGGGTACTACGTCAGTTTCAGGCCCCAATTCTACTCCAAATTATGGAGTAAATCATGGAAGCAAGCTTAACTCGGATGTGAATGCAAAGGTTAATGGGAATTCATTGGCTTCGTTTGAGGCACTGCCTAGCTTCAAAGATGTTCCGAATTCAGAGAAGCAGAACTTGTGCATAAAAAAGTTGAACTTATGTTGTTATGTGTTTGACTTCACTGACCCAACGAAAAACCTCAAGGAAAAGGACATCAAGCGACAGACATTGGTAGAGCTTGTGGATTACATTGCTTCTGCTAATGGGAAGTTCTCAGAAAGTGTCATTCAAGAACTTGTAAAGATGGTGTCCATAAACTTATTTAGAACATTCACTTCTCCACCCCATGAGAACAGAGCTTTAGAGGCCTTTGACTTAGAAGAGGATGAGCCCTCAATGGACCCAGCATGGCCGCACTTGCAAGTTGTGTATGAATTGTTCTTGAGGTTTGTGGCATCACCTGAGACAGATGCAAAGTTAGCTAAGAGGTATGTTGATCACTCATTTGTTCTCAAGTTATTAGGTCTTTTTGATTCAGACGACCACAGAGAGAGGGACTACTTGAAAACTGTTCTGCACCGCATCTATGGGAAATTTATGGTGCACCGCCCATTCATCAGGAAAGCAATCAACCACATCTTCTACCATTTTATTTTTGAAACTGAAAAGCATAATGGGATTGCTGAGCTGTTAGAAATTTTGGGAAGTATAATCAACGGATTTGCTCTGCCATTGAAAGAAGAGCACAAACTCTTTCTTGTTCGAGTGCTTATTCCACTCCACAAACCTAAATGTGTATCCTTGTACCATCAGCAGTTATCTTATTGCATTACCCAATTTGTGGAGAAAGACTGCAAACTTGCTGATACAATAATCCGTGGGTTACTAAAATATTGGCCTATTACAAATAGTTCCAAAGAGGTCATGTTCTTAGGTGAGCTGGAAGAAGTTTTAGAAGCTACTCAGCCTGGAGAGTTCCAACGCTGTATGGTACCGTTATTTCGCCAAGTTGGCCGTTGCTTGAGCAGTTCACATTTTCAGGTGGCGGAAAGAGCTCTCTTCTTATGGAATAATGATCACATTTCAAACCTAATCAAACAGAATCGCCATGTTTTACTGCCCATTATATTCCCCTCGTTGGAGAGAAATGCAAGAAATCACTGGAACCAGGCAGTTCAAAGCCTAACATTAAATGTTCGCAAGATATTCTCTGATATTGACCCTGAGCTTTTTGAGGAATGCTTGCTCAAATTCCAGGAAGATGAAGCACAAGAGAAGGAAATGAGTTTGAAACGTGAACTGACTTGGAAACGTTTGGAAGAGATTGCTGCAAAGAAAGCTTCTGCAAGTAACGAAGCGGTGCTTGTGTCCCCAAGAAAAGCCATGGGCAAACCTTCTGGCTAG

Protein Analysis

523

Amino Acids

59.55

Weight (kDa)

8.54

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B56 PF01603 87 - 498 3.1e-191 Protein phosphatase 2A regulatory B subunit (B56 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1156
AccB1I GGYRCC 1 cut(s) 1156
AccB7I CCANNNNNTGG 2 cut(s) 179, 1006
AciI CCGC 6 cut(s) 108, 578, 745, 772, 1211, 1523
AclI AACGTT 1 cut(s) 1477
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 2 cut(s) 575, 1177
AcsI RAATTY 5 cut(s) 235, 283, 758, 861, 1415
AfaI GTAC 3 cut(s) 142, 971, 1158
AfiI CCNNNNNNNGG 4 cut(s) 44, 179, 1006, 1303
AjnI CCWGG 3 cut(s) 1132, 1332, 1419
Alw21I GWGCWC 3 cut(s) 771, 912, 1222
Alw26I GTCTC 1 cut(s) 623
Alw44I GTGCAC 1 cut(s) 767
