Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001125

Physical Location & Seq

Genomic Coordinates Forward (+)

8016637 .. 8028603

Gene Structure 11967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1110300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

ATGTTGAGACAGATACTTAATAAGCTTCCCCGGAAGTCTTCTTCTAAGAAAGCTGAGAATCGTGATACATTGTATTCGAATGCTCCCACCAATTCAAGAAGCAGTGATTTGGGGACCAGTAAGTCTGGGAATTTGACTACATCTTTCCCACCAGGAAATTCTGTTCCAGACACGGTGAAAAGTTACAGCAACAAGAATGTGAGGGGTGCAAATTTGAAGCCGAATGGTTTCGTGCTCTCTTCTTCTTATGAAGCATTGCCTGGATTTAGAGATGTTCCAAATGCGGAGAAGCAAAGCTTATTTATTAAAAAGGTGAGTTTGTGCTGCGTTGTATTTGACTTTACCGACCCAACAAAGCACCTGAAAGAAAAGGAGATCAAGCGGCAGACACTATTAGAGCTAGTGGATTATGTGACTAAAGCAAACGGTAAATTTTCAGAAGCTCTTATGCAAGAGCTTGTAAAAATGGTGTCTGCAAATTTGTTTAGGGTGTTTACCCCACAGCCTCGTGAGAATAAAGTTGCAGATGGCTTTGATTTGGAAGAGGAAGAACCTTCAATGGATCCTGCATGGCCTCATTTGCAAGTAGTGTACGAGTTATTGTTAAGGTTTGTCGCATCACCTGAGACAGATGCAAAATTAGCTAAACGATATATTGATCACTCGTTCATTCTCAAGTTGCTGGATCTTTTTGACTCTGAAGATCCTAGAGAAAGAGAGTATTTGAAAACAATACTGCACCGAGTTTATGGAAAATTTATGGTGCATCGCCCATTCATTAGGAAGGCCATCAACAACATCTTTTATCGTTTCATCTTTGAGACTGAGAAGCATAATGGGATTTCTGAACTCCTAGAAATTTTGGGCAGTATTATAAATGGATTTGCTCTACCACTGAAAGAAGAGCATAAATTGTTCCTCGTTCGGGCTCTAATTCCCCTGCATAAGCCAAAATGTTTAGCTATGTACCATCAACAGTTATCTTACTGCATTACGCAGTTTGTAGAGAAAGATTGCAAGCTTGCTGATACTGTCATTAGGGGTTTACTGAAGTACTGGCCGATCACTAATAGTTCAAAGGAAGTATTGTTCCTAAGTGAGTTGGAAGAAGTGTTGGAAGCAACTCAGCCATCTGAATTCCAGCGGTGCATGGTTCCCCTCTTTCGCCAGATTGCTAATTGTTTGAACAGTTCTCACTTTCAGGTGGCAGAGAGAGCTTTATTTTTGTGGAACAACGATCACATTGAGAACTTAATCAGACAGAATCGTAAAGTTATACTGCCTATTATCTTACCTGCATTGGAGAAAAATGCTAGAAATCACTGGAATCAGGCTGTCCATAGCTTGACCCTAAATGTCCGAAAAATTTTCAACGAGCTTGATCCTGAGCTTTTCAAGGAGTGCTTACTCCAGGTTCAGGAAGACGAGTCAAAGGAGGGCGAGGTTGCCGCACGGCGTGAATCCACTTGGAAACGCTTGGAAGAAGTTGCTGCAAAGAAAGCTGCGAGCAACGAACCTGTGCTTGTTTTCGGCAAAGCACCTCCCAGCACTACCTCGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005829 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0010565 GO:0010646 GO:0010648 GO:0019216 GO:0019217 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0031998 GO:0032000 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050994 GO:0050996 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0080090 GO:1900457 GO:1900458

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

521

Amino Acids

59.69

Weight (kDa)

