Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001125

Physical Location & Seq

Genomic Coordinates Reverse (-)

24830798 .. 24837045

Gene Structure 6248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G234200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

ATGATCAAGCAAATACTTGGTAAGCTTCCACGGAAGCCATCTAAGTCAGCTGAGAATCGTGAGTTTGGGGGTTCATCTGCCTCTTCATTAAGTTCAAGAAGCAGTGATGTAGTAAGTAATAGGCCAATTAACTCAAACAGCGTACCTCTGTTGGGTCTTGATTCTGCTTCAAATTTAGGATATAGCCATGGAAGTAACCTCCCTCAACTTGTAAATTCAAATCTAAATGGAAGTTCTGCTACTGCTTCTTATCAAGCGTTGCCAGCATTTAGGGATGTACCAAGCTCTGAGAAGCAGAACTTGTTTATGAAAAAGCTGAACTTGTGTTGCGTACTGTTTGACTTCACTGACCCAACAAAACATCTGAGAGAAAAAGACATCAAGCGGCAGACGTTGCTAGAGCTGGTAGATTATGTTACTTCTGCAAATGGAAAATTTACTGAAACTGTCGTGCAAGAGGTTATAAAGGTGGTAACTGTGAATTTGTTCAGGTCGTTCTCTCCGCAGCCCCGTGAGAACAAGGTTTTGGAAGCATTTGATTTGGAGGAGGAGGAGCCCTTGATGGACCCTGCATGGTCACACTTACAGATTGTGTATGAATTTTTTCTGAGGTTTGTTGCATCGCCCGAGACAGATGCAAAGTTGGCTAAGAGGTACATTGACCAGTCTTTTGTACTCAAAGTATTGGATCTCTTTGATTCTGAGGATCCTAGGGAAAGGGAGTATTTGAAAACAATTCTGCATCGCATCTATGGAAAGTTTATGGTGCATCGCCCATTCATTAGGAAGGCAATCAACAATATATTTTTCCGATTTATTTTTGAAACAGAAAAGCATAATGGGATTGCTGAGCTTTTAGAGGTTTTGGGCAGTATAATCAATGGATTTGCTCTTCCACTTAAAGAAGAACACAAACTCTTCCTTGTTCAGGTTCTGATCCCCCTTCACAAACCAAAGTGCTTACAAATGTACCATCAGCAGTTGTCCTACTGCATTTCACAGTTTGTGGAGAAAGATTGCAAGCTTGCAGATACTATTATAAGAGGCTTATTAAAGTACTGGCCAATCACAAATAGTTCAAAGGAAGTCATGTTCCTAAGTGAGCTGGAGGAAATTTTAGAAGCAACTCAGCCAGCAGAGTTTCAAAGATGTATGGTACCCCTCTTCCGCCAACTATCTCGTTGCTTGAGCAGTTCACACTTTCAGGTGGCAGAGAGGGCGTTGTACTTATGGAACAATGATCACATTGAGAACTTAATCAGACAAAACCGTAAAGTCATAGTACCCATCATCTTTCCAGCTTTGGAGAAGAATGGTCGCTACCACTGGAACCAAGTGGCTCGGAGCTTGACATTAAATGTCCGTAAAATTTACTCTGATGTTGATCCTGAGCTATTTGAGGAGTGTTTGCTCAAATTTCAGGAAGATGAAGCAAATATGGAGGAGATTAAAACAAAACATGAAACCACGTGGAAGCGCTTAGAAGAGAGTGCTGCTTCTAATGCTGTTAGCAGTGGAGCAGTTGTTCGCCGCTTGAACCCAATTGAAACATCTTCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

521

Amino Acids

59.79

Weight (kDa)