AlwI GGATC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 5 cut(s) 157, 531, 575, 1061, 1177
ApaLI GTGCAC 1 cut(s) 767
ApeKI GCWGC 1 cut(s) 1493
ApoI RAATTY 5 cut(s) 235, 283, 758, 861, 1415
Asp718I GGTACC 1 cut(s) 1156
AspS9I GGNCC 2 cut(s) 158, 565
AsuHPI GGTGA 3 cut(s) 59, 615, 1112
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 1 cut(s) 565
BaeGI GKGCMC 1 cut(s) 771
BanI GGYRCC 1 cut(s) 1156
BanII GRGCYC 2 cut(s) 558, 1222
Bbv12I GWGCWC 3 cut(s) 771, 912, 1222
BbvI GCAGC 1 cut(s) 1480
BccI CCATC 2 cut(s) 463, 981
BceAI ACGGC 1 cut(s) 1164
BciT130I CCWGG 3 cut(s) 1134, 1334, 1421
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 4 cut(s) 3, 49, 661, 1240
BcoDI GTCTC 1 cut(s) 623
BfaI CTAG 2 cut(s) 264, 1567
BfuI GTATCC 1 cut(s) 973
BglI GCCNNNNNGGC 1 cut(s) 1176
BisI GCNGC 3 cut(s) 109, 578, 1494
BlpI GCTNAGC 1 cut(s) 849
BlsI GCNGC 3 cut(s) 110, 579, 1495
Bme1390I CCNGG 3 cut(s) 1134, 1334, 1421
Bme18I GGWCC 1 cut(s) 565
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 158, 565
BmiI GGNNCC 4 cut(s) 160, 567, 1158, 1331
BmrFI CCNGG 3 cut(s) 1134, 1334, 1421
BmsI GCATC 3 cut(s) 625, 629, 756
BpmI CTGGAG 1 cut(s) 1155
Bpu10I CCTNAGC 1 cut(s) 1389
Bpu1102I GCTNAGC 1 cut(s) 849
BpuEI CTTGAG 4 cut(s) 350, 628, 662, 1207
BsaJI CCNNGG 3 cut(s) 29, 1042, 1548
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 179, 1006, 1303
Bse1I ACTGG 2 cut(s) 96, 1331
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 3 cut(s) 1134, 1334, 1421
BseDI CCNNGG 3 cut(s) 29, 1042, 1548
BseGI GGATG 2 cut(s) 217, 556
BseLI CCNNNNNNNGG 4 cut(s) 44, 179, 1006, 1303
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 5 cut(s) 453, 618, 840, 1142, 1380
BseNI ACTGG 2 cut(s) 96, 1331
BseSI GKGCMC 1 cut(s) 771
BseXI GCAGC 1 cut(s) 1480
BseYI CCCAGC 1 cut(s) 568
BsgI GTGCAG 1 cut(s) 725
BshFI GGCC 5 cut(s) 159, 533, 577, 1063, 1179
BshNI GGYRCC 1 cut(s) 1156
BsiHKAI GWGCWC 3 cut(s) 771, 912, 1222
BsiHKCI CYCGRG 1 cut(s) 136
BslFI GGGAC 2 cut(s) 734, 1519
BslI CCNNNNNNNGG 4 cut(s) 44, 179, 1006, 1303
BsmAI GTCTC 1 cut(s) 623
BsmFI GGGAC 2 cut(s) 734, 1519
BsmI GAATGC 2 cut(s) 223, 1409
BsnI GGCC 5 cut(s) 159, 533, 577, 1063, 1179
BsoBI CYCGRG 1 cut(s) 136
Bsp1286I GDGCHC 4 cut(s) 558, 771, 912, 1222