8.77

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B56	PF01603	86 - 496	2.5e-192	Protein phosphatase 2A regulatory B subunit (B56 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13460 AT1G13460 AT3G26020 AT3G26020 AT3G26020 AT3G26020
fragaria_vesca	FvH4_4g24551 FvH4_4g24551 FvH4_4g24551 FvH4_4g24560 FvH4_4g24560 FvH4_6g52600 FvH4_6g52600 FvH4_6g52600 FvH4_6g52600
malus_domestica	MD09G1017500.v1.1 MD13G1110300.v1.1 MD13G1110400.v1.1 MD16G1110300.v1.1 MD16G1110400.v1.1 MD17G1018300.v1.1
prunus_persica	Prupe.1G234200_v2.0.a1 Prupe.1G234200_v2.0.a1 Prupe.1G234200_v2.0.a1 Prupe.1G234200_v2.0.a1 Prupe.1G234400_v2.0.a1 Prupe.1G234400_v2.0.a1 Prupe.1G234400_v2.0.a1 Prupe.3G299400_v2.0.a1 Prupe.3G299400_v2.0.a1
pyrus_communis	pycom111g01440 pycom13g09600 pycom13g09610 pycom16g09370 pycom16g09380
rosa_chinensis	RchiOBHm_Chr2g0174161 RchiOBHm_Chr4g0431471 RchiOBHm_Chr4g0431481
rosa_laevigata	RLG00000006911 RLG00000022252
rosa_multiflora	Rmu_sc0007885.1_g000009 Rmu_sc0007885.1_g000011 Rmu_ssc0000198.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078400 Rroxscaffold_5G00372930
rosa_rugosa	Rorug02G0575500
rosa_samantha	Rh2AG654900 Rh2BG666100 Rh2CG630300 Rh2DG680700 Rh4AG306600 Rh4BG314600 Rh4BG314700 Rh4CG330000 Rh4DG309800
rosa_wichuraiana	Rw2G053750 Rw4G026610 Rw4G026620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	875
AasI	GACNNNNNNGTC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	1303
AciI	CCGC	4 cut(s)	284, 382, 1144, 1449
AclWI	GGATC	5 cut(s)	557, 570, 693, 698, 1376
AcoI	YGGCCR	1 cut(s)	1058
AcsI	RAATTY	9 cut(s)	130, 157, 211, 431, 478, 755, 858, 1136, 1365
AcuI	CTGAAG	2 cut(s)	720, 1070
AdeI	CACNNNGTG	1 cut(s)	1457
AfaI	GTAC	3 cut(s)	593, 968, 1055
AfiI	CCNNNNNNNGG	2 cut(s)	925, 1417
AgsI	TTSAA	8 cut(s)	96, 217, 558, 727, 1077, 1186, 1372, 1396
AjnI	CCWGG	3 cut(s)	151, 259, 1410
AloI	GAACNNNNNNTCC	4 cut(s)	147, 179, 1073, 1105
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	620, 815
AlwI	GGATC	5 cut(s)	557, 570, 693, 698, 1376
AoxI	GGCC	3 cut(s)	572, 786, 1058
ApeKI	GCWGC	3 cut(s)	324, 1490, 1502
ApoI	RAATTY	9 cut(s)	130, 157, 211, 431, 478, 755, 858, 1136, 1365
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	187, 325, 612
AsuII	TTCGAA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	114
BamHI	GGATCC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	931
BauI	CACGAG	1 cut(s)	507
BbsI	GAAGAC	2 cut(s)	30, 1428
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	311, 1477, 1489
BccI	CCATC	4 cut(s)	521, 797, 978, 1138
BceAI	ACGGC	1 cut(s)	1469
BciT130I	CCWGG	3 cut(s)	153, 261, 1412
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	620, 815
BfaI	CTAG	4 cut(s)	401, 708, 854, 1314
BfuAI	ACCTGC	1 cut(s)	1303
BisI	GCNGC	5 cut(s)	325, 383, 1449, 1491, 1503
BlsI	GCNGC	5 cut(s)	326, 384, 1450, 1492, 1504
BmcAI	AGTACT	1 cut(s)	1055
Bme1390I	CCNGG	4 cut(s)	31, 153, 261, 1412
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	3 cut(s)	115, 564, 1155
BmrFI	CCNGG	4 cut(s)	31, 153, 261, 1412
BmsI	GCATC	3 cut(s)	622, 626, 775
BpiI	GAAGAC	2 cut(s)	30, 1428
BpmI	CTGGAG	1 cut(s)	1394
Bpu10I	CCTNAGC	1 cut(s)	1386
Bpu14I	TTCGAA	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	925, 1417
Bse1I	ACTGG	3 cut(s)	117, 1061, 1328
Bse3DI	GCAATG	1 cut(s)	254
BseBI	CCWGG	3 cut(s)	153, 261, 1412
BseDI	CCNNGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	925, 1417