7.21

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13460 AT1G13460 AT3G26020 AT3G26020 AT3G26020 AT3G26020
fragaria_vesca	FvH4_4g24551 FvH4_4g24551 FvH4_4g24551 FvH4_4g24560 FvH4_4g24560 FvH4_6g52600 FvH4_6g52600 FvH4_6g52600 FvH4_6g52600
malus_domestica	MD09G1017500.v1.1 MD13G1110300.v1.1 MD13G1110400.v1.1 MD16G1110300.v1.1 MD16G1110400.v1.1 MD17G1018300.v1.1
prunus_persica	Prupe.1G234200_v2.0.a1 Prupe.1G234200_v2.0.a1 Prupe.1G234200_v2.0.a1 Prupe.1G234200_v2.0.a1 Prupe.1G234400_v2.0.a1 Prupe.1G234400_v2.0.a1 Prupe.1G234400_v2.0.a1 Prupe.3G299400_v2.0.a1 Prupe.3G299400_v2.0.a1
pyrus_communis	pycom111g01440 pycom13g09600 pycom13g09610 pycom16g09370 pycom16g09380
rosa_chinensis	RchiOBHm_Chr2g0174161 RchiOBHm_Chr4g0431471 RchiOBHm_Chr4g0431481
rosa_laevigata	RLG00000006911 RLG00000022252
rosa_multiflora	Rmu_sc0007885.1_g000009 Rmu_sc0007885.1_g000011 Rmu_ssc0000198.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078400 Rroxscaffold_5G00372930
rosa_rugosa	Rorug02G0575500
rosa_samantha	Rh2AG654900 Rh2BG666100 Rh2CG630300 Rh2DG680700 Rh4AG306600 Rh4BG314600 Rh4BG314700 Rh4CG330000 Rh4DG309800
rosa_wichuraiana	Rw2G053750 Rw4G026610 Rw4G026620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	464, 1040
Acc65I	GGTACC	1 cut(s)	1156
AccB1I	GGYRCC	1 cut(s)	1156
AciI	CCGC	4 cut(s)	385, 503, 1168, 1531
AclWI	GGATC	5 cut(s)	696, 701, 714, 931, 1379
AcoI	YGGCCR	1 cut(s)	1061
AcsI	RAATTY	8 cut(s)	172, 214, 434, 481, 599, 1113, 1368, 1415
AcvI	CACGTG	1 cut(s)	1470
AfeI	AGCGCT	1 cut(s)	1478
AfiI	CCNNNNNNNGG	2 cut(s)	152, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AloI	GAACNNNNNNTCC	4 cut(s)	1076, 1108, 1509, 1541
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	5 cut(s)	696, 701, 714, 931, 1379
AlwNI	CAGNNNCTG	1 cut(s)	934
Ama87I	CYCGRG	1 cut(s)	626
Aor51HI	AGCGCT	1 cut(s)	1478
AoxI	GGCC	2 cut(s)	122, 1061
ApeKI	GCWGC	2 cut(s)	505, 1493
ApoI	RAATTY	8 cut(s)	172, 214, 434, 481, 599, 1113, 1368, 1415
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
Asp700I	GAANNNNTTC	2 cut(s)	485, 603
Asp718I	GGTACC	1 cut(s)	1156
AspA2I	CCTAGG	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	1479
AspS9I	GGNCC	1 cut(s)	565
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	565
AvrII	CCTAGG	1 cut(s)	710
BaeI	ACNNNNGTAYC	2 cut(s)	953, 986
BalI	TGGCCA	1 cut(s)	1063
BamHI	GGATCC	1 cut(s)	706
BanI	GGYRCC	1 cut(s)	1156
BanII	GRGCYC	1 cut(s)	558
BarI	GAAGNNNNNNTAC	2 cut(s)	223, 255
BbrPI	CACGTG	1 cut(s)	1470
BbvI	GCAGC	2 cut(s)	517, 1480
BccI	CCATC	4 cut(s)	46, 556, 981, 1295