Bsp143I GATC 5 cut(s) 3, 49, 65, 661, 1240
Bsp1720I GCTNAGC 1 cut(s) 849
Bsp19I CCATGG 1 cut(s) 1548
BspACI CCGC 6 cut(s) 108, 578, 745, 772, 1211, 1523
BspANI GGCC 5 cut(s) 159, 533, 577, 1063, 1179
BspCNI CTCAG 5 cut(s) 452, 619, 841, 1141, 1381
BspLI GGNNCC 4 cut(s) 160, 567, 1158, 1331
BspPI GGATC 1 cut(s) 73
BspQI GCTCTTC 2 cut(s) 82, 900
BspT107I GGYRCC 1 cut(s) 1156
BsrDI GCAATG 1 cut(s) 414
BsrI ACTGG 2 cut(s) 96, 1331
BssECI CCNNGG 3 cut(s) 29, 1042, 1548
BssMI GATC 5 cut(s) 3, 49, 65, 661, 1240
BssT1I CCWWGG 2 cut(s) 29, 1548
Bst2UI CCWGG 3 cut(s) 1134, 1334, 1421
Bst4CI ACNGT 2 cut(s) 736, 1161
Bst6I CTCTTC 5 cut(s) 82, 540, 900, 1229, 1479
BstC8I GCNNGC 2 cut(s) 200, 1409
BstDEI CTNAG 8 cut(s) 439, 541, 627, 648, 849, 1096, 1128, 1389
BstDSI CCRYGG 2 cut(s) 1042, 1548
BstF5I GGATG 2 cut(s) 217, 556
BstKTI GATC 5 cut(s) 6, 52, 68, 664, 1243
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 5 cut(s) 3, 49, 65, 661, 1240
BstMWI GCNNNNNNNGC 6 cut(s) 530, 583, 644, 1176, 1217, 1502
BstNI CCWGG 3 cut(s) 1134, 1334, 1421
BstSCI CCNGG 3 cut(s) 1132, 1332, 1419
BstSLI GKGCMC 1 cut(s) 771
BstV1I GCAGC 1 cut(s) 1480
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 5 cut(s) 159, 533, 577, 1063, 1179
BtgI CCRYGG 2 cut(s) 1042, 1548
BtsCI GGATG 2 cut(s) 217, 556
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 3 cut(s) 257, 345, 1324
Cac8I GCNNGC 2 cut(s) 200, 1409
Cfr13I GGNCC 2 cut(s) 158, 565
Csp6I GTAC 3 cut(s) 141, 970, 1157
CviAII CATG 6 cut(s) 191, 512, 573, 1090, 1274, 1549
CviQI GTAC 3 cut(s) 141, 970, 1157
DdeI CTNAG 8 cut(s) 439, 541, 627, 648, 849, 1096, 1128, 1389
DpnI GATC 5 cut(s) 5, 51, 67, 663, 1242
DpnII GATC 5 cut(s) 3, 49, 65, 661, 1240
EaeI YGGCCR 2 cut(s) 575, 1177
Eam1104I CTCTTC 5 cut(s) 82, 540, 900, 1229, 1479
EarI CTCTTC 5 cut(s) 82, 540, 900, 1229, 1479
EciI GGCGGA 1 cut(s) 1226
Ecl136II GAGCTC 1 cut(s) 1220
Eco130I CCWWGG 2 cut(s) 29, 1548
Eco147I AGGCCT 1 cut(s) 533
Eco24I GRGCYC 2 cut(s) 558, 1222
Eco47I GGWCC 1 cut(s) 565
Eco53kI GAGCTC 1 cut(s) 1220
Eco88I CYCGRG 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 1220
EcoO109I RGGNCCY 1 cut(s) 158
EcoRI GAATTC 2 cut(s) 235, 283
EcoRII CCWGG 3 cut(s) 1132, 1332, 1419