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	5 cut(s)	45, 615, 816, 1139, 1377
BseNI	ACTGG	3 cut(s)	117, 1061, 1328
BseXI	GCAGC	3 cut(s)	311, 1477, 1489
BseYI	CCCAGC	1 cut(s)	1544
BsgI	GTGCAG	1 cut(s)	722
BshFI	GGCC	3 cut(s)	574, 788, 1060
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	925, 1417
BsmAI	GTCTC	2 cut(s)	620, 815
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	574, 788, 1060
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	237, 931
Bsp143I	GATC	8 cut(s)	375, 562, 658, 685, 703, 1062, 1237, 1381
BspACI	CCGC	4 cut(s)	284, 382, 1144, 1449
BspANI	GGCC	3 cut(s)	574, 788, 1060
BspCNI	CTCAG	5 cut(s)	46, 616, 817, 1138, 1378
BspLI	GGNNCC	3 cut(s)	115, 564, 1155
BspMI	ACCTGC	1 cut(s)	1303
BspPI	GGATC	5 cut(s)	557, 570, 693, 698, 1376
BspQI	GCTCTTC	1 cut(s)	897
BspT104I	TTCGAA	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	254
BsrI	ACTGG	3 cut(s)	117, 1061, 1328
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	8 cut(s)	375, 562, 658, 685, 703, 1062, 1237, 1381
BssSI	CACGAG	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	507
Bst2UI	CCWGG	3 cut(s)	153, 261, 1412
Bst4CI	ACNGT	5 cut(s)	175, 428, 978, 1033, 1190
Bst6I	CTCTTC	3 cut(s)	244, 537, 897
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	1019, 1023, 1507
BstDEI	CTNAG	7 cut(s)	45, 54, 624, 825, 1094, 1125, 1386
BstKTI	GATC	8 cut(s)	378, 565, 661, 688, 706, 1065, 1240, 1384
BstMAI	GTCTC	2 cut(s)	620, 815
BstMBI	GATC	8 cut(s)	375, 562, 658, 685, 703, 1062, 1237, 1381
BstMWI	GCNNNNNNNGC	4 cut(s)	580, 641, 1214, 1499
BstNI	CCWGG	3 cut(s)	153, 261, 1412
BstSCI	CCNGG	4 cut(s)	29, 151, 259, 1410
BstV1I	GCAGC	3 cut(s)	311, 1477, 1489
BstV2I	GAAGAC	2 cut(s)	30, 1428
BstX2I	RGATCY	3 cut(s)	562, 685, 703
BstYI	RGATCY	3 cut(s)	562, 685, 703
BsuRI	GGCC	3 cut(s)	574, 788, 1060
BtgZI	GCGATG	1 cut(s)	752
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	3 cut(s)	109, 893, 1321
BveI	ACCTGC	1 cut(s)	1303
Cac8I	GCNNGC	3 cut(s)	1019, 1023, 1507
Cfr13I	GGNCC	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	592, 967, 1054
CviAII	CATG	2 cut(s)	570, 1150
CviQI	GTAC	3 cut(s)	592, 967, 1054
DdeI	CTNAG	7 cut(s)	45, 54, 624, 825, 1094, 1125, 1386
DpnI	GATC	8 cut(s)	377, 564, 660, 687, 705, 1064, 1239, 1383
DpnII	GATC	8 cut(s)	375, 562, 658, 685, 703, 1062, 1237, 1381
DraIII	CACNNNGTG	1 cut(s)	1457
DrdI	GACNNNNNNGTC	1 cut(s)	121
DseDI	GACNNNNNNGTC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	1058
Eam1104I	CTCTTC	3 cut(s)	244, 537, 897
EarI	CTCTTC	3 cut(s)	244, 537, 897
Eco24I	GRGCYC	1 cut(s)	931
Eco47I	GGWCC	1 cut(s)	114
Eco57I	CTGAAG	2 cut(s)	720, 1070
EcoRI	GAATTC	1 cut(s)	1136
EcoRII	CCWGG	3 cut(s)	151, 259, 1410
EcoT38I	GRGCYC	1 cut(s)	931
FaeI	CATG	2 cut(s)	573, 1153
FalI	AAGNNNNNCTT	4 cut(s)	281, 313, 1388, 1420
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	2 cut(s)	569, 1149
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	5 cut(s)	325, 383, 1449, 1491, 1503
FriOI	GRGCYC	1 cut(s)	931
Fsp4HI	GCNGC	5 cut(s)	325, 383, 1449, 1491, 1503
FspBI	CTAG	4 cut(s)	401, 708, 854, 1314
GluI	GCNGC	5 cut(s)	325, 383, 1449, 1491, 1503
GsaI	CCCAGC	1 cut(s)	1548
GsuI	CTGGAG	1 cut(s)	1394
HaeIII	GGCC	3 cut(s)	574, 788, 1060
HapII	CCGG	1 cut(s)	31
Hin1II	CATG	2 cut(s)	573, 1153
HindIII	AAGCTT	3 cut(s)	23, 295, 1019
HinfI	GANTC	6 cut(s)	58, 695, 1264, 1327, 1427, 1460
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	3 cut(s)	187, 325, 612
Hpy166II	GTNNAC	3 cut(s)	495, 592, 1046
