Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001125

Physical Location & Seq

Genomic Coordinates Reverse (-)

26664731 .. 26668654

Gene Structure 3924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24560.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTTAAACAAGATATTGAGCAAGGTTTCCCGGAAGTCTTCTAAGCGTTCTGAAAGTCGGGATGGAGGCCATACATTGTACTCGAATGGTCCCAGCTACTCGAAAAGTGGTGAGCTGGGGACTAGTAAGGCTGGTAATGTGATTTCGTCTGTGCCAGCTGGTGGGTTTGTTTCGGATGTTGGGAACAGTTATGGCAACAAGAATGCAAAGGGTGTGAATTTGAAGTTGAATGGCTTTGTGGCTTCATCTTCTTATGAAGCATTGCCTGGATTCAGAGATGTTCCCAATTCTGAGAAGCAGAACTTATTAGTCAGAAAGCTTAACTTGTGCTGTGTTATATTTGACTTCACGGACCCAACTAAGCATCTGAAAGAAAAAGAGATCAAGCGCCAGACACTGTTGGAAGTAGTGGATTATGTGACTTCAGCAAATGGTAAATTCTCAGAAATTGTGATGCAAGAGGGTATTAAAATGGTGTCTGCAAATTTGTTTAGGTCATTCTCTCCACAGCCACGGGAGAATAAGGTTGTAGATGGCTTTGACTTGGAAGAGGATGAGCCTTCAATGGATCCTGCTTGGCCTCACTTACAAATCGTTTATGAGTTTTTGTTAAGATTTGTTGCATCACCTGAGACAGATGCAAAATTAGCTAAAAAATATGTTGATCACTCATTCATTCTTAAGTTGCTTGATCTCTTTGACTCTGAAGATCCTAGAGAGAGGGAGTATTTGAAAACAATTCTGCACAGAACTTACGGAAAATTTATGGTGCATCGCCCATTCATCAGGAAAGCTATCAACAATATCTTCTATAGTTTTATCTTCGAGGCTGAGAAGCATAATGGGGTATCTGAACTTCTAGAAATTTTGGGCAGTATTATAAATGGGTTTGCGCTGCCACTGAAAGAAGAACATAAGTTGTTCCTTGTTCGGGCTCTAATTCCCTTGCATAAGCCCAAATATCTAGCAATGTACCATCAACAGCTATCTTATTGCATTACGCAATTTGTGGAAAAAGATTGCAAGCTTTCTGATACTGTCATAAGGGGTTTGTTGAAGTACTGGCCGGTCACTAACAGTTCAAAGGAAGTATTGTTTCTTAGTGAGCTGGAGGAGGTTCTAGAAGCAACTCAGCCATCTGAATTCCAGCGCTGCATGGTTCCCTTATTCCGCCAGATTGCTCATTGTTTGAACAGTTCTCACTTTCAGGCTTTCAGAGCAGCAGTTTATATAAAGCTTTCTGTATGGAAGTGGTGGCTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005829 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0010565 GO:0010646 GO:0010648 GO:0019216 GO:0019217 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0031998 GO:0032000 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050994 GO:0050996 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0080090 GO:1900457 GO:1900458

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

422

Amino Acids

48.09

Weight (kDa)

