The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 881 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 127 |
| Acc16I | TGCGCA | 1 cut(s) | 1553 |
| AciI | CCGC | 3 cut(s) | 506, 1171, 1366 |
| AclI | AACGTT | 1 cut(s) | 1480 |
| AclWI | GGATC | 4 cut(s) | 563, 576, 704, 1382 |
| AcoI | YGGCCR | 1 cut(s) | 1064 |
| AcsI | RAATTY | 7 cut(s) | 217, 437, 484, 761, 864, 1142, 1371 |
| AcuI | CTGAAG | 1 cut(s) | 408 |
| AcyI | GRCGYC | 1 cut(s) | 242 |
| AdeI | CACNNNGTG | 1 cut(s) | 1463 |
| AfaI | GTAC | 3 cut(s) | 153, 974, 1061 |
| AfeI | AGCGCT | 1 cut(s) | 1151 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 931 |
| AflII | CTTAAG | 1 cut(s) | 680 |
| AgsI | TTSAA | 8 cut(s) | 223, 229, 733, 1057, 1083, 1192, 1402, 1423 |
| AjiI | CACGTC | 1 cut(s) | 1463 |
| AjnI | CCWGG | 1 cut(s) | 265 |
| Alw21I | GWGCWC | 1 cut(s) | 1546 |
| Alw26I | GTCTC | 1 cut(s) | 626 |
| AlwI | GGATC | 4 cut(s) | 563, 576, 704, 1382 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 449 |
| Ama87I | CYCGRG | 1 cut(s) | 1391 |
| Aor51HI | AGCGCT | 1 cut(s) | 1151 |
| AoxI | GGCC | 4 cut(s) | 67, 578, 1064, 1467 |
| ApeKI | GCWGC | 3 cut(s) | 508, 1152, 1496 |
| ApoI | RAATTY | 7 cut(s) | 217, 437, 484, 761, 864, 1142, 1371 |
| AspLEI | GCGC | 3 cut(s) | 390, 1152, 1554 |
| AspS9I | GGNCC | 1 cut(s) | 310 |
| AsuC2I | CCSGG | 1 cut(s) | 31 |
| AsuHPI | GGTGA | 3 cut(s) | 122, 618, 1063 |
| AsuII | TTCGAA | 1 cut(s) | 83 |
| AvaI | CYCGRG | 1 cut(s) | 1391 |
| AvaII | GGWCC | 1 cut(s) | 310 |
| BamHI | GGATCC | 1 cut(s) | 568 |
| BanII | GRGCYC | 2 cut(s) | 937, 1225 |
| BbsI | GAAGAC | 2 cut(s) | 30, 237 |
| Bbv12I | GWGCWC | 1 cut(s) | 1546 |
| BbvI | GCAGC | 3 cut(s) | 520, 1139, 1483 |
| BccI | CCATC | 5 cut(s) | 56, 527, 568, 984, 1144 |
| BciT130I | CCWGG | 1 cut(s) | 267 |
| BclI | TGATCA | 2 cut(s) | 664, 1260 |
| BcnI | CCSGG | 1 cut(s) | 31 |
| BcoDI | GTCTC | 1 cut(s) | 626 |
| BfaI | CTAG | 6 cut(s) | 116, 123, 714, 860, 965, 1320 |
| BfoI | RGCGCY | 2 cut(s) | 391, 1153 |
| BfrI | CTTAAG | 1 cut(s) | 680 |
| BisI | GCNGC | 3 cut(s) | 509, 1153, 1497 |
| BlsI | GCNGC | 3 cut(s) | 510, 1154, 1498 |
| BmcAI | AGTACT | 1 cut(s) | 1061 |
| Bme1390I | CCNGG | 2 cut(s) | 31, 267 |
| Bme18I | GGWCC | 1 cut(s) | 310 |
| BmeT110I | CYCGRG | 1 cut(s) | 1391 |
| BmgBI | CACGTC | 1 cut(s) | 1463 |
| BmgT120I | GGNCC | 1 cut(s) | 310 |
| BmiI | GGNNCC | 3 cut(s) | 558, 570, 1161 |
| BmrFI | CCNGG | 2 cut(s) | 31, 267 |