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BclI	TGATCA	2 cut(s)	3, 1240
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	2 cut(s)	398, 711
BfoI	RGCGCY	1 cut(s)	1480
BisI	GCNGC	4 cut(s)	386, 506, 1494, 1531
BlnI	CCTAGG	1 cut(s)	710
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	4 cut(s)	387, 507, 1495, 1532
BmcAI	AGTACT	1 cut(s)	1058
Bme18I	GGWCC	1 cut(s)	565
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	5 cut(s)	555, 567, 708, 1158, 1331
BmsI	GCATC	5 cut(s)	625, 629, 751, 756, 778
BpmI	CTGGAG	1 cut(s)	1127
Bpu10I	CCTNAGC	1 cut(s)	1389
Bpu1102I	GCTNAGC	1 cut(s)	849
BpuEI	CTTGAG	1 cut(s)	1207
BsaAI	YACGTR	1 cut(s)	1470
BsaBI	GATNNNNATC	1 cut(s)	1383
BsaJI	CCNNGG	3 cut(s)	29, 187, 710
BsaXI	ACNNNNNCTCC	2 cut(s)	1509, 1539
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 928
Bse1I	ACTGG	3 cut(s)	664, 1064, 1331
Bse8I	GATNNNNATC	1 cut(s)	1383
BseDI	CCNNGG	3 cut(s)	29, 187, 710
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	1383
BseLI	CCNNNNNNNGG	2 cut(s)	152, 928
BseMII	CTCAG	8 cut(s)	42, 279, 356, 599, 693, 840, 1142, 1380
BseNI	ACTGG	3 cut(s)	664, 1064, 1331
BseRI	GAGGAG	5 cut(s)	560, 563, 566, 1415, 1457
BseXI	GCAGC	2 cut(s)	517, 1480
BshFI	GGCC	2 cut(s)	124, 1063
BshNI	GGYRCC	1 cut(s)	1156
BsiHKCI	CYCGRG	1 cut(s)	626
BslI	CCNNNNNNNGG	2 cut(s)	152, 928
BsmAI	GTCTC	1 cut(s)	623
BsnI	GGCC	2 cut(s)	124, 1063
BsoBI	CYCGRG	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	6 cut(s)	3, 688, 706, 936, 1240, 1384
Bsp1720I	GCTNAGC	1 cut(s)	849
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	4 cut(s)	385, 503, 1168, 1531
BspANI	GGCC	2 cut(s)	124, 1063
BspCNI	CTCAG	8 cut(s)	43, 280, 357, 600, 694, 841, 1141, 1381
BspLI	GGNNCC	5 cut(s)	555, 567, 708, 1158, 1331
BspPI	GGATC	5 cut(s)	696, 701, 714, 931, 1379
BspQI	GCTCTTC	1 cut(s)	897
BspT107I	GGYRCC	1 cut(s)	1156
BsrI	ACTGG	3 cut(s)	664, 1064, 1331
BssECI	CCNNGG	3 cut(s)	29, 187, 710
BssMI	GATC	6 cut(s)	3, 688, 706, 936, 1240, 1384
BssT1I	CCWWGG	2 cut(s)	187, 710
Bst4CI	ACNGT	5 cut(s)	336, 448, 478, 1002, 1271
Bst6I	CTCTTC	5 cut(s)	88, 897, 923, 1169, 1479
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstBAI	YACGTR	1 cut(s)	1470
BstC8I	GCNNGC	4 cut(s)	264, 1022, 1026, 1134
BstDSI	CCRYGG	2 cut(s)	29, 187
BstENI	CCTNNNNNAGG	1 cut(s)	926
BstF5I	GGATG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	1480
BstHHI	GCGC	1 cut(s)	1479
BstKTI	GATC	6 cut(s)	6, 691, 709, 939, 1243, 1387
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	6 cut(s)	3, 688, 706, 936, 1240, 1384
BstMWI	GCNNNNNNNGC	5 cut(s)	263, 394, 644, 1217, 1502