Hpy188I	TCNGA	6 cut(s)	439, 700, 847, 1135, 1259, 1361
Hpy188III	TCNNGA	6 cut(s)	62, 96, 167, 509, 1385, 1418
Hpy8I	GTNNAC	3 cut(s)	495, 592, 1046
HpyAV	CCTTC	2 cut(s)	564, 778
HpyCH4III	ACNGT	5 cut(s)	175, 428, 978, 1033, 1190
HpyF10VI	GCNNNNNNNGC	4 cut(s)	580, 641, 1214, 1499
HpyF3I	CTNAG	7 cut(s)	45, 54, 624, 825, 1094, 1125, 1386
Hsp92II	CATG	2 cut(s)	573, 1153
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	8 cut(s)	375, 562, 658, 685, 703, 1062, 1237, 1381
LguI	GCTCTTC	1 cut(s)	897
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	3 cut(s)	311, 1477, 1489
LweI	GCATC	3 cut(s)	622, 626, 775
MaeI	CTAG	4 cut(s)	401, 708, 854, 1314
MaeIII	GTNAC	2 cut(s)	182, 412
MalI	GATC	8 cut(s)	377, 564, 660, 687, 705, 1064, 1239, 1383
MboI	GATC	8 cut(s)	375, 562, 658, 685, 703, 1062, 1237, 1381
MflI	RGATCY	3 cut(s)	562, 685, 703
MhlI	GDGCHC	2 cut(s)	237, 931
MlyI	GAGTC	2 cut(s)	689, 1436
MmeI	TCCRAC	2 cut(s)	1083, 1095
MnlI	CCTC	9 cut(s)	195, 516, 538, 585, 929, 1169, 1429, 1435, 1551
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	4 cut(s)	18, 306, 605, 1253
MspA1I	CMGCKG	1 cut(s)	1144
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	4 cut(s)	31, 153, 261, 1412
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	3 cut(s)	153, 261, 1412
MwoI	GCNNNNNNNGC	4 cut(s)	580, 641, 1214, 1499
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	8 cut(s)	375, 562, 658, 685, 703, 1062, 1237, 1381
NlaIII	CATG	2 cut(s)	573, 1153
NlaIV	GGNNCC	3 cut(s)	115, 564, 1155
NmuCI	GTSAC	1 cut(s)	412
NspV	TTCGAA	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	897
PctI	GAATGC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	4 cut(s)	58, 1264, 1327, 1460
PkrI	GCNGC	5 cut(s)	326, 384, 1450, 1492, 1504
PleI	GAGTC	2 cut(s)	689, 1435
PpsI	GAGTC	2 cut(s)	689, 1435
PsiI	TTATAA	1 cut(s)	875
Psp6I	CCWGG	3 cut(s)	151, 259, 1410
PspFI	CCCAGC	1 cut(s)	1544
PspGI	CCWGG	3 cut(s)	151, 259, 1410
PspN4I	GGNNCC	3 cut(s)	115, 564, 1155
PspPI	GGNCC	1 cut(s)	114
PsuI	RGATCY	3 cut(s)	562, 685, 703
RsaI	GTAC	3 cut(s)	593, 968, 1055
RsaNI	GTAC	3 cut(s)	592, 967, 1054
SapI	GCTCTTC	1 cut(s)	897
SaqAI	TTAA	4 cut(s)	18, 306, 605, 1253
SatI	GCNGC	5 cut(s)	325, 383, 1449, 1491, 1503
Sau3AI	GATC	8 cut(s)	375, 562, 658, 685, 703, 1062, 1237, 1381
Sau96I	GGNCC	1 cut(s)	114
ScaI	AGTACT	1 cut(s)	1055
SchI	GAGTC	2 cut(s)	689, 1436
ScrFI	CCNGG	4 cut(s)	31, 153, 261, 1412
SduI	GDGCHC	2 cut(s)	237, 931
SfaNI	GCATC	3 cut(s)	622, 626, 775
SfuI	TTCGAA	1 cut(s)	77
SinI	GGWCC	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
SsiI	CCGC	4 cut(s)	284, 382, 1144, 1449
SspMI	CTAG	4 cut(s)	401, 708, 854, 1314
StyD4I	CCNGG	4 cut(s)	29, 151, 259, 1410
TaaI	ACNGT	5 cut(s)	175, 428, 978, 1033, 1190
TaqI	TCGA	1 cut(s)	77
TatI	WGTACW	1 cut(s)	1053
TauI	GCSGC	2 cut(s)	385, 1451
TfiI	GAWTC	4 cut(s)	58, 1264, 1327, 1460
Tru1I	TTAA	4 cut(s)	18, 306, 605, 1253
Tru9I	TTAA	4 cut(s)	18, 306, 605, 1253
TscAI	CASTG	3 cut(s)	109, 900, 1328
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	3 cut(s)	324, 1490, 1502
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	4 cut(s)	264, 658, 766, 802
TspRI	CASTG	3 cut(s)	109, 900, 1328
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	9 cut(s)	130, 157, 211, 431, 478, 755, 858, 1136, 1365
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	4 cut(s)	401, 708, 854, 1314
ZrmI	AGTACT	1 cut(s)	1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.