8.86

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B56	PF01603	88 - 411	9.9e-151	Protein phosphatase 2A regulatory B subunit (B56 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13460 AT1G13460 AT3G26020 AT3G26020 AT3G26020 AT3G26020
fragaria_vesca	FvH4_4g24551 FvH4_4g24551 FvH4_4g24551 FvH4_4g24560 FvH4_4g24560 FvH4_6g52600 FvH4_6g52600 FvH4_6g52600 FvH4_6g52600
malus_domestica	MD09G1017500.v1.1 MD13G1110300.v1.1 MD13G1110400.v1.1 MD16G1110300.v1.1 MD16G1110400.v1.1 MD17G1018300.v1.1
prunus_persica	Prupe.1G234200_v2.0.a1 Prupe.1G234200_v2.0.a1 Prupe.1G234200_v2.0.a1 Prupe.1G234200_v2.0.a1 Prupe.1G234400_v2.0.a1 Prupe.1G234400_v2.0.a1 Prupe.1G234400_v2.0.a1 Prupe.3G299400_v2.0.a1 Prupe.3G299400_v2.0.a1
pyrus_communis	pycom111g01440 pycom13g09600 pycom13g09610 pycom16g09370 pycom16g09380
rosa_chinensis	RchiOBHm_Chr2g0174161 RchiOBHm_Chr4g0431471 RchiOBHm_Chr4g0431481
rosa_laevigata	RLG00000006911 RLG00000022252
rosa_multiflora	Rmu_sc0007885.1_g000009 Rmu_sc0007885.1_g000011 Rmu_ssc0000198.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078400 Rroxscaffold_5G00372930
rosa_rugosa	Rorug02G0575500
rosa_samantha	Rh2AG654900 Rh2BG666100 Rh2CG630300 Rh2DG680700 Rh4AG306600 Rh4BG314600 Rh4BG314700 Rh4CG330000 Rh4DG309800
rosa_wichuraiana	Rw2G053750 Rw4G026610 Rw4G026620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	881
AccB7I	CCANNNNNTGG	1 cut(s)	161
AciI	CCGC	1 cut(s)	1171
AclWI	GGATC	3 cut(s)	563, 576, 704
AcoI	YGGCCR	1 cut(s)	1064
AcsI	RAATTY	6 cut(s)	217, 437, 484, 761, 864, 1142
AcuI	CTGAAG	2 cut(s)	408, 726
AfaI	GTAC	3 cut(s)	80, 974, 1061
AfeI	AGCGCT	1 cut(s)	1151
AfiI	CCNNNNNNNGG	2 cut(s)	161, 931
AflII	CTTAAG	1 cut(s)	680
AgsI	TTSAA	7 cut(s)	223, 229, 564, 733, 1057, 1083, 1192
AhlI	ACTAGT	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	3 cut(s)	563, 576, 704
AlwNI	CAGNNNCTG	1 cut(s)	397
Aor51HI	AGCGCT	1 cut(s)	1151
AoxI	GGCC	3 cut(s)	67, 578, 1064
ApeKI	GCWGC	3 cut(s)	895, 1152, 1220
ApoI	RAATTY	6 cut(s)	217, 437, 484, 761, 864, 1142
AspLEI	GCGC	3 cut(s)	390, 895, 1152
AspS9I	GGNCC	2 cut(s)	89, 352
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	122, 618
AvaII	GGWCC	2 cut(s)	89, 352
BamHI	GGATCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	937
BarI	GAAGNNNNNNTAC	2 cut(s)	840, 872
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	882, 1139, 1232
BccI	CCATC	4 cut(s)	56, 527, 984, 1144
BciT130I	CCWGG	1 cut(s)	267
BclI	TGATCA	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	626
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	5 cut(s)	123, 714, 860, 965, 1121
BfmI	CTRYAG	1 cut(s)	811
BfoI	RGCGCY	2 cut(s)	391, 1153
BfrI	CTTAAG	1 cut(s)	680
BisI	GCNGC	3 cut(s)	896, 1153, 1221
BlsI	GCNGC	3 cut(s)	897, 1154, 1222
BmcAI	AGTACT	1 cut(s)	1061
Bme1390I	CCNGG	2 cut(s)	31, 267
Bme18I	GGWCC	2 cut(s)	89, 352
BmgT120I	GGNCC	2 cut(s)	89, 352
BmiI	GGNNCC	4 cut(s)	91, 354, 570, 1161
BmrFI	CCNGG	2 cut(s)	31, 267
BmsI	GCATC	5 cut(s)	373, 444, 628, 632, 781
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	1130
BpuMI	CCSGG	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 931
Bse118I	RCCGGY	1 cut(s)	1066
Bse1I	ACTGG	1 cut(s)	1067
Bse3DI	GCAATG	2 cut(s)	260, 975
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	3 cut(s)	67, 181, 559
BseLI	CCNNNNNNNGG	2 cut(s)	161, 931
BseMI	GCAATG	2 cut(s)	260, 975