| BmsI | GCATC | 3 cut(s) | 628, 632, 781 |
| BpiI | GAAGAC | 2 cut(s) | 30, 237 |
| BpmI | CTGGAG | 1 cut(s) | 1130 |
| Bpu14I | TTCGAA | 1 cut(s) | 83 |
| BpuMI | CCSGG | 1 cut(s) | 31 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1386 |
| BsaHI | GRCGYC | 1 cut(s) | 242 |
| BsaJI | CCNNGG | 1 cut(s) | 512 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 931 |
| Bse118I | RCCGGY | 2 cut(s) | 158, 1066 |
| Bse1I | ACTGG | 1 cut(s) | 1067 |
| Bse3DI | GCAATG | 2 cut(s) | 260, 975 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1386 |
| BseBI | CCWGG | 1 cut(s) | 267 |
| BseDI | CCNNGG | 1 cut(s) | 512 |
| BseGI | GGATG | 2 cut(s) | 643, 1450 |
| BseJI | GATNNNNATC | 1 cut(s) | 1386 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 931 |
| BseMI | GCAATG | 2 cut(s) | 260, 975 |
| BseMII | CTCAG | 4 cut(s) | 282, 621, 822, 1145 |
| BseNI | ACTGG | 1 cut(s) | 1067 |
| BseRI | GAGGAG | 4 cut(s) | 566, 569, 1127, 1430 |
| BseXI | GCAGC | 3 cut(s) | 520, 1139, 1483 |
| BsgI | GTGCAG | 1 cut(s) | 728 |
| BshFI | GGCC | 4 cut(s) | 69, 580, 1066, 1469 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1546 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1391 |
| BsiSI | CCGG | 3 cut(s) | 31, 159, 1067 |
| BslFI | GGGAC | 1 cut(s) | 133 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 931 |
| BsmAI | GTCTC | 1 cut(s) | 626 |
| BsmBI | CGTCTC | 1 cut(s) | 626 |
| BsmFI | GGGAC | 1 cut(s) | 133 |
| BsmI | GAATGC | 4 cut(s) | 46, 91, 208, 1412 |
| BsnI | GGCC | 4 cut(s) | 69, 580, 1066, 1469 |
| BsoBI | CYCGRG | 1 cut(s) | 1391 |
| Bsp119I | TTCGAA | 1 cut(s) | 83 |
| Bsp1286I | GDGCHC | 3 cut(s) | 937, 1225, 1546 |
| BspACI | CCGC | 3 cut(s) | 506, 1171, 1366 |
| BspANI | GGCC | 4 cut(s) | 69, 580, 1066, 1469 |
| BspCNI | CTCAG | 4 cut(s) | 283, 622, 823, 1144 |
| BspLI | GGNNCC | 3 cut(s) | 558, 570, 1161 |
| BspPI | GGATC | 4 cut(s) | 563, 576, 704, 1382 |
| BspT104I | TTCGAA | 1 cut(s) | 83 |
| BspTI | CTTAAG | 1 cut(s) | 680 |
| BsrDI | GCAATG | 2 cut(s) | 260, 975 |
| BsrFI | RCCGGY | 2 cut(s) | 158, 1066 |
| BsrI | ACTGG | 1 cut(s) | 1067 |
| BssAI | RCCGGY | 2 cut(s) | 158, 1066 |
| BssECI | CCNNGG | 1 cut(s) | 512 |
| BssNI | GRCGYC | 1 cut(s) | 242 |
| Bst2UI | CCWGG | 1 cut(s) | 267 |
| Bst4CI | ACNGT | 5 cut(s) | 399, 451, 1039, 1079, 1196 |
| Bst6I | CTCTTC | 1 cut(s) | 543 |
| BstACI | GRCGYC | 1 cut(s) | 242 |
| BstAFI | CTTAAG | 1 cut(s) | 680 |
| BstBI | TTCGAA | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 3 cut(s) | 1025, 1029, 1106 |