EcoT14I CCWWGG 2 cut(s) 29, 1548
EcoT38I GRGCYC 2 cut(s) 558, 1222
ErhI CCWWGG 2 cut(s) 29, 1548
FaeI CATG 6 cut(s) 194, 515, 576, 1093, 1277, 1552
FalI AAGNNNNNCTT 6 cut(s) 284, 316, 305, 337, 1512, 1544
FaqI GGGAC 2 cut(s) 734, 1519
FatI CATG 6 cut(s) 190, 511, 572, 1089, 1273, 1548
FbaI TGATCA 4 cut(s) 3, 49, 661, 1240
Fnu4HI GCNGC 3 cut(s) 109, 578, 1494
FokI GGATG 2 cut(s) 224, 563
FriOI GRGCYC 2 cut(s) 558, 1222
Fsp4HI GCNGC 3 cut(s) 109, 578, 1494
FspBI CTAG 2 cut(s) 264, 1567
GluI GCNGC 3 cut(s) 109, 578, 1494
GsaI CCCAGC 1 cut(s) 572
GsuI CTGGAG 1 cut(s) 1155
HaeIII GGCC 5 cut(s) 159, 533, 577, 1063, 1179
Hin1II CATG 6 cut(s) 194, 515, 576, 1093, 1277, 1552
HindIII AAGCTT 2 cut(s) 200, 1503
HinfI GANTC 3 cut(s) 24, 698, 1267
HphI GGTGA 3 cut(s) 59, 615, 1112
Hpy166II GTNNAC 3 cut(s) 769, 1196, 1463
Hpy188I TCNGA 6 cut(s) 211, 282, 289, 442, 703, 1378
Hpy188III TCNNGA 5 cut(s) 56, 102, 455, 607, 784
Hpy8I GTNNAC 3 cut(s) 769, 1196, 1463
HpyAV CCTTC 3 cut(s) 53, 1435, 1569
HpyCH4III ACNGT 2 cut(s) 736, 1161
HpyCH4IV ACGT 3 cut(s) 146, 1459, 1477
HpyF10VI GCNNNNNNNGC 6 cut(s) 530, 583, 644, 1176, 1217, 1502
HpyF3I CTNAG 8 cut(s) 439, 541, 627, 648, 849, 1096, 1128, 1389
HpySE526I ACGT 3 cut(s) 146, 1459, 1477
Hsp92II CATG 6 cut(s) 194, 515, 576, 1093, 1277, 1552
KpnI GGTACC 1 cut(s) 1160
Ksp22I TGATCA 4 cut(s) 3, 49, 661, 1240
Kzo9I GATC 5 cut(s) 3, 49, 65, 661, 1240
LguI GCTCTTC 2 cut(s) 82, 900
Lsp1109I GCAGC 1 cut(s) 1480
LweI GCATC 3 cut(s) 625, 629, 756
MaeI CTAG 2 cut(s) 264, 1567
MaeII ACGT 3 cut(s) 146, 1459, 1477
MaeIII GTNAC 2 cut(s) 1047, 1514
MalI GATC 5 cut(s) 5, 51, 67, 663, 1242
MboI GATC 5 cut(s) 3, 49, 65, 661, 1240
MboII GAAGA 9 cut(s) 69, 72, 557, 796, 917, 1121, 1216, 1436, 1496
MhlI GDGCHC 4 cut(s) 558, 771, 912, 1222
MluCI AATT 9 cut(s) 163, 175, 235, 283, 599, 758, 861, 1001, 1415
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 1168, 1284
MseI TTAA 4 cut(s) 18, 204, 228, 1355
MspR9I CCNGG 3 cut(s) 1134, 1334, 1421
Mva1269I GAATGC 2 cut(s) 223, 1409
MvaI CCWGG 3 cut(s) 1134, 1334, 1421
MwoI GCNNNNNNNGC 6 cut(s) 530, 583, 644, 1176, 1217, 1502
NcoI CCATGG 1 cut(s) 1548
NdeII GATC 5 cut(s) 3, 49, 65, 661, 1240