BseMII	CTCAG	5 cut(s)	282, 456, 621, 822, 1145
BseNI	ACTGG	1 cut(s)	1067
BseRI	GAGGAG	1 cut(s)	1127
BseXI	GCAGC	3 cut(s)	882, 1139, 1232
BseYI	CCCAGC	2 cut(s)	92, 115
BsgI	GTGCAG	1 cut(s)	728
BshFI	GGCC	3 cut(s)	69, 580, 1066
BsiSI	CCGG	2 cut(s)	31, 1067
BslFI	GGGAC	2 cut(s)	75, 133
BslI	CCNNNNNNNGG	2 cut(s)	161, 931
BsmAI	GTCTC	1 cut(s)	626
BsmFI	GGGAC	2 cut(s)	75, 133
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	3 cut(s)	69, 580, 1066
Bsp1286I	GDGCHC	1 cut(s)	937
Bsp143I	GATC	5 cut(s)	381, 568, 664, 691, 709
BspACI	CCGC	1 cut(s)	1171
BspANI	GGCC	3 cut(s)	69, 580, 1066
BspCNI	CTCAG	5 cut(s)	283, 455, 622, 823, 1144
BspLI	GGNNCC	4 cut(s)	91, 354, 570, 1161
BspPI	GGATC	3 cut(s)	563, 576, 704
BspTI	CTTAAG	1 cut(s)	680
BsrDI	GCAATG	2 cut(s)	260, 975
BsrFI	RCCGGY	1 cut(s)	1066
BsrI	ACTGG	1 cut(s)	1067
BssAI	RCCGGY	1 cut(s)	1066
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	5 cut(s)	381, 568, 664, 691, 709
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	5 cut(s)	188, 399, 1039, 1079, 1196
Bst6I	CTCTTC	1 cut(s)	543
BstAFI	CTTAAG	1 cut(s)	680
BstC8I	GCNNGC	2 cut(s)	156, 1025
BstDEI	CTNAG	8 cut(s)	42, 291, 360, 442, 630, 831, 1100, 1131
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	3 cut(s)	67, 181, 559
BstH2I	RGCGCY	2 cut(s)	391, 1153
BstHHI	GCGC	3 cut(s)	390, 895, 1152
BstKTI	GATC	5 cut(s)	384, 571, 667, 694, 712
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	5 cut(s)	381, 568, 664, 691, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	647, 1217
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	2 cut(s)	29, 265
BstSFI	CTRYAG	1 cut(s)	811
BstV1I	GCAGC	3 cut(s)	882, 1139, 1232
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	2 cut(s)	568, 709
BstYI	RGATCY	2 cut(s)	568, 709
BsuRI	GGCC	3 cut(s)	69, 580, 1066
BtgI	CCRYGG	1 cut(s)	512
BtgZI	GCGATG	1 cut(s)	758
BtsCI	GGATG	3 cut(s)	67, 181, 559
BtsIMutI	CAGTG	2 cut(s)	395, 899
Cac8I	GCNNGC	2 cut(s)	156, 1025
CaiI	CAGNNNCTG	1 cut(s)	397
CfoI	GCGC	3 cut(s)	390, 895, 1152
Cfr10I	RCCGGY	1 cut(s)	1066
Cfr13I	GGNCC	2 cut(s)	89, 352
Csp6I	GTAC	3 cut(s)	79, 973, 1060
CviAII	CATG	1 cut(s)	1156
CviQI	GTAC	3 cut(s)	79, 973, 1060
DdeI	CTNAG	8 cut(s)	42, 291, 360, 442, 630, 831, 1100, 1131
DpnI	GATC	5 cut(s)	383, 570, 666, 693, 711
DpnII	GATC	5 cut(s)	381, 568, 664, 691, 709
EaeI	YGGCCR	1 cut(s)	1064
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	1 cut(s)	1160
Eco24I	GRGCYC	1 cut(s)	937
Eco47I	GGWCC	2 cut(s)	89, 352
Eco47III	AGCGCT	1 cut(s)	1151
Eco57I	CTGAAG	2 cut(s)	408, 726
EcoRI	GAATTC	1 cut(s)	1142
EcoRII	CCWGG	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	937
FaeI	CATG	1 cut(s)	1159
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 308, 340
FaqI	GGGAC	2 cut(s)	75, 133
FatI	CATG	1 cut(s)	1155
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	3 cut(s)	896, 1153, 1221
FokI	GGATG	3 cut(s)	74, 188, 566
FriOI	GRGCYC	1 cut(s)	937
Fsp4HI	GCNGC	3 cut(s)	896, 1153, 1221
FspBI	CTAG	5 cut(s)	123, 714, 860, 965, 1121
GlaI	GCGC	3 cut(s)	389, 894, 1151
GluI	GCNGC	3 cut(s)	896, 1153, 1221
GsaI	CCCAGC	2 cut(s)	96, 119
GsuI	CTGGAG	1 cut(s)	1130
HaeII	RGCGCY	2 cut(s)	391, 1153
HaeIII	GGCC	3 cut(s)	69, 580, 1066
HapII	CCGG	2 cut(s)	31, 1067
HhaI	GCGC	3 cut(s)	390, 895, 1152
Hin1II	CATG	1 cut(s)	1159
Hin6I	GCGC	3 cut(s)	388, 893, 1150