BstV1I	GCAGC	2 cut(s)	517, 1480
BstX2I	RGATCY	2 cut(s)	688, 706
BstYI	RGATCY	2 cut(s)	688, 706
BsuRI	GGCC	2 cut(s)	124, 1063
BtgI	CCRYGG	2 cut(s)	29, 187
BtgZI	GCGATG	3 cut(s)	606, 728, 755
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	2 cut(s)	109, 1519
BtsIMutI	CAGTG	4 cut(s)	109, 345, 1324, 1519
Cac8I	GCNNGC	4 cut(s)	264, 1022, 1026, 1134
CaiI	CAGNNNCTG	1 cut(s)	934
CfoI	GCGC	1 cut(s)	1479
Cfr13I	GGNCC	1 cut(s)	565
CviAII	CATG	4 cut(s)	188, 573, 1090, 1460
DpnI	GATC	6 cut(s)	5, 690, 708, 938, 1242, 1386
DpnII	GATC	6 cut(s)	3, 688, 706, 936, 1240, 1384
EaeI	YGGCCR	1 cut(s)	1061
Eam1104I	CTCTTC	5 cut(s)	88, 897, 923, 1169, 1479
EarI	CTCTTC	5 cut(s)	88, 897, 923, 1169, 1479
EciI	GGCGGA	1 cut(s)	1157
Eco130I	CCWWGG	2 cut(s)	187, 710
Eco24I	GRGCYC	1 cut(s)	558
Eco47I	GGWCC	1 cut(s)	565
Eco47III	AGCGCT	1 cut(s)	1478
Eco72I	CACGTG	1 cut(s)	1470
Eco88I	CYCGRG	1 cut(s)	626
EcoNI	CCTNNNNNAGG	1 cut(s)	926
EcoT14I	CCWWGG	2 cut(s)	187, 710
EcoT38I	GRGCYC	1 cut(s)	558
ErhI	CCWWGG	2 cut(s)	187, 710
FaeI	CATG	4 cut(s)	191, 576, 1093, 1463
FalI	AAGNNNNNCTT	4 cut(s)	284, 316, 305, 337
FatI	CATG	4 cut(s)	187, 572, 1089, 1459
FbaI	TGATCA	2 cut(s)	3, 1240
Fnu4HI	GCNGC	4 cut(s)	386, 506, 1494, 1531
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	4 cut(s)	386, 506, 1494, 1531
FspBI	CTAG	2 cut(s)	398, 711
GlaI	GCGC	1 cut(s)	1478
GluI	GCNGC	4 cut(s)	386, 506, 1494, 1531
GsuI	CTGGAG	1 cut(s)	1127
HaeII	RGCGCY	1 cut(s)	1480
HaeIII	GGCC	2 cut(s)	124, 1063
HhaI	GCGC	1 cut(s)	1479
Hin1II	CATG	4 cut(s)	191, 576, 1093, 1463
Hin6I	GCGC	1 cut(s)	1477
HinP1I	GCGC	1 cut(s)	1477
HindIII	AAGCTT	2 cut(s)	23, 1022
HinfI	GANTC	3 cut(s)	55, 161, 698
Hpy166II	GTNNAC	1 cut(s)	1196
Hpy188I	TCNGA	9 cut(s)	289, 366, 609, 703, 812, 936, 1262, 1344, 1378
Hpy188III	TCNNGA	5 cut(s)	59, 96, 158, 1388, 1421
Hpy8I	GTNNAC	1 cut(s)	1196
HpyAV	CCTTC	2 cut(s)	781, 953
HpyCH4III	ACNGT	5 cut(s)	336, 448, 478, 1002, 1271
HpyCH4IV	ACGT	2 cut(s)	392, 1469
HpyF10VI	GCNNNNNNNGC	5 cut(s)	263, 394, 644, 1217, 1502
HpySE526I	ACGT	2 cut(s)	392, 1469
Hsp92II	CATG	4 cut(s)	191, 576, 1093, 1463
HspAI	GCGC	1 cut(s)	1477
KpnI	GGTACC	1 cut(s)	1160
Ksp22I	TGATCA	2 cut(s)	3, 1240
Kzo9I	GATC	6 cut(s)	3, 688, 706, 936, 1240, 1384
LguI	GCTCTTC	1 cut(s)	897
LmnI	GCTCC	3 cut(s)	553, 1344, 1517
Lsp1109I	GCAGC	2 cut(s)	517, 1480
LweI	GCATC	5 cut(s)	625, 629, 751, 756, 778
MaeI	CTAG	2 cut(s)	398, 711
MaeII	ACGT	2 cut(s)	392, 1469
MaeIII	GTNAC	4 cut(s)	194, 415, 472, 576
MalI	GATC	6 cut(s)	5, 690, 708, 938, 1242, 1386
MboI	GATC	6 cut(s)	3, 688, 706, 936, 1240, 1384