| BstDEI | CTNAG | 8 cut(s) | 42, 291, 360, 630, 831, 1100, 1131, 1411 |
| BstDSI | CCRYGG | 1 cut(s) | 512 |
| BstEII | GGTNACC | 1 cut(s) | 1069 |
| BstF5I | GGATG | 2 cut(s) | 643, 1450 |
| BstH2I | RGCGCY | 2 cut(s) | 391, 1153 |
| BstHHI | GCGC | 3 cut(s) | 390, 1152, 1554 |
| BstMAI | GTCTC | 1 cut(s) | 626 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 586, 647, 1220, 1505 |
| BstNI | CCWGG | 1 cut(s) | 267 |
| BstPI | GGTNACC | 1 cut(s) | 1069 |
| BstSCI | CCNGG | 2 cut(s) | 29, 265 |
| BstV1I | GCAGC | 3 cut(s) | 520, 1139, 1483 |
| BstV2I | GAAGAC | 2 cut(s) | 30, 237 |
| BstX2I | RGATCY | 2 cut(s) | 568, 709 |
| BstYI | RGATCY | 2 cut(s) | 568, 709 |
| BsuRI | GGCC | 4 cut(s) | 69, 580, 1066, 1469 |
| BtgI | CCRYGG | 1 cut(s) | 512 |
| BtgZI | GCGATG | 1 cut(s) | 758 |
| BtrI | CACGTC | 1 cut(s) | 1463 |
| BtsCI | GGATG | 2 cut(s) | 643, 1450 |
| BtsI | GCAGTG | 1 cut(s) | 1554 |
| BtsIMutI | CAGTG | 3 cut(s) | 395, 899, 1554 |
| Cac8I | GCNNGC | 3 cut(s) | 1025, 1029, 1106 |
| CaiI | CAGNNNCTG | 1 cut(s) | 449 |
| CfoI | GCGC | 3 cut(s) | 390, 1152, 1554 |
| Cfr10I | RCCGGY | 2 cut(s) | 158, 1066 |
| Cfr13I | GGNCC | 1 cut(s) | 310 |
| CseI | GACGC | 1 cut(s) | 231 |
| Csp6I | GTAC | 3 cut(s) | 152, 973, 1060 |
| CviAII | CATG | 2 cut(s) | 1156, 1473 |
| CviQI | GTAC | 3 cut(s) | 152, 973, 1060 |
| DdeI | CTNAG | 8 cut(s) | 42, 291, 360, 630, 831, 1100, 1131, 1411 |
| DraIII | CACNNNGTG | 1 cut(s) | 1463 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 127 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 127 |
| EaeI | YGGCCR | 1 cut(s) | 1064 |
| Eam1104I | CTCTTC | 1 cut(s) | 543 |
| EarI | CTCTTC | 1 cut(s) | 543 |
| EciI | GGCGGA | 1 cut(s) | 1160 |
| Eco24I | GRGCYC | 2 cut(s) | 937, 1225 |
| Eco47I | GGWCC | 1 cut(s) | 310 |
| Eco47III | AGCGCT | 1 cut(s) | 1151 |
| Eco57I | CTGAAG | 1 cut(s) | 408 |
| Eco88I | CYCGRG | 1 cut(s) | 1391 |
| Eco91I | GGTNACC | 1 cut(s) | 1069 |
| EcoO65I | GGTNACC | 1 cut(s) | 1069 |
| EcoRI | GAATTC | 1 cut(s) | 1142 |
| EcoRII | CCWGG | 1 cut(s) | 265 |
| EcoT38I | GRGCYC | 2 cut(s) | 937, 1225 |
| Esp3I | CGTCTC | 1 cut(s) | 626 |
| FaeI | CATG | 2 cut(s) | 1159, 1476 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 287, 319 |
| FaqI | GGGAC | 1 cut(s) | 133 |
| FatI | CATG | 2 cut(s) | 1155, 1472 |
| FbaI | TGATCA | 2 cut(s) | 664, 1260 |
| Fnu4HI | GCNGC | 3 cut(s) | 509, 1153, 1497 |
| FokI | GGATG | 2 cut(s) | 650, 1457 |