NlaIII CATG 6 cut(s) 194, 515, 576, 1093, 1277, 1552
NlaIV GGNNCC 4 cut(s) 160, 567, 1158, 1331
PceI AGGCCT 1 cut(s) 533
PciSI GCTCTTC 2 cut(s) 82, 900
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PctI GAATGC 2 cut(s) 223, 1409
PfeI GAWTC 2 cut(s) 698, 1267
PflMI CCANNNNNTGG 2 cut(s) 179, 1006
PfoI TCCNGGA 1 cut(s) 1419
PkrI GCNGC 3 cut(s) 110, 579, 1495
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 1222
Psp1406I AACGTT 1 cut(s) 1477
Psp6I CCWGG 3 cut(s) 1132, 1332, 1419
PspFI CCCAGC 1 cut(s) 568
PspGI CCWGG 3 cut(s) 1132, 1332, 1419
PspN4I GGNNCC 4 cut(s) 160, 567, 1158, 1331
PspPI GGNCC 2 cut(s) 158, 565
PsrI GAACNNNNNNTAC 2 cut(s) 587, 619
RsaI GTAC 3 cut(s) 142, 971, 1158
RsaNI GTAC 3 cut(s) 141, 970, 1157
SacI GAGCTC 1 cut(s) 1222
SapI GCTCTTC 2 cut(s) 82, 900
SaqAI TTAA 4 cut(s) 18, 204, 228, 1355
SatI GCNGC 3 cut(s) 109, 578, 1494
Sau3AI GATC 5 cut(s) 3, 49, 65, 661, 1240
Sau96I GGNCC 2 cut(s) 158, 565
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 3 cut(s) 1134, 1334, 1421
SduI GDGCHC 4 cut(s) 558, 771, 912, 1222
SfaNI GCATC 3 cut(s) 625, 629, 756
SinI GGWCC 1 cut(s) 565
SmlI CTYRAG 4 cut(s) 365, 607, 677, 1186
SmoI CTYRAG 4 cut(s) 365, 607, 677, 1186
Sse9I AATT 9 cut(s) 163, 175, 235, 283, 599, 758, 861, 1001, 1415
SseBI AGGCCT 1 cut(s) 533
SsiI CCGC 6 cut(s) 108, 578, 745, 772, 1211, 1523
SspI AATATT 1 cut(s) 1058
SspMI CTAG 2 cut(s) 264, 1567
SstI GAGCTC 1 cut(s) 1222
StuI AGGCCT 1 cut(s) 533
StyD4I CCNGG 3 cut(s) 1132, 1332, 1419
StyI CCWWGG 2 cut(s) 29, 1548
TaaI ACNGT 2 cut(s) 736, 1161
TaiI ACGT 3 cut(s) 149, 1462, 1480
TaqI TCGA 1 cut(s) 928
TasI AATT 9 cut(s) 163, 175, 235, 283, 599, 758, 861, 1001, 1415
TauI GCSGC 2 cut(s) 111, 580
TfiI GAWTC 2 cut(s) 698, 1267
Tru1I TTAA 4 cut(s) 18, 204, 228, 1355
Tru9I TTAA 4 cut(s) 18, 204, 228, 1355
TscAI CASTG 3 cut(s) 264, 352, 1331
TseI GCWGC 1 cut(s) 1493
TspDTI ATGAA 4 cut(s) 228, 612, 769, 1443
TspGWI ACGGA 2 cut(s) 897, 1031
TspRI CASTG 3 cut(s) 264, 352, 1331
Van91I CCANNNNNTGG 2 cut(s) 179, 1006
VneI GTGCAC 1 cut(s) 767
VpaK11BI GGWCC 1 cut(s) 565
XapI RAATTY 5 cut(s) 235, 283, 758, 861, 1415
XspI CTAG 2 cut(s) 264, 1567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.