MboII	GAAGA	9 cut(s)	75, 884, 910, 917, 1156, 1321, 1436, 1496, 1545
MfeI	CAATTG	1 cut(s)	1542
MflI	RGATCY	2 cut(s)	688, 706
MhlI	GDGCHC	1 cut(s)	558
MlsI	TGGCCA	1 cut(s)	1063
MluNI	TGGCCA	1 cut(s)	1063
Mox20I	TGGCCA	1 cut(s)	1063
MroXI	GAANNNNTTC	2 cut(s)	485, 603
MscI	TGGCCA	1 cut(s)	1063
MseI	TTAA	8 cut(s)	89, 129, 900, 1052, 1256, 1355, 1449, 1561
Msp20I	TGGCCA	1 cut(s)	1063
MspA1I	CMGCKG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	1542
MwoI	GCNNNNNNNGC	5 cut(s)	263, 394, 644, 1217, 1502
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	6 cut(s)	3, 688, 706, 936, 1240, 1384
NlaIII	CATG	4 cut(s)	191, 576, 1093, 1463
NlaIV	GGNNCC	5 cut(s)	555, 567, 708, 1158, 1331
NmuCI	GTSAC	1 cut(s)	576
PciSI	GCTCTTC	1 cut(s)	897
PdmI	GAANNNNTTC	2 cut(s)	485, 603
PfeI	GAWTC	3 cut(s)	55, 161, 698
PkrI	GCNGC	4 cut(s)	387, 507, 1495, 1532
PmaCI	CACGTG	1 cut(s)	1470
PmlI	CACGTG	1 cut(s)	1470
Ppu21I	YACGTR	1 cut(s)	1470
PsiI	TTATAA	2 cut(s)	464, 1040
PspCI	CACGTG	1 cut(s)	1470
PspN4I	GGNNCC	5 cut(s)	555, 567, 708, 1158, 1331
PspPI	GGNCC	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	934
PsuI	RGATCY	2 cut(s)	688, 706
PvuII	CAGCTG	1 cut(s)	50
SapI	GCTCTTC	1 cut(s)	897
SaqAI	TTAA	8 cut(s)	89, 129, 900, 1052, 1256, 1355, 1449, 1561
SatI	GCNGC	4 cut(s)	386, 506, 1494, 1531
Sau3AI	GATC	6 cut(s)	3, 688, 706, 936, 1240, 1384
Sau96I	GGNCC	1 cut(s)	565
ScaI	AGTACT	1 cut(s)	1058
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	5 cut(s)	625, 629, 751, 756, 778
SinI	GGWCC	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	1186
SmoI	CTYRAG	1 cut(s)	1186
SsiI	CCGC	4 cut(s)	385, 503, 1168, 1531
SspMI	CTAG	2 cut(s)	398, 711
StyI	CCWWGG	2 cut(s)	187, 710
TaaI	ACNGT	5 cut(s)	336, 448, 478, 1002, 1271
TaiI	ACGT	2 cut(s)	395, 1472
TatI	WGTACW	3 cut(s)	673, 1056, 1224
TauI	GCSGC	2 cut(s)	388, 1533
TfiI	GAWTC	3 cut(s)	55, 161, 698
Tru1I	TTAA	8 cut(s)	89, 129, 900, 1052, 1256, 1355, 1449, 1561
Tru9I	TTAA	8 cut(s)	89, 129, 900, 1052, 1256, 1355, 1449, 1561
TscAI	CASTG	4 cut(s)	109, 352, 1331, 1519
TseFI	GTSAC	1 cut(s)	576
TseI	GCWGC	2 cut(s)	505, 1493
Tsp45I	GTSAC	1 cut(s)	576
TspDTI	ATGAA	7 cut(s)	63, 75, 323, 612, 769, 1443, 1476
TspGWI	ACGGA	2 cut(s)	46, 1352
TspRI	CASTG	4 cut(s)	109, 352, 1331, 1519
VpaK11BI	GGWCC	1 cut(s)	565
XagI	CCTNNNNNAGG	1 cut(s)	926
XapI	RAATTY	8 cut(s)	172, 214, 434, 481, 599, 1113, 1368, 1415
XmaJI	CCTAGG	1 cut(s)	710
XmnI	GAANNNNTTC	2 cut(s)	485, 603
XspI	CTAG	2 cut(s)	398, 711
ZrmI	AGTACT	1 cut(s)	1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.