| FriOI | GRGCYC | 2 cut(s) | 937, 1225 |
| Fsp4HI | GCNGC | 3 cut(s) | 509, 1153, 1497 |
| FspBI | CTAG | 6 cut(s) | 116, 123, 714, 860, 965, 1320 |
| FspI | TGCGCA | 1 cut(s) | 1553 |
| GlaI | GCGC | 3 cut(s) | 389, 1151, 1553 |
| GluI | GCNGC | 3 cut(s) | 509, 1153, 1497 |
| GsuI | CTGGAG | 1 cut(s) | 1130 |
| HaeII | RGCGCY | 2 cut(s) | 391, 1153 |
| HaeIII | GGCC | 4 cut(s) | 69, 580, 1066, 1469 |
| HapII | CCGG | 3 cut(s) | 31, 159, 1067 |
| HgaI | GACGC | 1 cut(s) | 231 |
| HhaI | GCGC | 3 cut(s) | 390, 1152, 1554 |
| Hin1I | GRCGYC | 1 cut(s) | 242 |
| Hin1II | CATG | 2 cut(s) | 1159, 1476 |
| Hin6I | GCGC | 3 cut(s) | 388, 1150, 1552 |
| HinP1I | GCGC | 3 cut(s) | 388, 1150, 1552 |
| HindIII | AAGCTT | 1 cut(s) | 1025 |
| HinfI | GANTC | 4 cut(s) | 701, 1270, 1333, 1433 |
| HpaII | CCGG | 3 cut(s) | 31, 159, 1067 |
| HphI | GGTGA | 3 cut(s) | 122, 618, 1063 |
| Hpy166II | GTNNAC | 1 cut(s) | 598 |
| Hpy188I | TCNGA | 7 cut(s) | 52, 175, 292, 445, 706, 853, 1141 |
| Hpy188III | TCNNGA | 4 cut(s) | 59, 787, 1385, 1391 |
| Hpy8I | GTNNAC | 1 cut(s) | 598 |
| Hpy99I | CGWCG | 1 cut(s) | 1464 |
| HpyAV | CCTTC | 3 cut(s) | 784, 1432, 1498 |
| HpyCH4III | ACNGT | 5 cut(s) | 399, 451, 1039, 1079, 1196 |
| HpyCH4IV | ACGT | 3 cut(s) | 1462, 1480, 1564 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 586, 647, 1220, 1505 |
| HpyF3I | CTNAG | 8 cut(s) | 42, 291, 360, 630, 831, 1100, 1131, 1411 |
| HpySE526I | ACGT | 3 cut(s) | 1462, 1480, 1564 |
| Hsp92I | GRCGYC | 1 cut(s) | 242 |
| Hsp92II | CATG | 2 cut(s) | 1159, 1476 |
| HspAI | GCGC | 3 cut(s) | 388, 1150, 1552 |
| Ksp22I | TGATCA | 2 cut(s) | 664, 1260 |
| LmnI | GCTCC | 2 cut(s) | 94, 556 |
| Lsp1109I | GCAGC | 3 cut(s) | 520, 1139, 1483 |
| LweI | GCATC | 3 cut(s) | 628, 632, 781 |
| MaeI | CTAG | 6 cut(s) | 116, 123, 714, 860, 965, 1320 |
| MaeII | ACGT | 3 cut(s) | 1462, 1480, 1564 |
| MaeIII | GTNAC | 2 cut(s) | 418, 1069 |
| MboII | GAAGA | 8 cut(s) | 30, 237, 240, 560, 719, 920, 1439, 1499 |
| MflI | RGATCY | 2 cut(s) | 568, 709 |
| MhlI | GDGCHC | 3 cut(s) | 937, 1225, 1546 |
| MlyI | GAGTC | 2 cut(s) | 695, 1442 |
| MmeI | TCCRAC | 1 cut(s) | 381 |
| MseI | TTAA | 6 cut(s) | 5, 17, 468, 611, 681, 1358 |
| MspCI | CTTAAG | 1 cut(s) | 680 |
| MspI | CCGG | 3 cut(s) | 31, 159, 1067 |
| MspR9I | CCNGG | 2 cut(s) | 31, 267 |
| Mva1269I | GAATGC | 4 cut(s) | 46, 91, 208, 1412 |
| MvaI | CCWGG | 1 cut(s) | 267 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 586, 647, 1220, 1505 |