HinP1I	GCGC	3 cut(s)	388, 893, 1150
HindIII	AAGCTT	3 cut(s)	317, 1025, 1235
HinfI	GANTC	2 cut(s)	270, 701
HpaII	CCGG	2 cut(s)	31, 1067
HphI	GGTGA	2 cut(s)	122, 618
Hpy188III	TCNNGA	4 cut(s)	59, 787, 860, 1121
HpyAV	CCTTC	1 cut(s)	570
HpyCH4III	ACNGT	5 cut(s)	188, 399, 1039, 1079, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	647, 1217
HpyF3I	CTNAG	8 cut(s)	42, 291, 360, 442, 630, 831, 1100, 1131
Hsp92II	CATG	1 cut(s)	1159
HspAI	GCGC	3 cut(s)	388, 893, 1150
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	5 cut(s)	381, 568, 664, 691, 709
Lsp1109I	GCAGC	3 cut(s)	882, 1139, 1232
LweI	GCATC	5 cut(s)	373, 444, 628, 632, 781
MaeI	CTAG	5 cut(s)	123, 714, 860, 965, 1121
MaeIII	GTNAC	2 cut(s)	418, 1069
MalI	GATC	5 cut(s)	383, 570, 666, 693, 711
MboI	GATC	5 cut(s)	381, 568, 664, 691, 709
MboII	GAAGA	7 cut(s)	30, 240, 560, 719, 799, 814, 920
MflI	RGATCY	2 cut(s)	568, 709
MhlI	GDGCHC	1 cut(s)	937
MlyI	GAGTC	1 cut(s)	695
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	8 cut(s)	59, 454, 544, 591, 714, 820, 1105, 1108
MseI	TTAA	5 cut(s)	5, 321, 468, 611, 681
MspA1I	CMGCKG	1 cut(s)	158
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	2 cut(s)	31, 1067
MspR9I	CCNGG	2 cut(s)	31, 267
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	647, 1217
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	5 cut(s)	381, 568, 664, 691, 709
NlaIII	CATG	1 cut(s)	1159
NlaIV	GGNNCC	4 cut(s)	91, 354, 570, 1161
NmuCI	GTSAC	2 cut(s)	418, 1069
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	270
PflMI	CCANNNNNTGG	1 cut(s)	161
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	897, 1154, 1222
PleI	GAGTC	1 cut(s)	695
PpsI	GAGTC	1 cut(s)	695
PsiI	TTATAA	1 cut(s)	881
Psp6I	CCWGG	1 cut(s)	265
PspFI	CCCAGC	2 cut(s)	92, 115
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	4 cut(s)	91, 354, 570, 1161
PspPI	GGNCC	2 cut(s)	89, 352
PstNI	CAGNNNCTG	1 cut(s)	397
PsuI	RGATCY	2 cut(s)	568, 709
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	3 cut(s)	80, 974, 1061
RsaNI	GTAC	3 cut(s)	79, 973, 1060
SaqAI	TTAA	5 cut(s)	5, 321, 468, 611, 681
SatI	GCNGC	3 cut(s)	896, 1153, 1221
Sau3AI	GATC	5 cut(s)	381, 568, 664, 691, 709
Sau96I	GGNCC	2 cut(s)	89, 352
ScaI	AGTACT	1 cut(s)	1061
SchI	GAGTC	1 cut(s)	695
ScrFI	CCNGG	2 cut(s)	31, 267
SduI	GDGCHC	1 cut(s)	937
SfaNI	GCATC	5 cut(s)	373, 444, 628, 632, 781
SfcI	CTRYAG	1 cut(s)	811
SinI	GGWCC	2 cut(s)	89, 352
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
SpeI	ACTAGT	1 cut(s)	122
SsiI	CCGC	1 cut(s)	1171
SspMI	CTAG	5 cut(s)	123, 714, 860, 965, 1121
StyD4I	CCNGG	2 cut(s)	29, 265
TaaI	ACNGT	5 cut(s)	188, 399, 1039, 1079, 1196
TaqI	TCGA	3 cut(s)	83, 101, 825
TatI	WGTACW	2 cut(s)	78, 1059
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	5 cut(s)	5, 321, 468, 611, 681
Tru9I	TTAA	5 cut(s)	5, 321, 468, 611, 681
TscAI	CASTG	2 cut(s)	402, 906
TseFI	GTSAC	2 cut(s)	418, 1069
TseI	GCWGC	3 cut(s)	895, 1152, 1220
Tsp45I	GTSAC	2 cut(s)	418, 1069
TspDTI	ATGAA	4 cut(s)	234, 270, 664, 772
TspGWI	ACGGA	2 cut(s)	365, 771
TspRI	CASTG	2 cut(s)	402, 906
Van91I	CCANNNNNTGG	1 cut(s)	161
Vha464I	CTTAAG	1 cut(s)	680
VpaK11BI	GGWCC	2 cut(s)	89, 352
XapI	RAATTY	6 cut(s)	217, 437, 484, 761, 864, 1142
XbaI	TCTAGA	2 cut(s)	859, 1120
XspI	CTAG	5 cut(s)	123, 714, 860, 965, 1121
ZrmI	AGTACT	1 cut(s)	1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.