| NciI | CCSGG | 1 cut(s) | 31 |
| NlaIII | CATG | 2 cut(s) | 1159, 1476 |
| NlaIV | GGNNCC | 3 cut(s) | 558, 570, 1161 |
| NmuCI | GTSAC | 2 cut(s) | 418, 1069 |
| NsbI | TGCGCA | 1 cut(s) | 1553 |
| NspV | TTCGAA | 1 cut(s) | 83 |
| PctI | GAATGC | 4 cut(s) | 46, 91, 208, 1412 |
| PfeI | GAWTC | 2 cut(s) | 1270, 1333 |
| PfoI | TCCNGGA | 1 cut(s) | 29 |
| PkrI | GCNGC | 3 cut(s) | 510, 1154, 1498 |
| PleI | GAGTC | 2 cut(s) | 695, 1441 |
| PpsI | GAGTC | 2 cut(s) | 695, 1441 |
| PsiI | TTATAA | 1 cut(s) | 881 |
| Psp1406I | AACGTT | 1 cut(s) | 1480 |
| Psp6I | CCWGG | 1 cut(s) | 265 |
| PspEI | GGTNACC | 1 cut(s) | 1069 |
| PspGI | CCWGG | 1 cut(s) | 265 |
| PspN4I | GGNNCC | 3 cut(s) | 558, 570, 1161 |
| PspPI | GGNCC | 1 cut(s) | 310 |
| PstNI | CAGNNNCTG | 1 cut(s) | 449 |
| PsuI | RGATCY | 2 cut(s) | 568, 709 |
| RsaI | GTAC | 3 cut(s) | 153, 974, 1061 |
| RsaNI | GTAC | 3 cut(s) | 152, 973, 1060 |
| SaqAI | TTAA | 6 cut(s) | 5, 17, 468, 611, 681, 1358 |
| SatI | GCNGC | 3 cut(s) | 509, 1153, 1497 |
| Sau96I | GGNCC | 1 cut(s) | 310 |
| ScaI | AGTACT | 1 cut(s) | 1061 |
| SchI | GAGTC | 2 cut(s) | 695, 1442 |
| ScrFI | CCNGG | 2 cut(s) | 31, 267 |
| SduI | GDGCHC | 3 cut(s) | 937, 1225, 1546 |
| SfaNI | GCATC | 3 cut(s) | 628, 632, 781 |
| SfuI | TTCGAA | 1 cut(s) | 83 |
| SinI | GGWCC | 1 cut(s) | 310 |
| SmlI | CTYRAG | 1 cut(s) | 680 |
| SmoI | CTYRAG | 1 cut(s) | 680 |
| SsiI | CCGC | 3 cut(s) | 506, 1171, 1366 |
| SspMI | CTAG | 6 cut(s) | 116, 123, 714, 860, 965, 1320 |
| StyD4I | CCNGG | 2 cut(s) | 29, 265 |
| TaaI | ACNGT | 5 cut(s) | 399, 451, 1039, 1079, 1196 |
| TaiI | ACGT | 3 cut(s) | 1465, 1483, 1567 |
| TaqI | TCGA | 3 cut(s) | 58, 83, 1436 |
| TatI | WGTACW | 1 cut(s) | 1059 |
| TfiI | GAWTC | 2 cut(s) | 1270, 1333 |
| Tru1I | TTAA | 6 cut(s) | 5, 17, 468, 611, 681, 1358 |
| Tru9I | TTAA | 6 cut(s) | 5, 17, 468, 611, 681, 1358 |
| TscAI | CASTG | 3 cut(s) | 402, 906, 1561 |
| TseFI | GTSAC | 2 cut(s) | 418, 1069 |
| TseI | GCWGC | 3 cut(s) | 508, 1152, 1496 |
| Tsp45I | GTSAC | 2 cut(s) | 418, 1069 |
| TspDTI | ATGAA | 4 cut(s) | 270, 664, 772, 1334 |
| TspGWI | ACGGA | 1 cut(s) | 650 |
| TspRI | CASTG | 3 cut(s) | 402, 906, 1561 |
| Vha464I | CTTAAG | 1 cut(s) | 680 |
| VpaK11BI | GGWCC | 1 cut(s) | 310 |
| XapI | RAATTY | 7 cut(s) | 217, 437, 484, 761, 864, 1142, 1371 |
| XspI | CTAG | 6 cut(s) | 116, 123, 714, 860, 965, 1320 |
| ZrmI | AGTACT | 1 cut(s) | 1061 |